RNA id: XM_043219539.1


Basic Information

Item Value
RNA id XM_043219539.1
length 803
RNA type mRNA
GC content 0.45
exon number 7
gene id adat2
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 19179809 ~ 19232817 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AACACGTGTGCGTCACTAAAATGTTACTTTCCTGATTTGcgctgctttatttttttacggtTATACGTTAGATTTGACGAGGATACCGATGGAGATGCGAGGAGACAGTGTCGAACCtgaaaaaagtgattttctgCAGCCGGTAGATAGTGAGATACAAACATGGATGTCAAAGGCCTTTGGCATGgcACTTGATGCCCTTGAGAATGGAGAGGTTCCAGTTGGCTGTCTGATGGTTTTTAACAACGAGATCATTGGAAAGGGAAGGAATGAGgtgaatgaaacaaaaaatGCTACTCGGCATGCAGAAATGGTGGCACTGGATCAAGTGCTTGATTGGTGCCATTTCAGAGAGAAGGACCCAAAGGAGGTGTGTGAACAGACTGTACTTTATGTGACAGTGGAGCCATGTATCATGTGTGCTGCTGCTCTGCGACTGCTTCACATACCTCTTGTTGTATATGGGTGCAAAAATGAGCGGTTTGGAGGCTGTGGATCTGTCCTGGACGTCTCATCAGATCATTTGCCACACACTGGAACTTCATTTAAGTGCATCGCTGGCTATAGAGCAGAAGAGGCCGTCGACATGCTcaagacattttataaacagGAAAACCCAAATGCTCCCAAACCTAAAGTGAGGAAAGATTTGATCAGTCCACCAGATGTCGCTGTAGTCATTCAGAGGATGGAAAAATAAGAGAGGAGTATCGCTACTCTGAGGATCTGTGATGGGATGAGCGCCATTTTCCTTCCCCCGTCGTATTTCCGTCTCAGGAAATATCCTGTTGACAGAGGGATGC

Function

GO:

id name namespace
GO:0008033 tRNA processing biological_process
GO:0016787 hydrolase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206658 lncRNA downstream 19652 19159838 ~ 19160157 (-) True G139903
TU206615 lncRNA downstream 135895 19040790 ~ 19043914 (-) True G139871
TU206550 lncRNA downstream 350010 18824880 ~ 18829799 (-) True G139823
TU206519 lncRNA downstream 508876 18669438 ~ 18670933 (-) True G139801
TU206504 lncRNA downstream 545143 18627307 ~ 18634666 (-) True G139798
TU206741 lncRNA upstream 65452 19298269 ~ 19300293 (-) False angel2
TU206999 lncRNA upstream 102262 19335079 ~ 19341060 (-) True G140152
TU207027 lncRNA upstream 213011 19445828 ~ 19448712 (-) True G140175
TU207123 lncRNA upstream 504123 19736940 ~ 19737992 (-) False G140240
TU207125 lncRNA upstream 504123 19736940 ~ 19737817 (-) True G140240
XM_043220378.1 mRNA downstream 13801 19096279 ~ 19166008 (-) True hivep2a
XM_043220376.1 mRNA downstream 17022 19096279 ~ 19162787 (-) False hivep2a
XM_043220377.1 mRNA downstream 42325 19096279 ~ 19137484 (-) False hivep2a
XM_043220380.1 mRNA downstream 42328 19096279 ~ 19137481 (-) False hivep2a
XM_043220434.1 mRNA downstream 92624 19082545 ~ 19087185 (-) True si:ch211-202p1.5
XM_043218875.1 mRNA upstream 21917 19254734 ~ 19256272 (-) True batf3
XM_043219738.1 mRNA upstream 23871 19256688 ~ 19258698 (-) True nsl1
XM_043219739.1 mRNA upstream 29507 19262324 ~ 19262952 (-) False LOC122324949
XM_043219807.1 mRNA upstream 65417 19298234 ~ 19303812 (-) True angel2
XM_043219776.1 mRNA upstream 222987 19455804 ~ 19487350 (-) True itpkb
unassigned_transcript_2507 other downstream 103691 19076046 ~ 19076118 (-) True trnaf-gaa_119
TU206351 other downstream 732860 18406027 ~ 18446949 (-) False G139706
TU206365 other downstream 737517 18406754 ~ 18442292 (-) True G139706
XR_006247304.1 other downstream 829687 18343472 ~ 18350122 (-) True adgrf3b
XR_006247229.1 other downstream 1355608 17810274 ~ 17824201 (-) False swt1
TU206720 other upstream 21993 19254810 ~ 19256255 (-) False batf3
TU206721 other upstream 28649 19261466 ~ 19262878 (-) True LOC122324949
TU206746 other upstream 67559 19300376 ~ 19302848 (-) False angel2
TU206747 other upstream 67559 19300376 ~ 19303968 (-) False angel2
XR_006247245.1 other upstream 368715 19601532 ~ 19615202 (-) False trim54

Expression Profile