RNA id: XM_043219435.1


Basic Information

Item Value
RNA id XM_043219435.1
length 8311
RNA type mRNA
GC content 0.50
exon number 20
gene id sipa1l1
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 14907899 ~ 14971290 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGAGCAGCGGCTTGCAGTGACCTCATCAGCAGCTGCAGCGCGAGGCGGAGCTGCAACTTTTGTATGAACTTCGAAGTTGAATAATTGTGAACGAGACGCTGGGGCCAACGGCGGTGCCGCTGGAGTAGATACAACAATACAGCGAAAAATCTCCGGGAAAACGGCAGGAATAACGGCCGCACGCAGACTGCACTCCGCTGGCGAATATTACGAGACGGAGAGACGCTCGTGTCGGACTTTTATCGCAAGATTTTGTGGGAGAAGAGACCGCACGAGAGCAGCGAGAGGTGGAGAGAGAAGAAGatCTACATAAAGGGATGAGAGGAGGAAGGTCAGATCACCTAATGGTCAGCACACATGCCTGATTCAGGTTCACTTTAAAGTTGACATTCATCGTGCAATTATCTGTCCTTCATTCTCTGGCCTCTCTAGCTGAGTGGCTGCCCATGTTCCCCAAGCTTTGTTATTTCAACTACACTGCGGGCATGCTCCAGTGCTGAGCTCCGCCACTTAGCCATACCATGACCAGTCTAAAGCGTTCACAGACCGAACGCTCTGTGGGCGGCTCTGTTCCCGCCACAGATGAGTTTTATACTCGCCGTCTGCGCTTGCCTAATGGAGGCGCGCCACCCCCTCGCAGTGAAAGCACACACTTGACTGGCACGCCCGGGGTTCCCAAAATGGGCGTCCGAGCGCGGGTCGCTGACTGGCCCCCCAGGAAAGATGGCGGCAGTGGAGGAAGTGGAGGAGGGGGTGGAAATGGAGGTGGGGTGTGGCACATCACAGTAGAGACGGATTCCCCTTCCACCACAACAGGAAGTGCCCAGAGCAACTTGTCAAGCAAGCTCGGTCACCTGATAAGCCCTCAGGACTCCTCCATGCTGCGGAACATTCACAACACTCTGAAGAACAAGATGCAAAGCAAAGGCAAAGACAATCGCTTCCTCTCACCTGATGGGTATCTCGGGTCCCCACGGAAGGGTATGCGGCGTATACGGCAGCGCAGCAACAGCGACATCACCATAAGTGAACTAGACGGAGATGGAAGCGAGGGCTGGTCTTTCTCAGGATGGACGCCCATGCATCGAGAGTACGGCAGTACCTCGTCCATCGACAAACATGGTGTATCTGGTGAAAGCTTCTTCGACATGCTCAAAGGCTATCAGACCGATGCTCCAGACCAGCGCAGCCCTGCCCCTGAAAAGTTAAGCGAATTGCTGACAGTAGCTCATAAACAAACTGCCCTCGACTTGCCTGATGGGCCTCTTGGTCCTCCTCGTGGCAGTCCAGCCAGTCgcctgaaagaaagagaaaaacacatgaAGAGGCGTTCAAAGTCAGAGACGGGTGGAGAGTCCATATTCCGCAAGCTACGTAGCGTCAAAGCCGAAGGTGATTCGTCACGTGCTGGTTCCGATGCGGAGGACGGAAAATCTGATGATATAGGTCCTCCTCCTAAACCATGGGTCTGCCAGAAAGGTTTTGCTCACTTTGATATCCAGAGTATTCTGTTTGACCTTAACGAAGCTGTGCAGAGTCGGCAAAGCGCTGTGAAGCGGAAGAATACCACCACCGGTGCCTCTGCTGCAGCCGCGGCCTCGGCCTCCACCACGTCCTCGCTGTCCTCCACCCAAAGCGGGGCTTACGGCTCCCCTTGTGGCAGCCAGGAAGAGCTCAACATCAAGGACGGGCCTTCTCTAGACTCAGGTGATGACAAGAGCAATGATTTGGTCCTCAGCTGCCCATGTTTCCGAAACGAAATTGGTGGTGAAGGAGAGAGGAACATCAGCCCTTCCAAACAGGGCAGTATCGGCAGTGGTGCCTCTAGCTCTTCCAGAGATGAAGAAGGGTCCCCTGAAAGAGCTCCCAACACACATTTTAGCAATGCAGGAGTGGCTGTTCTTGAAGCCCCCAAGGATGGCAAGACTCTTCATCATGATCGTGGAAAGAGCAACATAGTAGAACATGTGGACTTGGGTGCTTATTATTATAGGAAGTACTTCTATTTGAGAGAGCACTGGAACTACTTGGGTGTTGATGAAACGCTGGGACCAGTAGCTGTCAGTATTCGTCGGGAAAAACTGGAGGATCACAAAGAGCACGGGCAGCAATACAACTACAGAATCATCTTCAGAACCAGTGGGTTAACAACCTTACGGGGGTCAATTTTGGAGGACGCTGTGCCCTCCACCTCCAAGCATGGCTTGGCTCGAGGCCTGCCTCTAAAGGAGGTGTTGGAGTATCTTGTACCTGAGCTTAATGCCCACTGCCTCCGTCTTGCTCTTAACACACCTAAGGTCACAGAACAGCTGATGAAACTGGATGAACAGGGGCTTAGTTTCCAGCTGAAGGTGGGAATCATGTATTGTCAGGCCGGCCAGAGCAGCGAGGAAGAGATGTACAATAATGAGGCAGCAGGTCCAGCCCTAGAAGAGTTCCTGCAGTTGCTGGGGGAAAGGGTGCGCCTTAAAGGTTTTTCCAAGTACCGTGCCCAACTGGACACTAAAACGGACTCTACTGGAACGCATTCTTTGTACACCACTTTTAAAGACTATGAGATCATGTTCCATGTGTCTACAATGCTGCCCTACACACCCAATAACAAACAGCAGCTGTTAAGGAAAAGACACATCGGAAACGACATCGTCACAATCGTATTTCAAGAACCTGGAGCAAAGCCCTTTAGCCCCAAGAACATCCGCTCACACTTTCAGCATGTCTTTGTGGTTGTACGAGCGCATAACCCCTGCACCGAGAACACCTGCTACAGTGTGGCAGTGGCTCGCTCACGAGATGTACCTGCCTTTGGACCGCCTATTCCCGAGGATGCAACTTTCCCAAAATCCACCGTCTTTCGAGATTTCCTGCTAGCCAAGGTCATCAACGCCGAAAATGCAGCCCACAAGTCAGACAAGTTCCGCGCCATGGCCACTCGGACGCGACAGGAGTACTTGAGGGACTTGGCTGAACGGCACGTAACAAGCACACCTATCGATCCTTCGGGCAAATTTCCTTTTATCTCTTTGGCCCACAAGCGTAAAGAGAAGACCAGGCCATATTCTGGGGCAGAGCTGCGTAGCCCAGGGTCCATCAGCTGGCCTGTTTACGCTGAGGACCATGGAGCCGGAGGAGAACTGGAGGCCCTGCTGGCCATTTCAAATGACTTTCTAGTGCTGGTGGATCCAGAAGCCAAGGCTGTTGTCTTCAACTGCGCTGTCCGAGATGTCATTGGTTGGACGCTGGGGAGCCCTGCTTCCATGAAGATCTACTATGAACGTGGAGAAAACATTTCCCTGCGCTCCATTAATAACAACACCGAAGACTTCCGTGAGGTCATCAAACGTTTAGAGCACCTCACTAAAGGCTGTGAGACCTCTGAGATGACCTTGCGAAGGAATGGCCTAGGCCAGCTTGGTTTTCACGTTAACTACGAAGGCATCGTGGCAGAGGTGGAGCCATACGGCTATGCCTGGCAAGCGGGGCTGAGACAAGGCAGCCGGCTGGTAGAAATTTGCAAGGTGGCTGTGGCAACACTTTCACACGAGCAAATGATAGACCTGCTCCGCACCTCCGTAACTGTGAAAGTTGTCATCATCCCACCCCACGAGGACGCCACACCTCGCAGGGGCTGTTCAGAACTGCACCGCATGCCAGTCGTTGAATACAAGGGCAGCAATGAGAGCGGCTCATTTGAGTACAAGTTTCCTTTCCGGAGCAATAACAACAAATGGCAGCGCACCTCGTCCAGCCCACAGCAGTCCCTCACTGCCTCCCCTCAGAGTCACAGTGGAACCCCGAACCGTGCCGTCAGCCTGGGGGCCAGCATGGGCAAGACCCTCTCTGCCGAGCGGCCTGAAAGAGCTGCGGCCATCCCCCGCAGCGTGTCcagtgatggccgacctctggACTCTAAAAGGATGTCTCCAGGTTCTGAGAACTATGCCCTGACCTCCTCTCTCATGTTGGGCCGATCGCCGCACAACCGCAGTTCTCCCAGTAACCTCTCCTGCTCCAGTGACACGGGCTCAGGCAGCTCCGCTCACTGGAGGCAGAAGTCCATGCCGGAGGGATTTGCGCACAACAGGCACTCTCCTCTCCCAGCGGAGCGGCAAATGGGGGCAGAGGATGGAAGCAGCGGCAAGTCGACACCCAGCTGGCCCAGAGTGGAGGACAGCTCTGACAGACCACCATCAGATGCTCCAGTCACTAAGTCTAGCTCGTCCTACTCAGGCGGCCCACGCATCCAGAGACAGGAACAGGTCATTCACCTTTCACCCAAGAAGGGCAGCCAGTCTGAAGGTCCGTACTCCCACTCCAGCAGTAATACGCTCTCCAGCACCGCGTCTAGTGGCGGTCACAGCGATGACAAGTGGTATGATTTGGGCAGTGGAGGGATGGGCGAGCAACCGGACTCTGAGCCGAACGGTCTGGGCGGTGGTGGGTACCTGCAGGGAGCTTCAGCCGACAGCGGCATCGATGCTACGTCATACGGCCCCACCCACGGCAGTTCCAGCTCTCTGCTGGCTGTGGGAACTGCTGGTGCCAGAGAAAGAGCCCCTTCACCTTGGCACAGCCCCACAGAAGGGGGCCGGAGGGTGCTTGAGAGGTCCCCTCCCGCAGCTGAGTCTCCAGTGTCCCCTGCAGATGGGCCGCCTACTACGCGAAGCCCACCAACCCATCTACTGGTCCGGGATAACAGCTCCTACAGTCTGAGTGACATGGCCTCTTATTCAAGaagacCGCAGGGTGAGGGAGCAGACCCCGGGTCTTCTCAGTCCAGGCCCTCTCTTAGGGATCTGCACTCTCCTCAAGCCATGTGCAAGTCTACTGTGGATGAAGACCTGAAGAAACTTGTCACGCCAGAAAGTACCCCATCCAAGCAGCACAAGGACAAGTCCTCCTCGGGTCCAGCGAGCTCAGGGCGGCGTTCTCTGCACCGCACCCTGTCAGATGAGAGCATATACAGAGGTCAGCGGCTGCCATCTCTGGGAGATTCAGTTCTGGAGCAGGCTCTGGCCAGCGACGTGCTCTTCAGCTGCTCTACCCTTCCACGATCTCCCACCACCCGTGGCGCTCCACTGCGCAGACCTTCCTACAAAATGGGCATCAAGATGCATGGTGACCTCTCAGCGTCTGACACCTCTCTAGCAGACCTTCACGAGCGACAGAGGCCACCTCCTCCTGAACTGGGTCTCATGCCCCTCccagacacggacacagacagCGGCCTGGACTGGACCCACCTGGTAGATGTTGCCAACGCTTTCGAGGGTGAGAGAAGACCACAGCGCATGCAAAGAGGGTTTATGTTTAGTTCCCAAGACATTAGTCAGAGAGGAGAGACTTCGCTCAGTCCTCAGCATCTTGAGCTGCAGCCAGTGCCACACACCAGACTCTCCCCCAGTGAGGGGCCTTCAAGCTACAGTGGGAAGGTTTCTCAGCTGGAAGCTTTGGTGAAGATGTTGCAGGAGGACTTGAAGAAAGAAAGGGAAGAGAAATTGAAACTGCAGGCACAAGTTAAGAGGCTTTGGGAAGACAATCAGAGGCTGCAAGAAGAGTCTCAGAGCTCCGCTGCCAAGCTCAAGAAATTCACGGAGTGGGTCTTTAACACCATCGATCTGAACTGAGCCATCTGCAGAAGACAGGCAAGATCAATAGACTTCTTGTGGACCAGACAGACGTGGGAGAGACTACTCCCATGTGAGACCGGATTGAGAATTGTCCATTCACAATTCAACATAATTTGATGTTCACATTAGCATTCCTCCACAGACTCTGGCGATAATGACCAACACTGACATGGGGAGGGCAAAAATACAAATCTCCAACCCTTTCCTGTGATGACTTCTCTTCTCTAGATCCCCCCCCCCCGGGACATCATTAGAAGTGCCCACAGGAGTAACTAGTAACTGGCTCTGATGCCAGCCTATGCCTTCCAGGCTCTTGTCCCTCCTGTGCCCTACTTACGACTGACAACCTGACATTTGGTTCCAGTCATTTGGACAGTGCTACAGTCCTGCCCCATGAAGACCCCCTGCCTCAGAGCCAGAGTCGAAGACTCCTCTGCTACACGACCATATTTTAGCATCCAGTCGTAAAAATCTCTGCATGTTCTGGCGAAACCAATCTACGAACATCATGTGCCACCATTTGTTTCAAAAGAAggaacaccatttttttttttttttttgaggcgGCATGAAGTGATTTTCTCATAATGAAGTCAAAACTTGTGTTGTGTTGTGAGGTTTTATCTCAACATCAATTGAAGCAATAGCAGGGAGTCTAAACCCTTGTCCTAAAGCCCTGATTTGCGCATACATAACGACTTTGGCAATATCCTGCCTCGAAGTACATCTCAAGTCTGTGGTACGAACACTAATGATCCTACAAGTCTGGAATTTAAGGACAAGTCTTATTTTGGGAACAGTTCagttatttattctgtttatgtTTCGAGTAATCAATGATTGATTCTCTATGCGTGCAGTACAATGGACATCTGTGAATAGTGTTTATTTCAGAAGGGGATGTCACTTCATTTGGACtccgtttttatttttggtatttttatttctagtaGAGTTCTGCCTGagctgcagtattttttttttgttgtgagtTGTGGTGCCCTAGTCTGCTATTGTGTTGCTTTAGTGCCATCTAGTGGTAATAAGTGATCGTCTCACTTGACTTCAGCTCTAATCTATTCCAGTTTGTTTCCACGTTGCCTATACACAACCATAGTGATGGAAACCTTCCATTCAAACAAGAGATAATGCTATAAAAAGCAGACACACGGGTATTGGATTCAATATCAGGGACGAGAGGAGGTGCCTTTCtgagaaaagggaaaaaaaggaaacgaGGAGAAACATAACAGGAGTCATGAGTTCTCATGAAAAATGCAGTGGGCTGCTCACAGGAACCAGCCTCAGAAAGAATGCACTCAAACCGAGAGCTGTGGCCATCATCGCGTAACGAACGCGGAACCAGAGGGACGGTTTAGTTAAGAGCCTGGTTCACTGTCTGGGATCAATAATATTGAACAACTGCCCTGTAATCTCACACCCGGTTATAGCACTTTGCTCTTGTTGTCAGTTCCTCAGTCCCTCGTTTGAACTTAGTGGCATTCCCAGAGCAAAAAGGTCAGTCATCAAAGACCAAACATCTTGCCCTACTTTTATCACCAACCCAAGTAATGTATATTGTATAGCTCTCTCCGATTTCTGCTTTGAAGGGCCTGTTTATATTGTGCAGGAAACACTAGCTGGTTTCTCAGAGTCAATTTCTGGATACTTTAAGCATCGTGAAGAAGACGTGCACAATGGATCCGGAGGTTACTTTGATTTGAGTTTGCGAACAGTGAGCAGCCATAATCGATTCTGTTCTAGGAATCACTCGAAGTGTCTCGGAAAGTGCCTCCCGATGCCAGCAGAGAACGACACACTAAGAATGCCAAACATTTTGCCTCTGTCCCCGTAAACAGGGATGACCTGCACAACGTGGAGAAGGATGTGAGATTATTAGTTTCATTTCCAGGTTTTGCTGCCTCGGTCAGGAGGGTGAAACAAGAGCATCAAACCCCCCGACTGCTATTTATTCTCGCGTCTCTCCCCTCTGGTTTGGTATTCATTTTTCAACATTCTCAATcctttataatttttaaacacataaatggTTTTGCTCAAGGTAAATATTGATGACTGTGGgaatgtgaattattattataattttttttcgaTTCATTCTTTCTCTTATCTCTTCTATTTTTGTTATTAGCTTCCTGAGTTGAGTTtctttgcactgtttttgttttgttttgtaggaATCTATCGCTATTGGTTTATGGACATGCATAAACATATGGCTTTTGATGTTGTTTCTTGTTCTTACGTATACGGTCACTTTTGAGAGAGACGAGGCTGGGATGGTGTTCCCTTCCTCGATCTCTTTTATATCGTGTCATTAGACGTTACTCCATATATTCTCCCATCTAAACTTTAaagaattgtgtttttaatgatgtgcacattttaaaaaggagcATTACgattacaaacaaaaagtactGTTTACATATACTGTTCATCTTCTTTGTAAAGTGTAGAGGTTTAAAAAGAGACTTTCCAGTGATTACAGTATTAAggtttcataaataaataataataaaaaacttgaTTTGAGGTGCTGTAATTATTCATGAACTGGTCAAAACAAATGGCTCGTGCTTGCCGCCTGCTCTCTGAGGTGTAATCTGCCATTGCTTTCTGAgccaataaattaatttaaatgccaTAGTTGAATGTTA

Function

GO:

id name namespace
GO:0051056 regulation of small GTPase mediated signal transduction biological_process
