RNA id: XM_043219546.1


Basic Information

Item Value
RNA id XM_043219546.1
length 909
RNA type mRNA
GC content 0.54
exon number 11
gene id nfkbiaa
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 7368311 ~ 7370195 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TATGATGAAACGGATGAAAACAGGAAGGTGCAACACCAGGAGGAACGCGTCGACAGCGGCGTGGATTCGCTGAAGGAGGACGAGTATATGAAAATTGTGAGGAAATTGAGACTTTGCTTCTTGGAGACCGGATTGCGATTCCGAAGGGGACGCGAGTCTTGGACGCAAGAAGTCACCGAGGATGGAGACACGTATCTTCACCTTGCCATCATTCACAAGGCGGACGACTATGCCATCCAGATTATCAAACAGTGTCAGAACGACCTGTTCCTGAACAGACAGAACAAATCACAGACAGAGCAGACTGCTCTGCATCTCGCCGCCATCACGGATCAGCCACACATGGTGGACAGACTGCTCAAGGCCGGGGATCCACGGCTGGTGGACCAGAGCGGGAACACGCCTCCACCGCTTGCAAAAGAGGCCTCGCAGGCTTGCTTCTCGGTGCTGACTCAAATTCAGACCCAGCATCTACACTCCATTCTCAGCTTCCCAACTACAGCGACACATGTGTCTCCACATAGCGCTATTAACAACTACCTCTCAATGGTGGAGAGTCTGGTCCAGCTTGGGGCGGATGTAAACGCAAAGGAGCAGTGGAAGTGCCGACGTCACTCCACTCTGGCCGTGGACCTGCAGAACCTGGATCTGGTGCACGCGCTCATCACTTTGGGAGCGGATGTCAATAGTCTAACCATTACGGCGGTACACGCTGCACCACCTGACCTTCGCCGCCAGAACAGCGAGATCCAGAGGCAGCTTTACACCCGGACGGCCCAGGAGCCTCAGAGCGATGCCGGAGAGCGATCAGAGGACAGCGATGAGGACTGGATGTCCGATGAAGAATGTATCTATGACGATATCCAGTTCTGTGGGGAGATAGTCGGGCCCTCGACAAcattcctgtga

Function

GO:

id name namespace
GO:0009615 response to virus biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201950 lncRNA downstream 86507 7281372 ~ 7281804 (-) True G136716
TU201914 lncRNA downstream 116439 7152468 ~ 7251872 (-) True G136696
TU201911 lncRNA downstream 216557 7151390 ~ 7151754 (-) True G136694
XR_006247162.1 lncRNA downstream 229981 7135774 ~ 7138330 (-) False LOC122324389
TU201951 lncRNA upstream 23831 7394026 ~ 7396292 (-) True G136717
TU201970 lncRNA upstream 115698 7485893 ~ 7487411 (-) True G136724
TU201983 lncRNA upstream 174161 7544356 ~ 7598714 (-) False LOC122324530
TU202014 lncRNA upstream 210830 7581025 ~ 7652975 (-) True G136758
TU201981 lncRNA upstream 220391 7590586 ~ 7601542 (-) True LOC122324530
XM_043219604.1 mRNA downstream 27856 7335388 ~ 7340455 (-) True LOC122324874
XM_043219603.1 mRNA downstream 42634 7321656 ~ 7325677 (-) True LOC122324873
XM_043219601.1 mRNA downstream 54989 7308710 ~ 7313322 (-) True LOC122324872
XM_043220056.1 mRNA downstream 110737 7255499 ~ 7257574 (-) True LOC122325143
XM_043220588.1 mRNA downstream 142329 7222636 ~ 7225982 (-) True LOC122325548
XM_043220585.1 mRNA upstream 54641 7424836 ~ 7429282 (-) True LOC122325546
XM_043220186.1 mRNA upstream 61865 7432060 ~ 7436498 (-) True LOC122325222
XM_043219037.1 mRNA upstream 224066 7594261 ~ 7601602 (-) False LOC122324530
XM_043219038.1 mRNA upstream 237937 7608132 ~ 7620574 (-) True LOC122324531
XM_043219292.1 mRNA upstream 415407 7785602 ~ 7799589 (-) True zyg11
TU201958 other downstream 27875 7336151 ~ 7340436 (-) False LOC122324874
TU201961 other downstream 28372 7336151 ~ 7339939 (-) False LOC122324874
TU201939 other downstream 62587 7296861 ~ 7305724 (-) True G136707
TU201897 other downstream 139348 7125748 ~ 7228963 (-) True G136688
TU201662 other downstream 916812 6432830 ~ 6451499 (-) False LOC122324366
TU201941 other upstream 56474 7426669 ~ 7429268 (-) False LOC122325546
TU201966 other upstream 63037 7433232 ~ 7436354 (-) False LOC122325222
XR_006247310.1 other upstream 169930 7540125 ~ 7540240 (-) True LOC122325568
XR_006247193.1 other upstream 220383 7590578 ~ 7601602 (-) False LOC122324530
TU202009 other upstream 323760 7693955 ~ 7696065 (-) True G136754