RNA id: XM_043219448.1


Basic Information

Item Value
RNA id XM_043219448.1
length 1115
RNA type mRNA
GC content 0.42
exon number 6
gene id rpl7l1
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 18781603 ~ 18784598 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTATAGTGAATCGTAATACACACTCCAAAGCGCAAGGCGACAGTATTACAAAAATAGACGCGGAGGCACAACGTCATCTCCGTGCGACGGAAATAGTCACAGCAGACGAGATGGCAGAATCAGGAACGGAGAAAGTAATCAAGCTTGTTCCTGAGAATCTTCTTAAGAAACGCAAGGCCTATCAGGCCATCAAAGCTACTCAAGCCAAACTTGCTTTACAGCAGAAGAGAAAAGTCCATAAAGGGATACCCTTGAAGTTTAAGCGCTTGGAGGACTTTTTGAAAAACAGCAAGAGGAGGAATCGAGATGAGACCCGACTTGCCAGACTCAAACACAGACCTCCTCCGCCCCTGCCCCCTGCAAAGAACAACCTGGTGTTTGCTGTTCGCATCAGAGAGATCAAAGGTGTGAGCCTCAAAGTAATGAAGTCCATTCAGATGTTAAGGCTGAGGAAGATCTTTAGCGGCACCTTTGTGAAAGTCAGCAAGACTTCTATTAAAATGCTTCAGACAGTGGAACCGTACGTTGCGTGGGGATATCCCAACTTGAAATCAGTCCGTGAGCTTATATTGAAAAGAGGTCTGGTAAAGATTGGCAAGAAAAGGATTCCTCTGACCGACAATACACTCATCGAGCAGCATCTTGGACAATATGGCATAATCTGTTTGGAGGACCTTATTCACGAGATCTATTCTGCTGGGAAGAACTTCAAGGTGGTAAACAATTTACTGTATCCGTTCCGTTTGTCAGTACCAAGACACGCTGCTAAAGACAAAGTTGGACTGCTGAAAGATGTTGGTGTTCCTGGACCCAGAGCAGAAGACATAAACTCAGTCATCAGGAAACTCAACTGAGCTAATAGACTTTCATGGACTGCTGTTGTCACCTTCCTTCAGATTACCCCAGCAAAAATTATaaaggaaaaaattataaaccatTACAATGGAATGTTCAGTTTAATTGGACATTCCCTGATAATTTTGTTCTCGACCATGGCATAGATGACATAACATTTGGGGAAACATGCATGGCAGTGTTTCTGTgtaaaacaaatctttatttccttgtctgtaaagtttttttccttgacatttttaataaactgcaaaatttca

Function

GO:

id name namespace
GO:0005840 ribosome cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206519 lncRNA downstream 110670 18669438 ~ 18670933 (-) True G139801
TU206504 lncRNA downstream 146937 18627307 ~ 18634666 (-) True G139798
TU206496 lncRNA downstream 182691 18598694 ~ 18598912 (-) True G139790
TU206392 lncRNA downstream 329471 18449962 ~ 18452132 (-) False LOC122324299
XR_006247141.1 lncRNA downstream 329487 18449945 ~ 18452116 (-) True LOC122324299
TU206550 lncRNA upstream 40282 18824880 ~ 18829799 (-) True G139823
TU206615 lncRNA upstream 256192 19040790 ~ 19043914 (-) True G139871
TU206658 lncRNA upstream 375240 19159838 ~ 19160157 (-) True G139903
TU206702 lncRNA upstream 439782 19224380 ~ 19250790 (-) True G139940
TU206741 lncRNA upstream 513671 19298269 ~ 19300293 (-) False angel2
XM_043219446.1 mRNA downstream 1896 18766159 ~ 18779707 (-) True slc5a6a
XM_043219342.1 mRNA downstream 48097 18680893 ~ 18733506 (-) True enah
XM_043220539.1 mRNA downstream 101900 18670952 ~ 18679703 (-) True lbr
XM_043220151.1 mRNA downstream 112524 18661509 ~ 18669079 (-) True si:dkey-1j5.4
XM_043220348.1 mRNA downstream 174060 18604651 ~ 18607543 (-) True LOC122325333
XM_043219450.1 mRNA upstream 45826 18830424 ~ 18831573 (-) True ptrhd1
XM_043219728.1 mRNA upstream 48797 18833395 ~ 18840324 (-) False slc25a27
XM_043219729.1 mRNA upstream 48797 18833395 ~ 18835673 (-) True slc25a27
XM_043219883.1 mRNA upstream 61797 18846395 ~ 18864036 (-) False txlnba
XM_043219881.1 mRNA upstream 61797 18846395 ~ 18864036 (-) True txlnba
TU206351 other downstream 334654 18406027 ~ 18446949 (-) False G139706
TU206365 other downstream 339311 18406754 ~ 18442292 (-) True G139706
XR_006247304.1 other downstream 431481 18343472 ~ 18350122 (-) True adgrf3b
XR_006247229.1 other downstream 957402 17810274 ~ 17824201 (-) False swt1
TU205714 other downstream 1353532 17346806 ~ 17428071 (-) True erh
unassigned_transcript_2507 other upstream 291448 19076046 ~ 19076118 (-) True trnaf-gaa_119
TU206720 other upstream 470212 19254810 ~ 19256255 (-) False batf3
TU206721 other upstream 476868 19261466 ~ 19262878 (-) True LOC122324949
TU206746 other upstream 515778 19300376 ~ 19302848 (-) False angel2
TU206747 other upstream 515778 19300376 ~ 19303968 (-) False angel2

Expression Profile