RNA id: XM_043219392.1


Basic Information

Item Value
RNA id XM_043219392.1
length 1700
RNA type mRNA
GC content 0.54
exon number 8
gene id gopc
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 23197531 ~ 23210436 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ctcGGCAGCTAGCTGAAGTTTTCTTTTGATTAaacttaatttgttttgttttagtgaatCGTAATACTGTTTATACTCGGTAATCGAATCGCTCGTCTATCGACTTCTTCATTGACGGGCTCCATCGTGTGGCAGACCAAACCAATCGATCCCCGCTCGATCGGCTCGCTCTCGGATTTCCTGGTCAGATGAGAGCGCGGAAAAACACGCCGACAAAACATCGCTCTCGCTCTCTATCTCGTCGGAAGTCTGGCGTTAATATAACTTCATCGGCCGGCGATCGCACCGAGTAAAGGACTACAGTTCGGGTTATCCGTGCGTTCTTCTTGCGTCCGTGTTAAACATGTCTGCGTCCGCTGGCGGTGCTGTCTCCCCGGGCTCGGCCCTCTCTCCCGGTCCCGCCGCGGCTCCCGGCTCCGGTATGTCCATGTTCCGGTGGCTGGAGGTGCTGGAGAAGGAGTTTGACAAGGCGTTTGTGGACGTGGATCTGTTGCTGGGAGAGATCGACCCGGATCAGGCTGATATCACGTACGAGGGCCGTCAGAAGATGACCAGCCTCAGCTCGTGTTTTGCTCAGCTGTGTCATAAATCACAAACCATCTTTCAGCTCAACCACAAACTAGAGGCTCAGCTGGTGGACCTGCGGTCGGAGCTGACAGATGTCCAGGCAGAGAAGGTTGTGGTGGAGAAGGAGGTCCACGAACAACTTCTTCAACTTCACGCCATGCAGCTCAAACTCCAAGCCAAAGGTGGACAGGCGGTCGACTCTGACTCTATCAAGGACAGGATGGAGAAGGAGCTGGAGGCcagcaagaaagaaaaagtgaagGAGGCCAAGTTGGAGGCAGAGGTGAAGATGTTGAAGAAAGAGAACGAGGCCCTCCGCAGGCACATTGCGGTACTACAGGCCGAGGTGTACGGCGCCAGACTGGCAGCCAAGTATCTGGACAAGGAGCTGGCAGGGAGGGTGCAGCAGATCCAGTTGCTCGGGAGAGACATGAAAGGACCAGCTCATGACAAGCTGTGGAACCAGCTTGAAGCTGAGATTCACCTGCACCGCCATAAAACAGTGATCCGAGCCTGCAGGGGGCGCAACGATCCCAAAAAACCCTTGCCATCACCCGTGGGGCATGACACAGATTCTCTGAAAAAGACTCAGGGAGTAGGCCCTATACGCAAAGTGGTTTTGACCAAAGAAGATCACGAAGGACTTGGCATCTCTATTACCGGCGGGAAAGAGCACGGCGTTCCCATCCTCATCTCCGAAATCCACCCAACCCAGCCCGCAGAGCGCTGCGGAGGACTGCATGTGGGAGATGCCATCTTAGCCGTCAACAACATCAACCTGAGAGATGCAAAGCACAAAGAGGCCGTCACCATCCTCTCGCAGCAGCGGGGGGAAATTGAGTTCGAGGTGGTTTACGTGGCTCCAGAGGTGGACTCTGACGATGAGAACGTGGAGTATGAAGATGACAGCGGACACCGCTACCGTCTGTACCTGGACGAGCTGGAGGAGGGGTCAGGAGCCGCTCACAATAATGGCACTGCTGACCCTGCTTCCCTACAAGCTGTAGGGAAGCATTTAGTGAACAACAGAACAGAGAACGGAGACGCTGCTTTGTCCAGTGAAAGTCCTTCAGACGACAAGACCTCCAAGACGGCAGAGTCTGCAGAGAGCTCCTCCTAGATCTCCAGACTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208678 lncRNA downstream 1335 23195173 ~ 23196196 (-) True G141370
TU208641 lncRNA downstream 141475 23055048 ~ 23056056 (-) True G141343
TU208617 lncRNA downstream 281579 22909257 ~ 22915952 (-) True G141331
TU208609 lncRNA downstream 303516 22888520 ~ 22894015 (-) True G141324
TU208599 lncRNA downstream 307398 22878732 ~ 22890133 (-) True G141319
TU208717 lncRNA upstream 360560 23570996 ~ 23571790 (-) True G141404
TU208815 lncRNA upstream 560641 23771077 ~ 23771457 (-) True G141477
TU208816 lncRNA upstream 561081 23771517 ~ 23772116 (-) True G141478
TU208817 lncRNA upstream 564481 23774917 ~ 23781508 (-) True G141479
TU208819 lncRNA upstream 572893 23783329 ~ 23783811 (-) True G141481
XM_043218618.1 mRNA downstream 88170 23100351 ~ 23109361 (-) True tdrd15
XM_043219198.1 mRNA downstream 98185 23068158 ~ 23099346 (-) True igf2r
XM_043219204.1 mRNA downstream 130158 23062273 ~ 23067373 (-) True slc22a2
XM_043219205.1 mRNA downstream 130165 23062273 ~ 23067366 (-) False slc22a2
XM_043219199.1 mRNA downstream 142800 23043100 ~ 23054731 (-) True si:ch211-140l13.3
XM_043220393.1 mRNA upstream 110738 23321174 ~ 23380628 (-) False cep85l
XM_043220391.1 mRNA upstream 110738 23321174 ~ 23374999 (-) True cep85l
XM_043218694.1 mRNA upstream 174135 23384571 ~ 23401391 (-) True mcm9
XM_043218695.1 mRNA upstream 177534 23387970 ~ 23401391 (-) False mcm9
XM_043219868.1 mRNA upstream 192634 23403070 ~ 23508544 (-) True fam184ab
unassigned_transcript_2512 other downstream 1081742 22115707 ~ 22115789 (-) True trnal-uaa_37
unassigned_transcript_2511 other downstream 1082411 22115038 ~ 22115120 (-) True trnal-uaa_36
TU208103 other downstream 1084487 22112602 ~ 22113044 (-) True G140972
TU207994 other downstream 1350614 21845806 ~ 21846917 (-) False LOC122325102
TU207987 other downstream 1356063 21841113 ~ 21841468 (-) True G140883
XR_006247154.1 other upstream 178733 23389169 ~ 23401391 (-) False mcm9
XR_006247155.1 other upstream 180029 23390465 ~ 23401391 (-) False mcm9
XR_006247156.1 other upstream 180031 23390467 ~ 23401391 (-) False mcm9
XR_006247216.1 other upstream 581641 23792077 ~ 23823050 (-) False tbc1d32
TU208856 other upstream 794251 24004687 ~ 24006665 (-) True G141502

Expression Profile