GO:0005096 GTPase activator activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247215.1 lncRNA downstream 64163 14839057 ~ 14843736 (-) True LOC122324712
TU204663 lncRNA downstream 114190 14793495 ~ 14793709 (-) True G138627
TU204596 lncRNA downstream 328998 14578701 ~ 14578901 (-) True G138579
TU204567 lncRNA downstream 382876 14524732 ~ 14525023 (-) True G138562
TU204529 lncRNA downstream 479647 14426959 ~ 14428252 (-) True G138537
TU204880 lncRNA upstream 25853 14997143 ~ 15003189 (-) False max
TU204882 lncRNA upstream 25853 14997143 ~ 15003189 (-) True max
TU204946 lncRNA upstream 352282 15323572 ~ 15324280 (-) True G138812
TU204944 lncRNA upstream 360511 15331801 ~ 15347281 (-) True G138811
TU204970 lncRNA upstream 399318 15370608 ~ 15380969 (-) True G138828
XM_043219332.1 mRNA downstream 4404 14846009 ~ 14903495 (-) False rgs6
XM_043219330.1 mRNA downstream 4404 14846009 ~ 14903495 (-) True rgs6
XM_043219331.1 mRNA downstream 4706 14846009 ~ 14903193 (-) False rgs6
XM_043220443.1 mRNA downstream 94397 14808533 ~ 14813502 (-) True wdr21
XM_043220445.1 mRNA downstream 96091 14808533 ~ 14811808 (-) False wdr21
XM_043220400.1 mRNA upstream 4972 14976262 ~ 14984856 (-) True rab15
XM_043218913.1 mRNA upstream 25835 14997125 ~ 15003202 (-) False max
XM_043218912.1 mRNA upstream 25835 14997125 ~ 15003202 (-) False max
XM_043218916.1 mRNA upstream 25835 14997125 ~ 15003200 (-) False max
XM_043218914.1 mRNA upstream 25835 14997125 ~ 15003200 (-) False max
TU204531 other downstream 462055 14443592 ~ 14445844 (-) False LOC122324589
TU204189 other downstream 1215892 13664506 ~ 13692007 (-) True G138285
XR_006247291.1 other downstream 1471548 13425475 ~ 13436351 (-) False cracd
TU203701 other downstream 2660889 12246222 ~ 12247010 (-) False mdn1
TU203715 other downstream 2683629 12222810 ~ 12224270 (-) True G137949
TU204892 other upstream 21809 14993099 ~ 15015183 (-) True srsf5b
TU204893 other upstream 21809 14993099 ~ 15015183 (-) False srsf5b
XR_006247368.1 other upstream 318985 15290275 ~ 15290410 (-) True LOC122325630
XR_006247360.1 other upstream 750756 15722046 ~ 15722265 (-) True LOC122325621
XR_006247362.1 other upstream 751260 15722550 ~ 15722769 (-) True LOC122325623

Expression Profile