RNA id: XM_043219414.1


Basic Information

Item Value
RNA id XM_043219414.1
length 7930
RNA type mRNA
GC content 0.52
exon number 38
gene id cdc42bpb
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 10494086 ~ 10550573 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aattacgTCACAAACAGCACTGGAGAATCGGTTACATTTGTGGTACAATAAAACCGAacaaaatgtgataaaatatttaaatatgtaaccatattaaaatataatataaaccgtacatataaaatattattaacaatacTGATATTACATTAGGCACGTGTATATTCTGTCATAAAAAGTAGTATTGTCATCTGAAAGCAattattgcattgcaaaaaaacgcacgcagaaaaaaaacacgacCCCCACATGAAAGCAGCAGTTACGTTTGCAATTTCTGTCTCACATTTTTGTTGCTTAACAGAGTTATTCAGTCGTCCGAGTAAGAGGCTCGTGATGAGGTCAGCGCTAGCTGCCTCCCTGTGTCAATCAAGCAATGGCGTCATGTATCCCCAGCGCTTCCGGTGCGGGTGGGCGGGGCTCCGCTATCCCGGTCTGGATTCTTCACTCGGGAGCGCGAGACGGGCTCAACGCGAATGCAGCCATATTCGGCTTCACCGAGGAGCACACCGGCAGCGCAGGCTCGCACGCGAGGGTTCGCCTACTTCGAGAAAGCGCCCAGACCCGGTTGCGCGGAGGGCGCGTTTGTGTAGGTTGAAGGCGCGCGCGGTCCTTCATTAGGGAGTTTATAATTGAAGATTTCCCGTTCGGCGGAATGAGCGTCCAGTCATCCTGAGGCTCGACGGGAGAAAAAGCCCGACACATCCCGCAAAGTGGAAAGTACAGATTTGTCCGGATTAAGGCAAATGGAGCCGACGGGGCCTCGGGAGTGAGGAGGGGGTGGAGGCGCTGGAAACCAGCGGACAACAACGGGGTTAAGGCGCGTTAGGTCTTCGTTTATCGGAGCACAATGTTGGGCACATTTTGCTAGCTGGCTAGCTGGATGGCTGGCTAGCAGTTGGAGTCTGGGACTTCCGAGCTCCGCACGTTTCAGCCAGATCGGTCTCGTTCGTGTGTGCTTATAACGCTAATCCCCGCGGTGCGAAATTCGACAAGAGTCGCTCGATCCTGTCTGGCTCCGGGAGTGGTAGCCAGGCCGCTCAGTTGGTAGAAAATGTCCGCGAAGGTGCGTCTGAAGAAGTTGGAGCAGTTGCTGCTGGATGGCCACCAGAAAAACGACAAGTCATTGAGCGTGGAGACGCTGCTGGATATTCTCATATGTTTGTACAACGAGTGCAGCAACTCGCCCTTAAAACGGGAAAAACACGTGACGGACTTTTTGGAATGGGTGAAACCATTCACAACCACCGTGAAGGAGATGCGCCTTCACAGAGACGACTTCGAGATGCTCAAAGTGATCGGCAGGGGAGCCTTCGGAGAGGTTGCTGTGGTGAAGATGAAACACACGGAGCGTGTTTACGCCATGAAGATCCTCAACAAGTGGGAGATGCTCAAGAGAGCCGAGACGGCGTGTTTCCGGGAAGAGAGGAACGTCCTGGTGAATGGAGACTGCCAGTGGATCACCACCCTGCATTACGCTTTCCAGGATGACAACTATCTGTACTTGGTGATGGATTATTACGTGGGAGGCGACCTGCTGACTTTGCTTAGTAAATTTGAGGACCGACTCCCGGAGGACATGGCCAAGTTCTATGTGGCAGAGATGGTGCTCGCTATCCACTCCATCCATCAGCAGCGCTACGTACACAGGGACATAAAACCAGACAACGTGTTACTGGACATGAACGGTCACATCCGTCTCGCTGACTTCGGCTCCTGTCTGAAGATGATGCAAGATGGCACGGTCCAGTCATCAGTGGCTGTGGGCACCCCAGATTACATCTCCCCTGAGATCCTGCAGGCCATGGAGGACGGCATGGGGAAATATGGGCCGGAGTGTGACTGGTGGTCTCTAGGCGTTTGTATGTACGAGATGCTGTACGGCGAGACGCCCTTCTACGCTGAATCTCTGGTGGAGACCTACGGGAAGATCATGAACCACGAGGAGCGTTTCCAGTTCCCCTCTCACATCACGGATGTGTCAGAGGAGGCTAAAGACCTGATCCAGCGGCTGATCTGCAGTAGAGAGCGTCGGTTGGGTCAGCACGGTATCGAGGAGTTCAAGAAGCACCCTTTCTTCTCCGGCATCGTCTGGGAGAACATTCGCAACACAGAGGCTCCGTACATCCCTGACGTCAGCTCTCCCTCAGACACCTCCAACTTCGACGTAGACGATGATGTGCTGAAAAACCCGGACATCGCTCCCCCGGTATCTCACACAGGTTTCACCGGGCAGCACTTGCCATTCGTGGGCTTTACCTACACCACAGAAAGCTGTTTCTCAGACCGCGGAAGCGTGAGGAGAGTGGCGCTGACGGATGGAGGTGCCGGGGAGGATCTCCAGGATGGAGGTCTGCAGGTGGAAGCCTTCGAGAAGAGGATTCGCTGTCTGGAGCAAGAGAAACAGGAGCTCAACCGCAAGCTGCAGGAATCCACTCAGGCTGTTCAGTCCCTCCATGGCTCTGGGCGCGGGGCCGGCACACTTGGTCGTgataaagagattaaaaaacTCAATGAGGAAATTGATCGGCTCAAAAAGAAACTGGCAGACTCTGATAGGCTGGAGCACCAGCTCGAGGAGGCAGTGACTCTGAGACAGGACTTTGAAAGTTCCTCCACCAAACTGAAGGCCCTGGACAAACAAGTCAAAGCTCTCAAGCAGGAGAAGGAAGATATCCATAAGCAACTGGTGGAGTCTCTGGATCGCCTGAAGTCTCAGACTAAGGAGCTGAAGGACGCCCACCAGCAGAGGAAGCTGGCCATGCAGGAGTTCTCCGAGCTGAACGAGCGCATGGCCGAGCTGCGCTCGCAGAAGCAGCGCCTGTCGAGGCAGCTGCGTGACAAGGAGGAGGAGATGGAGGTGGTGATGCAGAAGATCGACGCCATGCGCCAGGACATCCGCAAAACCGAGAAGGCCCGCAAAGAGcTGGAGTCTCAGCTGGAGGATGCGTGTGCCGAAGCCTCTAAGGAGCGTAAGCTCAGAGAGCACAGTGAAGTCTATTCTAAACAACTGGAGAGCGAGCTGGAGACGCtcaagGTCAAGCAGGGAACAGGTCGTGCCTCAGGTCCCAGTTCAGAGACTCAGCAGGAGCTCACCAAGCTGAAGTCAGAGCTGGATAAGAAGGTGCTGTTCTATGAGGAGGAGCTGGTGAGACATGATGCCAGCCACACTTCAGAGCTGAAGAACCTGAGGAAGGAGCTCCATGACTCTGAGGGTCAACAGCTGGCACTGCATAAAGAGCTGCTGGTGCTCAAAGACAAACTGGAAAAGACCAAAAGAGAGCGGCGAGCAGAGATGGACGAGGCCATGGGTACTCTGAAGGAGAAGTTTGAACGTGAACGCAACCTTCTGAGTGAAGAAAACCGTAAACTCACTGTAGAAACAGACAGGCTCTGCAATTTTGTGGACAAGCTGACGGCTCAGAACAGGCAACTGGAGGACGAGCTCCAGGATCTGGCATCGAAGAAAGAGAGTGTAGCCCACTGGGAAGCACAGATTGCTGAGATCATCCAATGGGTGAGCGATGAGAAAGATGCACGTGGCTACCTTCAGGCTCTGGCTTCCAAGATGACAGAAGAGTTGGAGTCTCTGCGTAGCTCAAGCCTGGGATCCAGAACACTGGATCCTTTGTGGAAAGTGCGCCGCAGTCAAAAGTTGGACATGTCTGCCCGTCTGGAGCTGCAGTCGGCCTTGGAGGCTGAAATCCGTGCCAAGCAACTGGTTCAGGATGAGCTGCGCAAGGTCAAAGCTGCCAACATCTCTTTCGAGAGCAAACTTAAGGACACAGAAGCCAAGAACAAAGATTTGGAGGAACAGCTGGAGAATATGAAGAAGGAAATGGAGAACCGCTCACGATCAGACAAAGGCCTGAAACAGCCTGACTTCCAGGAATCCATCTTTGAGTACTTCAATACCTCTCCCCTCGCCCATGACCTGACATTCAGAGACTCTGTCTCCTCCTCATCCGCATCTTCTCTGCTTGCATTTTGGGATGAAACAAGCTTCGTCGGTGATGTGGACGCCACACCCCAGAAGACAGACCTCCCTACTTCCTCCCCATCAGTGGCTTCAGAACAGGATGAACCAGTCAAGCCTCAAGCAACCACCCCTGCTGCCCCTTCTCCGATCTATCAGCCCACGCTCATTGCACCAAAGCCTAAAGCTCATCAGCTGAGCATTAAGACTTTCTCCAGCCCGACCCAGTGCACTCACTGTACCTCCCTGATGGTGGGCCAGATCCGACAGGGTTACGCCTGCGAGGTATGCTCTTTCATCTGCCACGTGTCCTGTAAAGACAACGCGCCCCAGGTTTGCCCCATTCCTCCGGAGCAGGCCAAGAGGCCTCTGGGTATTGATGTGCAGAGGGGCATTGGCACAGCGTACAAAGGTTTTGTCAGGATCCCGAAGCCCACAGGAGTGAAGAAGGGCTGGCAGAGGGCATATGCTGTAGTGTGTGACTGTAAACTCTTCCTCTATGAGGTGCCAGAAGGGAAGTCCACTCAGCCTGGGGTGATGGCCAGTCAGGTCCTCGACTTGAGAGATGAAGAGTTCTCCGTAAGCTCTGTGTTGGCATCTGATGTGATCCATGCCAATCGTAAAGACGTCCCCTGCATATTTAGGGTAACATCATCAGCTTCAAATTCTCCGGTCCGGCCGGTGCCTCTGCTGGTGTTAGCCGAGAGTGAGGCGGAGAAGAGGAAGTGGGTGGGCATCCTAGAGGGCCTGCAGAACATCCTGGCCAAGAACCGCCTGAAGAACCGTGTGGTGCATGCCCTGCATGAGGCCTACGACAGCAGCCTGCCTGCCATCAAAACTACACTCTCTGCTGCCATCGTTGATCGAGAACGGATTGCTTTGGGGACGGAAGATGGCCTGTTTGTAGTCGAGATCACCAGAGATGtcattgtTCGTGCTGCTGACTGTAAAAAAGTTTGCCAGATTGAGCTCATGCCCAAAGAGAAGTTGGTAGCCCTGCTTTCTGGCCGCAACCGCCATGTCCATTTATACCCCTGGGCGGCACTGGAGGGTGCGGATGTTAATTTTGATGCCAAGTTGACTGATACAAGAGGCTGCCAGGCTATGACCATAGGTACCCTACGCCCTGGTGGCCCAGCTTGTCTCCTAGCAGGTGTGAAGCGGCAGGTCATCTGCTACGAAATCACTCGTGTAAAGCCCCATCACCGTAAATTGTGGGAGGTGCAGGCGCCTGGTATCGCCCAGTGGCTGGGTATTATTCGTGATCGGCTGTGCGTGGGTTACCCGTCGGGCTTCGCTCTGCTGGCCATGCAGGGAGAGTCCTCACCGGTGAGTCTGGTGAGCCCCGGAGATCCCTCACTAGCCTTTTTGGCCCAGCAATCCCTGGATGCGCTGCACGCTATGGAGGTGGGGGCCAATGAACTGCTGCTGTGCTTCAGTCAGCTGGGAGTGTATGTGGACGCGACGGGACGGCGCTCTCGAACGCAGGAGCTGATGTGGCCCGCCACACCACTTGCCTGCAgCTCAAACTCGAACTACCTTACGGTGTACAGCGATTACGGAGTAGATGTGTTTGACGTTCACACCACAGAATGGGTCCAGACCATCTCATTAAGAGGAATTCGGCCCCTGAATGTGGAGGGCAGTCTGAACCTGTTCGGCTCCGAGCAGCCCCGTCTCATCTACTTCAACAGCAACTCCTCAGATGGTTGTGACCTGGCCATCCCCGAGACCTCAGACAACAGCAAGAAGCTGATGGTGAGGACTCGCAGCAAGAGGAagttcctttttaaaatacCAGACGAGGAGCGGCTGCAGCAGAGGAGGGAGATGCTGAGGGATCCTGAAATAAGATCCAGGCTGATCTCCAACCCCACCAACTTCAACCACGTGGCTCACATGGGCCCAGGCGACGGCATGCAGGTCCTCATGGATCTTCCTCTGCAGCAGAGCGAGACTCCCTTCCCCTCATCCTCTCGCCACCATGCCCTGATCTCCCCTCCGACCAACTTTGAGCACGTCTATCACATGAGTCCCGTCTCTGCCGGGCTCTATCTGCAGAAAGAGCCTTCTTCCCAGCAGAGCCTACTTCagttctcctcttcctcctcctctccttccACATCCTCCCTGGGAAGGAGTGTGATGCCCTCTTCTCAGGACGACCTATCTAAAGACAAGCCTCGGCCTCTGTCCAGCATCTCACGGCAACAGAGGAGTAAGACCCACATCACCCGCACTGCCTCAGGAGGAGGAGATTTTGGAGGAGCAGGGTCGTCTCGCAGTATTTCTGATCAAGATCAAGACTTTGAGAGAGAGCCCGACTCTGACTCGACCAAACATTCCACCCCCTCCAACAGCTCGAACCCCAGCAGCCCCCCGAGCCCTAACTCTCCCCACCGCAGCCAGCTCACTCTGAACAGCCTGGATCAATCCCTGGACGGCTGAAAACGGACAGCTCCCCGTTCTTTCACCCTCGCGCGCACCCTAGACACGCCCTCCCATATCCATCCGCTCTGCTAGGACTCACTAAGAAGTGCCAAGACTCTCACAAAAAGTCACCCGCTCATCCACCGCAAGGGCCAGAGGTCTACCCCCGATCCTGCTGCTGGGTAGACCTCTCAAGAGCAGCGCTGGGTGTGTGCTGACAGGCTCCGGCGAAGCCACCAAACAGGACAAAAAGAAACTGCCCCCTGGTGGAATTGTCATGGTATTACACTAACTGGGTCAGATTAGCAGTATggcgggacttttattttgttttaaatctgcATATCATGCCATGCTcctgcaagtgtttttttttttttttttaattattattatttacgttagtaaacaaacatgcattacaTCTGCTGTGTCAGAATTGCTTCTGGATCTTAGCTTCCCTTCAGAGTACCGAATTGACGGGAAAAGAGACTtcatatgctgtttttaaatgtatattatcaGGAAAACTCATCAAGAGGGGGGGGAGAGAGGAGCTTATCGGGAAGAAAAGAAACCGAGGACGATACAGAACTTGGACCAGTAACACGATTCGTCACGGACCGgtgaaaacatctcatttgagCAATAGATCGGTGGCGAGAGACTTCGGGGGCCAAACCAGAGGGCACTTTTATTGTTATGtaatttctctttctctctcaaagtTCTGCATTTAAACCAGCCTTtataatattcatgttttaacTTAGATGTTTCCCACAAAGATATCTAGTTCAGCTTATCACAAAAAagccagaaaaaaagaagactttACTTATAGATAAgtgttttaatacaaatacaaaggAGAACGGCACAAAGCTATTCGTAGGATTTCAGTAGTTCCTCTTAAGCTGCTACTGCTGCTTTGTgtgctctatttaaaaataaaagttacaaaaagTATATATGTGATAAGGTTATCTCACCGTAGCCATGCTCGGATTCTGGTTTCTGATGTTTGACACAAATGCGAGCAGCCATGTGGGACCGTCACTGTTAAAAAGCCTCCTATCAGGACACTGGTATGAGTTTGTTTGGTGGCGTGCTTAAGATCCGCAGGCATGGCCGGCATATCCATTATCATTCGAGTGTGCCTTCAGTGCCAACTTTCCTTCCCTAATAAACTGTCCGCTAAAGCATTTCAGTGGTTTTGACAAGGCTGACGGTAATGTATTGTTTCCCCCTTCACCCCTCTGAAACACTGTAAGACACTTGCAcacgtttttcttttctttttttttagtctaaGGAAATGATTTTGCGTGAACGGTTTTTCCTGAACCTCCTTTTTCTCCCCCATACTTCACTCGTCCGCTTCATCAGATGGAAGTTAATCCTCGGAACACTACTGCTTTtactttaaaagaagaaaaaaaagaatcacagGTTGAAATCTTTGTAATTATTGACTTGTTAGCCACATAAAtttgaacaaacaataaaagagTACCTGTTGTG

Function

GO:

id name namespace
GO:0031532 actin cytoskeleton reorganization biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K16307 CDC42BP; serine/threonine-protein kinase MRCK

