RNA id: XM_043219404.1


Basic Information

Item Value
RNA id XM_043219404.1
length 3182
RNA type mRNA
GC content 0.47
exon number 18
gene id dtnba
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 21556765 ~ 21581534 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGATGACATCCGGCTGTCCACGTACCGCACCGCCTGCAAGCTCAGATTCATTCAGAAGAAATGCAACCGTGATGCATCTGGTGGACGTGTGGAACATGATCGAGGCGTTTCGTGACAACGGTCTGAACACGCTGGACGTCTGCACTGAGATCAGCATGACTCGGCTGGAGACCATCCTCACCTGCATCTACCAGCAGCTAAACAAACGGCTGCCCACCACACACCAGATCAACGTCCAGCACAACACCAGCCTGCTGCTCAACTTCATGGTGGCGGCGCACgacagTGATGCTCAGGGAAGGCTGACAGTGTTTTCTGTGAAAGTGATGCTCTCTATGCTGTGTGGAGGGAAACTGGTCGATAAACTTCGCTatatTTTCTCTCAGATATCTGATACCCACGGGGCGATGGTGGTATCCAAGTTTGACCACTTCCTGCGGGAGGTGCTGAAGCTGCCCACCGGCGTATTTGAGGGGCCATCGTTTGGCTACATGGATCACTTCGCCAGATCCTGCTTTCCTCAACAAaagaaGGTGATGCTGAACATGTTTCTGGATACTCTGATGTCAGATTCTCCTCCTCAGTGTCTCGTCTGGCTTCCTCTGCTGCATCGGCTGGCAAACGTGGAGAACGTGTGTCATCCGGTGGCGTGCTCGTGCTGTCGCTCAGAAAGCATGACGGGATTCCGTTACCGCTGTCAGCAGTGTTTTAACTATCAGCTGTGTCAGAACTGTTTCTGGCGAGGTCTCGCGAGCGGAAACCACAACAACCAGCACGAGATGAAGGAGCATTCATCCTGGaAATCTCCAGCCAAGAAGCTGGGTCGTGCCATCAGTAAATCCTTGGGCTGTGTGCCAAGCAGAGAGCCGTCCCATCCCGTCTACCCAGAATACCCCGAGAAACCCCTCAACCTGTCCAATATTGTtcCTCCTCGTCCAATAGGAAACATGAATGAACCAGTTCTGCCCCCGTCTGCAGGCCAAAGCCCCACTAAGAGACCGCCGACTCTAGCTGCAGCTCAGCGTATGAATGAGGAACATGCTCTGATCGCAGCGTATGTGAACAAACTCCAGAGCAGCCCtcgtgcATTAGACAGTCCTACAAGAACGGATGAAGAGCACAAACTCATCGCTCGTTACGCCTCTCGTCTGGCCACAGATCCTGGACACACAGGAAGACCTTCAGACTTCAGCTACGACACCAACAAACAGCAGAGAGAACTGATCCTGCAGCTGGAGAACAAGAACAGGGAGATTTTGCAGGAGATCCAGCGTTTGCGAGCGGAGCATGAACAGGCATGTCAGCCGACTCCAGAGAGAGTCCAACAAAACCCGACCCTGCTGGCAGAACTCAGACAGCTCagacaGAGGAAGGATGAGCTGGAGCAGAGGATGTCATCTCTTCAGGAGAGCAGGAGAGAGCTCATGGTGCAGCTGGAAGGACTCATGAAACTACTGAAGGCTCAAGCTGCCGGCTCCTCCCCCAGCCACGCCTCCCCTCGTTCTATGCAGATGCCCATTCGCTCTCCCTCATCGGGCCTCACCCCCACCCATGGAGGCCACACCCCCACTCACGGGCCCCAGGACTCTTTAGCTGGAGTGGGTGGAGATGTTCAGGAAGCATTTGCTCAGGGACCTCGCAGAAACCTGCGAAATGATCTCCTGGTGGCAGCAGACTCCATCACAAACACCATGTCTTCACTGGTCAAGGAGCTCAACTCAGAAGATGGAGGAGAAGAGGATGAGAGACTGCTGCAGAATGGCAAAGACAGAGGTTAAGCCAAATATGAAGCAAGCAGTGTCATGTCTGGCATCACCTTGCAAACGCATCACCGCAAAGAAAATGACCTCTGAACCCAgactcagccaatcagagagtgGTCAGGGATTTGACTTCCTGTGGATTGCTTGAGaaggaaaatgtattattgtttttgatgttttttttttttttactcttttgttTGTGAGactaaaatgcagttttgaggGTCTGTGTCGCGGACCTGCTAGTTTGGATAGTTATTCTCGTTTCAATTTCGTAGTTGATTTTGTTCGAGTTTGAAAGCTTTTGAAAAAAGGATTCACCCAAAGACGTGTCATATCGGACAAGAACGAAACGCTGGGGAGGAAATGGAACGGAACGCTAAAGAAAGTGGCAACCGATTGAAGGACGAGCGTGATGGGTTGATTGGCTGGCTGTGGTATGTGGGCGTGGTTTGTTGGCTGTGGGTGTGGTCATGTTGATTTCAAGGACGCAGTTGCTGCAAATGCAGTATAAATGACCTTCTAAAGGagctaaagtaaagaaaaaggtCGCGTTCagtactgtaatttattttcgattcgctttttttatttattttctgtagaCGGACAGCATTTCAGTGTAcatttgagaaaatattttggtcatttcaaatatttgagtTCAGATTTTCAAGTCCAGTTcagcatttatgtatatttaagatcaaattgatttagttttatagattttcaaatagGTACTTTATTAAAGAGGTGGATGTACTGTGCTCCTGTTACTGGAGAGTTTTACCCATTGttaattttgtttagtttttttttctagaatgaCTGTTTGTAGTCAATAATTCCTGTGAATGGACATTTCTTACAAACATTTGCGCACACACGTCTGatctgctgtgtgtttttctggaggtgtgtgtgtgtgtgtgtgtgtgtgtatttgtgtgccTCTCTATAGCCGTGTGTTTGTGCAACGCTGGAATGTGAATCATATTGATGccttcatttcaatttaatctTAAATATCTGCCAAAAAAAACGTCTCGttgatttagtttgtttgaaGTATTTCATCTTATTTACTCCGATAAAAACAACACTTTGTTTATTCATGAGCTCATTTGTTTCTGAATCTCTGCGTCATTGATTCTACCTGTAGTACATGGGACTtaatgacatcacttcctgtgccCTTCGGATCAAGAGCTCTTCTGTGAAAGCTGGCTGGTTTGGTGGAGGCGATCATTACGGTGCCGGTAGCCGCAGTGTTACGCTCTTTCTACCGAAtaactttttcatatttttttaagatgcaagTTTTGCAGAAACGAGGCCATGATTTACATGCATGTGATTTCAAGTGATGATTTGTTgtggtcaaaataaatgatatcttgggaaaaaaaaaa

