RNA id: XM_043219398.1


Basic Information

Item Value
RNA id XM_043219398.1
length 2718
RNA type mRNA
GC content 0.39
exon number 5
gene id hpcal1
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 16435221 ~ 16443831 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgtgtggtgtcagGTCTCTCGCTCAATGATGAGGTTTCAAGTGCGCCTTTGAGATGTTATGGAGTCTGTAGAATATTCTGCAATTTATAACTTTTTCGCTTCGCTTTTATTACGACAACTTTCCAACTTTTAGTCTACAAGATCGATCGGACCCGACGGACCAAGGCTACAGCTGGCAAATTGAGGGACAAACCAGCTCTGTCGTTTTCTTAGGGGGAGAAGCGAGGATCTGGGAACCGTCTGTGAGAGAGTTTCGTCATGGGTAAACAGAACAGCAAGTTGCGACCAGAGGTCCTCAATGACCTTCGGGAGAACACAGAGTTCACGGACCACGAGCTGCAGGAGTGGTACCGTGGCTTCCTGAAGGACTGCCCATCTGGCCACCTCACAGTAGAGGAATTCAAGAAGATCTACGCCAATTTCTTCCCCTACGGCGATGCTTCCAAGTTCGCGGAGCACGTGTTCCGCACCTTTGACACCAACGGCGACGCCACCATCGACTTCCGGGAGTTCATCATCGCCCTGAGCGTGACCTCGCGCGGAGGCCTGGAGCAGAAGCTCCGCTGGGCTTTCAGCATGTACGATCTGGACGGCAACGGATACATCAGCCGAGCTGAAATGCTGGAGATCGTACAGGCGATTTATAAAATGGTGTCATCTGTGATGAAGATGCCCGAGGACGAGTCGACACCAGAGAAACGCACAGATAAGATATTTCGACAGATGGATACAGACAACGATGGCAGACTGTCTCTGGAGGAATTTATCAAAGGTGCCAAGAGTGACCCCTCTATTGTCAGACTACTGCAGTCTGACCAAAGCACCTCTCGACAGCTGTGAATACAGATCAGAAGCAGCTGACAGGAAAGCGCTCACATGCACACTGAAAAGGCGGGATTTAATTAGGAAACGTAGTTTGGGTTATTAATGATGCACTTATATATCTttcctgctttaaaaaaaaagtttctgttgATGGGTGGTTACCTTTTTCATCAGTATTCCAGCCTGGTTTTGGAATTGGTATTGTTGAGCTGTCATGTCTGGGAATGGTCCGAATTTTAAAGAAGCCTTGAAATCAATTGGCAAAATGCAGGTATTTACACTTTTACTACTAATTCTGATACTGTTACTCTTTAGTGGCAAATGATtgcattaatcaaaaaaaagacaaaaaaaaaaacttgcacgACCTAAAGTTGTCAAGTGACCTCAAAGTGTCTTTAAGTGATGACCTAAAAAGAGTTatattttcacaattatttaCATTCCACTGAAAGCAGTAAATGACTAGTCAGTACCATGTGAAAATTTCTGACTATTAGACAAAGATGAAGTTCtgcttgtaaatatttcatttgttttgcattaattcGAATCAATCTCAAAGATCTCCACTATTTGCATGCTTTTGGCATGTTCTAAACATAGTATTTGTACTAGGTGTTATTTGTTGAAAGTAGGTTTTATACATCATGTGGTGTAGCTGCATTCGGAGAGGCCTGCTGTCCTGCCaattatgatcattttaaaaacatcagacTGTCATGttctactttattttaaaaaagaaagtattgCTTCTTTTACTGTGTAACAGAACATGCCAACAGTTTGGTGAAATTTTTTTTAGCCCTGAAAGCATGCGTTAAATTGATCTAAAGTGATAGTAAACATGCTTCCTTTGTTAGATTCCTATTTAGCGCAGttctttttttctacaaaaaatattgGTTTCATGAGCAGCAAATCTGTTTCATGgtttgaaagatcatgtgagACTGAACATTGAGCTTTGACATCACAggcaacatatttaaaatatactttttttatatatttcacaatattacttttattcattttgatcgAATAAGTGCAGCTTTTATGAGCATAAGATGTTTTCAAACCATTTGAAAACCAAACTTGTGAAGAATAATGAATGCCCActgttttccatgttttttgagttcaaatgtaacatttagatttaaaatctaatatacgttttttttttctcaggaaaCGACTCAAATTATAATGCGCATTGATGTTTTAAATCGATTCATGCATTCTTATTTTTCTGCTTTCGATTTGATATCGAAATGTCTTTAAGGCAACATAAACAGACAGTTACACTTTTTACGTTTCTGCCCTGAAGGTAAAAAAGCAGCCATCAGCCTTTAGGCCGGTCATGAATATTTGAACGCTGTTGTCTGTGTGGACATATGGAGCAGATAGAATGGCAGACAGGTGGTTAGTTTCTATTTGTCCTTTCACCAATCCAGTGTCAACATGAACAGTACAGATGCTGTTGAATAATAGCTCCATGGAATGCAATAGTAACACTTCACATCAAATATACAATCTTCAAGCTCTTTCTGTTAATGGAAACATTCTTTCACTCTTCTGCATGTGTGGTATGCCAGTGCtcttagtaattttttttctctgtaaaatgactgttgaagtgaaatgccaaaactaatatttgtactggatacatttatatattagatttatGAGTCATTTCTGATTTTGTATAGTGTTAACTGTGTTGTAAGGAACGTTGGTCGTCAAAAGTTATATTGCAGCTGGGAATGGGATGTCCAGCCATATTTTTGTGAAGCCAAAGCATCAGTGCGAATCTAAATGTTCCATCCTTACAGTGTATATGTACGTGCATGAATTCTCAATAAACCACTGATTCATAGGCAA