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202991 lncRNA downstream 35296 10458253 ~ 10458790 (-) True G137441
TU202868 lncRNA downstream 215900 10277939 ~ 10278186 (-) True G137356
TU202860 lncRNA downstream 258780 10232024 ~ 10235306 (-) True G137348
TU202858 lncRNA downstream 285501 10208074 ~ 10208585 (-) True G137346
TU202778 lncRNA downstream 742749 9749677 ~ 9751337 (-) True si:dkey-5n18.1
TU203000 lncRNA upstream 6172 10556745 ~ 10562461 (-) True G137448
TU203028 lncRNA upstream 59270 10609843 ~ 10611455 (-) True G137461
TU203030 lncRNA upstream 68362 10618935 ~ 10620941 (-) True G137462
TU203035 lncRNA upstream 80148 10630721 ~ 10631264 (-) True G137465
TU203042 lncRNA upstream 83277 10633850 ~ 10634771 (-) True G137466
XM_043219411.1 mRNA downstream 851 10484506 ~ 10493235 (-) True vipas39
XM_043219413.1 mRNA downstream 9726 10477689 ~ 10484360 (-) True gpr132b
XM_043220442.1 mRNA downstream 31649 10459191 ~ 10462437 (-) True psma8
XM_043220519.1 mRNA downstream 508182 9983522 ~ 9985904 (-) True LOC122325472
XM_043218587.1 mRNA downstream 742703 9749816 ~ 9751383 (-) False si:dkey-5n18.1
XM_043219039.1 mRNA upstream 70607 10621180 ~ 10627044 (-) True enpp5
XM_043219280.1 mRNA upstream 87653 10638226 ~ 10648648 (-) False ccm2
XM_043219279.1 mRNA upstream 87653 10638226 ~ 10648647 (-) False ccm2
XM_043219278.1 mRNA upstream 87653 10638226 ~ 10648647 (-) True ccm2
XM_043219281.1 mRNA upstream 87653 10638226 ~ 10645293 (-) False ccm2
TU202840 other downstream 555209 9937965 ~ 9938877 (-) True G137330
XR_006247224.1 other downstream 1159025 9330137 ~ 9335061 (-) False pcsk9
XR_006247226.1 other downstream 1215121 9255548 ~ 9278965 (-) False bloc1s2
TU203003 other upstream 16724 10567297 ~ 10570737 (-) True G137451
TU203048 other upstream 171348 10721921 ~ 10724069 (-) True G137469
unassigned_transcript_2506 other upstream 381989 10932562 ~ 10932644 (-) True trnal-cag_34
TU203246 other upstream 582053 11132626 ~ 11136588 (-) False LOC122324412
TU203250 other upstream 624621 11175194 ~ 11182169 (-) False LOC122325476