RNA id: XM_043219541.1


Basic Information

Item Value
RNA id XM_043219541.1
length 2046
RNA type mRNA
GC content 0.49
exon number 2
gene id nkx2.4b
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 21079804 ~ 21082714 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaaaaaaaaaaaagctgacgCCACTTGGAAGCTCAAAATGATACAAATTTGCGAGCGGAGCCGTTCTGATGGCATTCTTTGCGTATCTTTTGCTCCGTGAGTATTTTCTTCAATTACCAGGATGTCAATGGCTCGTTTTGCTCGTCGCTCCGCCCCCCCGTGTTTGTCGTAAACCCGCAGTCTGACGGGAATAAGGCAGAAATAAGAGCGTCTAGGACTCGCCTCTTTCACCAGGACGCGCACTCGGACCACGGAGAACGCGGTTACGCACGGCGGACACTTGGCGTCTGGCGGCAGCGCGCGCATCCACGGGCTTGTGGCGGCTTCGGCAAACTCGCTCGCGGGCTGAACCATGTCCTTGAGCCCCAAACACTCAACGCCTTTCTCAGTGAGCGACATTTTGAGCCCGATCGAGGAGACCTTCAAGAAGTTTGCGGCCATGGAGAGCAGCGCGAGCCTGGCGTCTCCTCTGTACAGACAGACGCAGGTGTCTCAGGCGAACCTGCAGCAGCACAGCATGAGCCACAACACCTACCACATGCCGCACTCGCAGTTCTCTCACGGCGCCATGGGAGGATACTGCAACGGGACTATCGGCGCCATGGGAGACCTGCCGTCCTATCAGGAGAGCATGAGGAACGGCGCCACGGCCACGGCTTGGTACGGCTCGAACCCCGAGCCCAGATACCCCACAATCTCCAGGTTTATGGGTCCCTCTGCGGGCATGAACATGGGAACGTTACCGGGCATGGATGCAAGTAAATCTATGGTGACTTTACACGCGGCGCCGCGGAGGAAACGGCGCGTGCTCTTCTCCCAGGCGCAGGTGTACGAGCTGGAGCGCCGCTTCAAGCAGCAGAAGTACCTGTCTGCGCCGGAGAGGGAACATTTGGCCAGCATGATTCACCTGACCCCGACCCAGGTCAAGATCTGGTTCCAGAATCACCGGTATAAAATGAAACGCCAAGCGAAGGATAAAGCGTCGCAGCACCAGCAGCAGGACAGCGGGAACCTGTGCGCTCAGCAGTCGCCTCGGCGCGTCGCGGTGCCCGTGCTGGTTAAAGACGGTAAACCGTGTCAGAACGGCTCGAGCACGCCGACGTCGATCCACCAGCAGGTGCAGAGCGTGCTGGGAAGCGAGACTTTAGCTTCGGCCGAGGATCTGGAGGAAATGTCGCCCAGTCCTCCCCTGATGAACAGCCTCTCTCAGACTGACGCCGCGCTCATCGAGTACACCAGCGGCATGGTGAGCTCCAACCTGCTGTACGGCAGAACTTGGTGATATTTCCGCGAGCATTTTCACCAACACAGACGATGACAACCGCAATTGAATTTCCtcaaagacctttttttttaaaacttttttttttttaaaacgaaaaAACGAAACGGCGTTCGTCCGATGCAGCGGTCCGCGGACCCTCGAGTGAATTGTATGGATTGTAACTTTAAATCGTTACCGAATGAAAACCTTTGGTGCAGATGATGAggagtgtgtgcgcgtgcgcgtgcgtgtgcgtgtttgATGAAGACTAGTCTAGCGTGATGCCATTAATCAGTTTTGTTGCTTTGTAAAATACGAGCTGTAgatgaagaaatgttttgtgtacATATCTAACACTGGGCAAAGAATGCTTTCTTGAAGTCTTTTGTAAGTTTAAAAGGAAACAATAAATATGAGCGCTgcgaatatataaaaaaacaaaacaaaaaaaaaacacgtgaatgcggtgttaaatatttttttgttactcaAAGTTTGATACAGCAAACTTGGCAGCCATTATGCATTATAGGCCTAATAGAAATAGGTTAATAGccaataacaaaataactagCAATTAtaattcagacaaaaaaaattaaatggtcAGACTgctaaaattttgtttttttctccaaagaTAAAAAtcaatctattttaaaatgtaatgttttacttgtttgttttttttttgcaattcattGTGAAATTTCTATCATTTGAGTGAAATTTCACTACATTTAACCTCGCAAAAACGCCAATATCTATATTTGCTATACATT

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0030878 thyroid gland development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247273.1 lncRNA downstream 29828 21045825 ~ 21049976 (-) True LOC122325251
TU207496 lncRNA downstream 83123 20996366 ~ 20996681 (-) True G140522
XR_006247242.1 lncRNA downstream 84291 20992521 ~ 20995513 (-) True LOC122324961
TU207404 lncRNA downstream 288103 20736588 ~ 20791701 (-) True G140449
TU207403 lncRNA downstream 288103 20789906 ~ 20791701 (-) False G140449
TU207582 lncRNA upstream 580 21083294 ~ 21083559 (-) True G140592
TU207583 lncRNA upstream 7270 21089984 ~ 21090943 (-) False nkx2.2b
TU207614 lncRNA upstream 117102 21199816 ~ 21203969 (-) False G140616
TU207612 lncRNA upstream 117923 21200637 ~ 21201961 (-) True G140615
TU207635 lncRNA upstream 164276 21246990 ~ 21247465 (-) True G140635
XM_043219753.1 mRNA downstream 104049 20968188 ~ 20975755 (-) True crnkl1
XM_043218874.1 mRNA downstream 114882 20945637 ~ 20964922 (-) False cd109
XM_043218873.1 mRNA downstream 114882 20945637 ~ 20964922 (-) True cd109
XM_043218861.1 mRNA downstream 322070 20745202 ~ 20757734 (-) True hmbox1b
XM_043220497.1 mRNA upstream 6690 21089404 ~ 21091008 (-) True nkx2.2b
XM_043219327.1 mRNA upstream 71671 21154385 ~ 21168059 (-) True LOC122324706
XM_043219167.1 mRNA upstream 168034 21250748 ~ 21256606 (-) True tram2
XM_043219157.1 mRNA upstream 176819 21259533 ~ 21264967 (-) False xkr5a
XM_043219158.1 mRNA upstream 176819 21259533 ~ 21264947 (-) True xkr5a
TU207486 other downstream 104054 20973404 ~ 20975750 (-) False crnkl1
TU207179 other downstream 1016827 20061602 ~ 20062977 (-) True G140277
TU207099 other downstream 1020201 20057624 ~ 20059603 (-) True G140227
TU207100 other downstream 1021305 20057624 ~ 20058499 (-) False G140227
XR_006247245.1 other downstream 1464602 19601532 ~ 19615202 (-) False trim54
TU207613 other upstream 115996 21198710 ~ 21278741 (-) True G140616
TU207887 other upstream 426915 21509629 ~ 21512353 (-) False LOC122324936
TU207950 other upstream 649832 21732546 ~ 21741004 (-) False batf
TU207987 other upstream 758399 21841113 ~ 21841468 (-) True G140883
TU207994 other upstream 763092 21845806 ~ 21846917 (-) False LOC122325102

Expression Profile