RNA id: XM_043219452.1


Basic Information

Item Value
RNA id XM_043219452.1
length 3339
RNA type mRNA
GC content 0.49
exon number 8
gene id themis
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 287735 ~ 295803 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAACAGCCAAAGAACCTTTCTGTGAAGCAAGGTTCTTCCGACTGATACAAAAAGAggtggttctttgtggaaccaaaaacgGCTGTGAGGAACCTTTTCAGCTCCTTTAAAGGTTCTAAGAGCGTGAGTCGTTTCAGTGATTTGGATCCCTGTTGTTTTGACTTGCATTAGGCCCTGATGTCATGAAGTCAGGCAGAGGATGTGGGATTTGTGTATGTCATAGTATTTTTGCAGATACCCGGTGCAGCTCTGCTTGACAATGCGTTGAGTTGTGGTCTTTGAGCTGTACTTGGCTTCCTGTCCTCCTCCGCTGAGCAGGATGCCTCACATTGTCGTTGTCGGTCTGCGCTGCTGAGCTCGAGGGGCCTCTGGAGGGGCCAAAGGGCATCCTGGGACTTCCTCTGCCACCCGGCCCTCCATTAACCCTCTTACTGGACCTTTTATGGCTTCGTGAGGGACAGAGCCTCGTCTCTCAGCCCTTCCAGAGCTTTAAAAGCGTACAGGCGCAGCAGAAGATGGCTACGACGCTGCATGAATTCACGCAGTTTACGGATCCTAAGATGTTCCCCAGAGTTCTTCAGATCCAGTCGGGAATATATTGTCAAGGTAAGAGTAAAACTGGGGCCGTTCATTCATCTGCTCTTCGTGGGAAAATAATAGCTgtTGCATTATCTGAGATGTTTGGAAGAGAGTGCTCTCTTTCGACAGGAGATTTGCTGAAAATCATTGATATCACCATCACCAGGTTCACTGCTCGGACCTCCAGCAAAACTGAGATCGAGATTCCTGTGGAATATCCAGGATTGTTCAAGCTAGTGGCCGACAGTCAGCCGTATCGCAGCATACAAGAGATAGCAGACTCGGTGAAGATCAGCCCCCACAGACTGTCCCAGGCGGTGTTCCTCAGCGGTTCGGAGGTTCAGCTGGAGCAAGGCGTCATACGGGAAGGGGACAGCTTCAGAGTGACGTCCGTCTCCCGTGAGCCCGGCGGTGGACGAGTGCTGTGTGAGCTGCTGCACAGAGAGCCCAAGACCTGCTTCAGCCTGAGCTTCTCCCAGCAAGGACACTTCACAGAGAGCCAGGACGACCAGTTTTACACCCTGAGAGAGATAGCCGAGTGGAAGATCTCCAAAGGCAGGACGAGGACTGTAACCGAGGTCAGAAAACTGCCCAAGAAGGACTTATTATTCTCACATTTGCTGGAGAATGTATTTGGAGAGCTGAAGCTGACTCCTGTGTATGAACTGAAGGCTGTTACGAGAATCAGTGAGAAGATTCTGCTCATCCCGTCAAATCTGGACGTGGAGGTGGTGGACGTCACCGAGCAGTTTGATTGTGACTCCTTTGtgcagcctctctctctcacggACGTTAAGAGTCCCCCAGAGTTTTTTCCCGTGGTGGCTAAGTTGTCGTGCGAAAGACCCTTCAAGCTTTCTTCGGAGCTGGAAACACTTTTCCAATCCAGTCAGGTGATCGTTCATCATGCTTTCTACGCCAAACGAATTCTGGCCTCGGAAATGGGTCGTGAGTCGACGAGACACTTTCTTATCCCGGAGTCCTACAACGGACGCTTCAAGCGGCGGCCGCGCCAGTTCCCCACGGCCTACGACCTGGAGCGAGCACGCAGCCAAACCGAGCAGATCCGGGTGGTGGCCACCAGAGAGTTTGAGTCCGTCTACAACGGCCTGGCCTCCGTAAATGCCGGAGACGAGTTCATAGTGACCAAAGGCAAGAGCTGCGCGTCACACAATGGAACCAAGAGTTCAGCCGATGCTTTTCAGTGTCTGAAAGTCACAGGGACGGAGGCGAAGGAGCCGGTGCGCCTCCCCATGTGTTTGGAGGGAGCATTCATGGAGCTGGTGAAAGACAAGCGGCAGTACACCGTTGCGGAAATATGCCAATGGTTCTCGCTGCCCTTCAACGTCAAAGTGTCCGTGCGAGACCTGTCTCTAAAGGTGGACGTTTTGGCTGGCTTGCCCGGTCTGCACATGGAGGAGGAGATCTCTGACCCCTGCCTCCTCATTTCAAACGCTGACCTGTCAGAGATCAGGGAGGTTCCGGTCAATCGCGCAGACCTGATCCTCAACATAAAGCATCGCTGGGATGGCCAGAGTCCAGTGTGTAGCAGGAGCTCAGTCGTAGAGGAGATCTCAGAGGACTGTTACTACACACTCAGGAGGTACGCCGTTACTACCATCACACCCCCTCCACGGCCTCCCAAAAAACCCAAAGAGCCTCCCCCTCGACCCCCCAAGATGCTGTCGTCCAGATCTGAGAGCGCCAACAGCGAAAGCTCCAGCTGCTCTCCACAGAGTCTTTGTGGCGAACCGTTTAAGCAAGACGACTTCATTCAATGCAGTGATtcaaaaaatggaagacaAAAGATCGTCGTTAGTCCCGTCGCTTTGCCAAGACCCCTGAAGAAAGATCTCGCCAAGGGCCGAAGTCTGGACAACGTATCCATCACACAAAATGAAGATGATGACAACGATGTGCACGATTATGAATATATCGATGAAGATCAGATCGACAGCATAAGGAGGACATACAATGAACAAAACGTTAAGACGGACAAAGGAAAACCGAGCAACACGATATAAGAGTCACTAAACCCACTTACTTTCACTTCACATGATGAGACCGACGTCACGCAACTTTACATGAATGCAGCTCATTTATTAGGGGAAGGTCTTCTGTGCTTATTAGTCCTGTAGGAGTACAGACACCAGGTACGCATCTGTTTTTTGTCTTCGCATGAACCGGGTGAAGTACACCAGTTCAGAATCATCTTTGGTCAGTCGATGGTTGATGGTCTGCATGTTATATATTCATTCAAACGCTTTGTTTTTTCTAAGGTCCATTAGATATTATGGTGCTTATATGAACTGGTATACTATCCGTTATGAAACCGTAAGTACAGTAAGCGAgttttatacatgtattttagtCCCTGAGGTTTCGGTCCTCGTATCTCTCCAGGCTGCAGCTCTTTTCGGTGACCATGGCTTGTGGATCATGTACTgtccaaaaaaatgaacaaaaagctATCACTTTTATACCCTATTTATTTAATGGTTCTTGTTAGTAttacaatactaatattatttCCTAAAATATTAGCACCTTTGAAAAGGGCAGTGCCATAGTGACCACTATTTTTAAGTAATGATGTCAGAGAAACCAACCTTCGTTAACTTAAGTATATATTAATTGAGTTTTTTGTACAGTCTGGTTATACGTAGAGTTGAAAGTGGGTTTATGTTTTACATAATTGTGTGAAGAAggacattttctgcattttgtcTGGTCTACTTTGAATAAATGAGATGGAAAGTA

