RNA id: XM_043219400.1


Basic Information

Item Value
RNA id XM_043219400.1
length 2022
RNA type mRNA
GC content 0.47
exon number 8
gene id LOC122324754
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 16315018 ~ 16321419 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACACTGATGCTGTGCGGCTGAACATCGCGCACACGCTGGTCATGGCGGCCGCACTCCCCTCcgtctaaataaaaaaacgtagCAATTCCTCCTCCTAAGAAACTCACAATTTAACATAACTGCTTAAGATATCATATAGGAAGAAATACAAGTCATTCTGGTCGAGGCGAATCGGCTCTGGGATCAGAATGACCAATGAAGAACCTCTCCCGAAGAAGGTTCGCCTTAGTGAATCTGACATGAAGACCCTCACCCGAGAGGAGCTGTGCACAAGGTGGAAACAGCACGAAGCTTATGTCCAGATGCTTGAGgcaaaatatgctgatttaaactCCAATGATGTGACGGGTCTGAAAGAGTCTGAGGAGAAGTTGAAGCAGCAACAGCAGGAATCCGCGCGCAGAGAAAACATCCTAGTGATGAGGCTTGCTACTAAAGAGCAGGAAATGCAAGAGTGTACAACCCAAATCCAGTACCTGAAGCAAGTCCAGCAACCGAGCGCAGCTCAGCTGAGATCGTCCATGGTGGACCCAGCCATCAACTTATTTTTCCTCAAAATGAAGGCTGAACTGGAACAGACTAAAGACAAACTGGAGCAAGCCCAAAATGAACTGAGTGCCTGGAAATTTACACCTGATAGCCAGACTGGTAAGAAGCTGATGGCGAAATGTCGCATGCTGATCCAGGAGAATCAGGAGTTGGGCAGGCAGCTGTCTCAGGGGCGCATCGCCCAGCTGGAGGCCGAGCTCGCCTTGCAGAAGAAGTACAGCGAAGAGCTCAAGAGCAGCCAAGATGAGCTCAATGACTTCATCATTCAGCTGGATGAGGAGGTGGAGGGCATGCAGAGCACCATCCTGGTTCTTCAGCAGCAGCTGAGGGAGAGCAGGCAGCAGTTGTCTCAGATGAACACCCAAGGCACTTCTAGTGGAGCTGGTCCAAGCAGAACTTCACCTTCAGCGGCCTCTGAACCTTCCATTCAAAGCGAACCTGCAAACGCCTCCTGCTCGAATGTTGCAAAAGACTGCGGAAGGGTGTCCAACGGACCCTCCAACGGGAGCTCATCTCAGAGGGGCGCATCTGGGTCCAGTCTGTACAGGGAAGCGAGCAGCGCAGATGAAGATTACCCACCATCTCCATCTGTCTCCAGCCCCACTCATGGTGGCATGTCAAAACTGTCCAACCACTCAGAAGATGCAGCAAGCCAGAGGGGCGGAGAAGGGTACATGACTCAACTAAGTGCGGGCTATGAGAGCGTGGACTCACCAACAGGCAGCGAGACGTCAGTGACCCAGCACTCGAACGATACAGACTCCAATGCTGACTCCCATGAGGCCGCTGCCGTCTCCAAAGGCAGCAGGACTGCGGGTATGAGGCACAGCACTCAGAATGGCTTGGACTCATCTGCAGCAACAGTTGCCACCAACACCTCCAATGCCTCCACAGGGTCTGTTTTGTAACATTCTTAAAGTTTCACcgcttattttttgtttgtttttttttaaccacaacaAACAAGGAAATCACACACTTCAGGCCAGTTAGTTCTTGTTTGAGAAATGGTCAAATGCATCACTTTTGTTTTCTGCCCGACCTTCCATCATAACCTGTTTCAGTGCATTTGCTACATGCTCGAAGCTGATTACGTTTATAAAAATTAGCAACATTGCGTTTGTAtatttgaattcttttttttttttttttttttaaatgaatgacttttaaaaacatttttcctgtCAAAGTAATACGAACACTTGGTTCTGTACCGTTCATTTGCTCACTTGTTAGAACTCGGAAATCATTTAGCTACATGTGATGTATCAATGCTCAATTAAGTCTTGAAGCTGCAAGTTCAGAGAGTCCTTAGTTTCCTGATGTtgaactttttcttttgttcctcTACATGACGAGAGAAAACGTTTTGTTTGACTTGTGTGTAGTTTTTTGAGATGTATCTTGTTAAATTCTGATTTCAATCCTTTTCATGTACTGACCAAATATCAATAAAGAATTTTAATATGA