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247302.1 lncRNA upstream 12948 21551685 ~ 21553114 (+) True LOC122325460
TU207716 lncRNA upstream 47086 21516791 ~ 21518976 (+) True G140691
TU207742 lncRNA upstream 77819 21483605 ~ 21488243 (+) True G140707
TU207743 lncRNA upstream 82785 21482627 ~ 21483277 (+) True G140708
TU207709 lncRNA upstream 131266 21434593 ~ 21434796 (+) True G140686
TU207758 lncRNA downstream 54975 21636509 ~ 21637194 (+) True G140721
TU207733 lncRNA downstream 116887 21698421 ~ 21699258 (+) True G140698
TU207804 lncRNA downstream 151041 21732575 ~ 21735672 (+) True G140747
XR_006247308.1 lncRNA downstream 154432 21735966 ~ 21738747 (+) True LOC122325564
TU207854 lncRNA downstream 258689 21840223 ~ 21840465 (+) True G140784
XM_043218611.1 mRNA upstream 16038 21534504 ~ 21550024 (+) True LOC122324300
XM_043218612.1 mRNA upstream 16038 21534504 ~ 21550024 (+) False LOC122324300
XM_043220447.1 mRNA upstream 138922 21414861 ~ 21427140 (+) False tfap2b
XM_043219701.1 mRNA downstream 2078 21583612 ~ 21621071 (+) True dnmt3aa
XM_043219509.1 mRNA downstream 75129 21656663 ~ 21664934 (+) True gpatch2
XM_043219510.1 mRNA downstream 75129 21656663 ~ 21664934 (+) False gpatch2
XM_043219512.1 mRNA downstream 86532 21668066 ~ 21680920 (+) False esrrgb
XM_043219511.1 mRNA downstream 87451 21668985 ~ 21680920 (+) True esrrgb
XR_006247231.1 other upstream 367443 21168775 ~ 21198619 (+) False ipo13b
XR_006247313.1 other upstream 426264 21139684 ~ 21139798 (+) True LOC122325571
XR_006247327.1 other upstream 426934 21139014 ~ 21139128 (+) True LOC122325586
XR_006247312.1 other upstream 428297 21137649 ~ 21137765 (+) True LOC122325570
XR_006247406.1 other upstream 429209 21136739 ~ 21136853 (+) True LOC122325673
TU207855 other downstream 262612 21844146 ~ 21844701 (+) True G140785
XR_006247241.1 other downstream 890252 22471786 ~ 22476774 (+) False ubxn2a
TU208163 other downstream 925233 22506767 ~ 22517675 (+) False fkbp1b
unassigned_transcript_2513 other downstream 1518672 23100206 ~ 23100288 (+) True trnal-cag_35
TU208810 other downstream 2491337 24072871 ~ 24074423 (+) False G141475

Expression Profile