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23847 HPCAL1; hippocalcin-like protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205207 lncRNA downstream 109468 16323406 ~ 16325753 (-) True G138983
TU205210 lncRNA downstream 109468 16324662 ~ 16325753 (-) False G138983
TU205179 lncRNA downstream 218505 16214344 ~ 16216716 (-) True G138960
TU205173 lncRNA downstream 227220 16207070 ~ 16208001 (-) True G138956
TU205130 lncRNA downstream 442125 15992543 ~ 15993096 (-) False LOC122325494
TU205285 lncRNA upstream 6695 16450526 ~ 16451893 (-) True G139029
TU205289 lncRNA upstream 11053 16454884 ~ 16455403 (-) True G139032
TU205435 lncRNA upstream 399387 16843218 ~ 16845168 (-) True G139139
TU205444 lncRNA upstream 406723 16850554 ~ 16946540 (-) True G139145
TU205448 lncRNA upstream 415512 16859343 ~ 16860256 (-) True G139147
XM_043220534.1 mRNA downstream 68422 16347201 ~ 16366799 (-) True fndc1
XM_043219400.1 mRNA downstream 113802 16315018 ~ 16321419 (-) True LOC122324754
XM_043218621.1 mRNA downstream 120498 16310886 ~ 16314723 (-) True acat2
XM_043218920.1 mRNA downstream 124654 16302191 ~ 16310567 (-) True kif25
XM_043220576.1 mRNA downstream 133177 16299274 ~ 16302044 (-) True hebp2
XM_043219918.1 mRNA upstream 31520 16475351 ~ 16519770 (-) False usta
XM_043219917.1 mRNA upstream 34773 16478604 ~ 16519764 (-) True usta
XM_043219908.1 mRNA upstream 76612 16520443 ~ 16690139 (-) False sash1a
XM_043219907.1 mRNA upstream 76612 16520443 ~ 16690138 (-) False sash1a
XM_043219905.1 mRNA upstream 76612 16520443 ~ 16690138 (-) True sash1a
TU205233 other downstream 68449 16364810 ~ 16366772 (-) False fndc1
TU205232 other downstream 69754 16364810 ~ 16365467 (-) False fndc1
TU205229 other downstream 71909 16362131 ~ 16363312 (-) False fndc1
TU205141 other downstream 398968 16028253 ~ 16036253 (-) False LOC122324507
TU205127 other downstream 442125 15990874 ~ 15993096 (-) False LOC122325494
TU205287 other upstream 11637 16455468 ~ 16462216 (-) True G139030
TU205714 other upstream 902975 17346806 ~ 17428071 (-) True erh
TU205713 other upstream 982037 17425868 ~ 17428071 (-) False erh
XR_006247229.1 other upstream 1366443 17810274 ~ 17824201 (-) False swt1
XR_006247304.1 other upstream 1899641 18343472 ~ 18350122 (-) True adgrf3b

Expression Profile