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0007049 cell cycle biological_process
GO:0008380 RNA splicing biological_process
GO:0005730 nucleolus cellular_component

KEGG:

id description
K22824 WTAP; pre-mRNA-splicing regulator WTAP

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205179 lncRNA downstream 98302 16214344 ~ 16216716 (-) True G138960
TU205173 lncRNA downstream 107017 16207070 ~ 16208001 (-) True G138956
TU205116 lncRNA downstream 124359 15816920 ~ 16190659 (-) True G138922
TU205130 lncRNA downstream 321922 15992543 ~ 15993096 (-) False LOC122325494
TU205007 lncRNA downstream 603965 15684176 ~ 15711053 (-) True G138862
TU205207 lncRNA upstream 1987 16323406 ~ 16325753 (-) True G138983
TU205210 lncRNA upstream 3243 16324662 ~ 16325753 (-) False G138983
TU205285 lncRNA upstream 129107 16450526 ~ 16451893 (-) True G139029
TU205289 lncRNA upstream 133465 16454884 ~ 16455403 (-) True G139032
TU205435 lncRNA upstream 521799 16843218 ~ 16845168 (-) True G139139
XM_043218621.1 mRNA downstream 295 16310886 ~ 16314723 (-) True acat2
XM_043218920.1 mRNA downstream 4451 16302191 ~ 16310567 (-) True kif25
XM_043220576.1 mRNA downstream 12974 16299274 ~ 16302044 (-) True hebp2
XM_043220577.1 mRNA downstream 12976 16299274 ~ 16302042 (-) False hebp2
XM_043219004.1 mRNA downstream 196574 16113092 ~ 16118444 (-) True LOC122324509
XM_043220534.1 mRNA upstream 25782 16347201 ~ 16366799 (-) True fndc1
XM_043219398.1 mRNA upstream 113802 16435221 ~ 16443831 (-) True hpcal1
XM_043219399.1 mRNA upstream 113802 16435221 ~ 16443829 (-) False hpcal1
XM_043219918.1 mRNA upstream 153932 16475351 ~ 16519770 (-) False usta
XM_043219917.1 mRNA upstream 157185 16478604 ~ 16519764 (-) True usta
TU205141 other downstream 278765 16028253 ~ 16036253 (-) False LOC122324507
TU205127 other downstream 321922 15990874 ~ 15993096 (-) False LOC122325494
XR_006247359.1 other downstream 393066 15921733 ~ 15921952 (-) True LOC122325620
XR_006247353.1 other downstream 394017 15920781 ~ 15921001 (-) True LOC122325614
XR_006247357.1 other downstream 394517 15920281 ~ 15920501 (-) True LOC122325618
TU205229 other upstream 40712 16362131 ~ 16363312 (-) False fndc1
TU205232 other upstream 43391 16364810 ~ 16365467 (-) False fndc1
TU205233 other upstream 43391 16364810 ~ 16366772 (-) False fndc1
TU205287 other upstream 134049 16455468 ~ 16462216 (-) True G139030
TU205714 other upstream 1025387 17346806 ~ 17428071 (-) True erh

Expression Profile