RNA id: XM_043219450.1


Basic Information

Item Value
RNA id XM_043219450.1
length 957
RNA type mRNA
GC content 0.39
exon number 2
gene id ptrhd1
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 18830424 ~ 18831573 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACCTTTATTGCCTCAGAcatgtgaaaaacacaaaaatacacgtTTTATTATACCAGCAAGATATTGAAattcaaaacaacacagaacATGCTTTTCTTTCTACAGAAAAGCGTATGAGAATTAAAATTATGCCGCAAATAACGCATATTTCATAAAACCCAGTGAGATAaaggtaaaacatttattatatgcatttaaacattaatgagCGAGTCCTCAAATAACCACTAGAGGGCATCCAGTCAAAAGCTTTACCAATAAGGAAATATACCCGGAACGTAAACATGAGCCCGCTGATGTGTCATTTCCGGTCAGGCTATTTTCACATTCAATAAAATGGCATCGCCGAGCAGTGGCACTTCCCGGCGTTTAGTCCAGTATGTGATCGTCCGATCAGATCTCATACACACTTTATCGTGGCCTTTAGGGGCGGTTATAACTCAAGCATGTCACGCGGCCACTGCTGCTATTCATTTACACTACAGTGACCCCGATACTCAGGAATATCTGGCAGAACTGGACAGCATGCACAAAGTAGTGCTGCAGgCACCGGATGAGGCATCTCTCTCCACTCTTTCCAGTACGCTACGTGAAAAAGACATTGCACATAAACTTTGGATGGAGCAGCCAGAGAACATCCCGACGTGTTTGGCGTTGAAGCCCTACCCCAAAGAGACCGTGCAGCCATTTCTAAAGAAGTTCAAGCTTTTCAAGTGAATTCTGTATGAATTGTGCAATATTTTGAAACGAACTGTATAAACACAATGAACGAACGAACCTGCTAAAACAGCCTTCACATCtcacatttgtattcatttatgttttgtcTTGATTCATCGATGTGGCAAAAGATTACTCATTAAAGTTGTTAgtaatttaagttatttaatatctaaaatgaAAACCGAATGTCCTTATTGTGATCAGTTTGGGTAATAAATTTCTTCGACAATGGAA

Function

GO:

id name namespace
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0004045 aminoacyl-tRNA hydrolase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206550 lncRNA downstream 625 18824880 ~ 18829799 (-) True G139823
TU206519 lncRNA downstream 159491 18669438 ~ 18670933 (-) True G139801
TU206504 lncRNA downstream 195758 18627307 ~ 18634666 (-) True G139798
TU206496 lncRNA downstream 231512 18598694 ~ 18598912 (-) True G139790
TU206392 lncRNA downstream 378292 18449962 ~ 18452132 (-) False LOC122324299
TU206615 lncRNA upstream 209217 19040790 ~ 19043914 (-) True G139871
TU206658 lncRNA upstream 328265 19159838 ~ 19160157 (-) True G139903
TU206702 lncRNA upstream 392807 19224380 ~ 19250790 (-) True G139940
TU206741 lncRNA upstream 466696 19298269 ~ 19300293 (-) False angel2
TU206999 lncRNA upstream 503506 19335079 ~ 19341060 (-) True G140152
XM_043219448.1 mRNA downstream 45826 18781603 ~ 18784598 (-) True rpl7l1
XM_043219446.1 mRNA downstream 50717 18766159 ~ 18779707 (-) True slc5a6a
XM_043219342.1 mRNA downstream 96918 18680893 ~ 18733506 (-) True enah
XM_043220539.1 mRNA downstream 150721 18670952 ~ 18679703 (-) True lbr
XM_043220151.1 mRNA downstream 161345 18661509 ~ 18669079 (-) True si:dkey-1j5.4
XM_043219728.1 mRNA upstream 1822 18833395 ~ 18840324 (-) False slc25a27
XM_043219729.1 mRNA upstream 1822 18833395 ~ 18835673 (-) True slc25a27
XM_043219883.1 mRNA upstream 14822 18846395 ~ 18864036 (-) False txlnba
XM_043219881.1 mRNA upstream 14822 18846395 ~ 18864036 (-) True txlnba
XM_043219882.1 mRNA upstream 14822 18846395 ~ 18864036 (-) False txlnba
TU206351 other downstream 383475 18406027 ~ 18446949 (-) False G139706
TU206365 other downstream 388132 18406754 ~ 18442292 (-) True G139706
XR_006247304.1 other downstream 480302 18343472 ~ 18350122 (-) True adgrf3b
XR_006247229.1 other downstream 1006223 17810274 ~ 17824201 (-) False swt1
TU205714 other downstream 1402353 17346806 ~ 17428071 (-) True erh
unassigned_transcript_2507 other upstream 244473 19076046 ~ 19076118 (-) True trnaf-gaa_119
TU206720 other upstream 423237 19254810 ~ 19256255 (-) False batf3
TU206721 other upstream 429893 19261466 ~ 19262878 (-) True LOC122324949
TU206746 other upstream 468803 19300376 ~ 19302848 (-) False angel2
TU206747 other upstream 468803 19300376 ~ 19303968 (-) False angel2

Expression Profile