Function

GO:

id name namespace
GO:0043368 positive T cell selection biological_process
GO:0043383 negative T cell selection biological_process
GO:0050852 T cell receptor signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199499 lncRNA downstream 1176 282902 ~ 286559 (-) True G135010
TU199539 lncRNA upstream 237812 533615 ~ 604306 (-) True G135035
TU199540 lncRNA upstream 309431 605234 ~ 606164 (-) True G135036
TU199573 lncRNA upstream 314939 610742 ~ 611218 (-) True G135067
TU199578 lncRNA upstream 348081 643884 ~ 647196 (-) False tmem244
TU199721 lncRNA upstream 404736 700539 ~ 709031 (-) True G135185
XM_043218949.1 mRNA upstream 135 295938 ~ 428897 (-) False ptprk
XM_043218931.1 mRNA upstream 135 295938 ~ 428891 (-) False ptprk
XM_043218935.1 mRNA upstream 135 295938 ~ 428890 (-) False ptprk
XM_043218933.1 mRNA upstream 135 295938 ~ 428890 (-) False ptprk
XM_043218941.1 mRNA upstream 135 295938 ~ 428890 (-) False ptprk
XR_006247189.1 other upstream 457764 753567 ~ 822458 (-) False epb41l2
TU199809 other upstream 642362 938165 ~ 940175 (-) True G135237
TU199808 other upstream 643370 939173 ~ 940175 (-) False G135237
TU199811 other upstream 643370 939173 ~ 965395 (-) False G135237
TU199861 other upstream 806902 1102705 ~ 1103113 (-) True G135276

Expression Profile