RNA id: XM_043219612.1


Basic Information

Item Value
RNA id XM_043219612.1
length 2306
RNA type mRNA
GC content 0.43
exon number 11
gene id flvcr2b
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 21824555 ~ 21835801 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTTTGAAGAGTTTCTGCTGCGGCAACCGGACACTTTATTAAGTCCGAGCAGAGGAAAGCATGCGCTGATGCACTATGGGAGGTTCATCCACTAGCATTTAAACTCAGGTAACATGTCATTCGTTTATTATGTAGAACGTATTTAGTTAGAACAGACTTTGACATGTTATACAGTACTGCAGCGAGTTCCAATAATATTAGACCGGCGTCTCCTcattatgaatgaatgagtcGTTCAGGGAAGTTCGAGTGAAAATGGGTGATGAATCAAAGCAAGCGGACGGAGAGGTGAACGATAACAAGTATTTCCCAAAAACAGACTCCACCGATGCAGAGGTGACTTTTGAATACCGAAACACACCGCCGGAAACGCGTTTATATAAAAAGAGATGGGTCATAGTGCTTTTATTCAGCTCGTACTCGCTGTGTAACTCCTATCAATGGATTCAATACGGAATCATCAACAATATCTTCATGCGCTTCTACGGCGTGGACTCTTTCACCATTGACTGGATGTCCATGATTTACATGTTGACGTACATTCCGCTCATTTTCCCCGTCTCTTGGCTCTTGGATAAAAAAGGGCTGAGGGTCATCGCGCTCGTGGCCGCCGCTCTGAATTGCACGGGCACGTGGATCAAGGTGGCCAGCGCGAGACCGGACCTTTTTCCGGTCACATTTTTGGGTCAGTTCACTTGCTCGGTGGCTCAGGTGTTCATCCTCGGGATGCCCTCGCGCATCGCGTCGGTGTGGTTCGGATCGGAAGAAGTGTCCACTGCATGCTCCATCGGGGTCTTCGGAAATCAGttgGGGATCGCCATAGGCTTTTTAGTTCCACCAATACTGGTTCCAAATGTGGACGATCTGGACAAGTTGGCGGCTTACATCAGAGTCATGTTCTACATCACGGCGGGGGTGGCCACCTTCCTGTTTGTACTGGTTATTATCGTGTTTGAGGAGCGTCCGGAGATCCCTCCCACCCACTCTCAGGCCGCATCCCGGCGGATCTCTCCCGAGAGCTACTCATACACAGCATCCATCCTCAGGCTGCTCCGCAACAAAGCCTTCATCCTCCTCGTCATCACTTACGGGCTGAATGTTGGCTGTTTCTATGCTGTCAGTACGCTTCTCAACCGAATGATCATTGAACACTATCCTGGAGAGGAGGTGAACGCCGGCAGGATCGGCCTCACCATCGTGATCGCTGGCATGGTGGGATCCCTCATCTGTGGGATCTGGTTAGACCGATCTAAGACGTACAAACAAACGACTTTAGCCGTGTATGTGATGTCGCTTGTGGGTTTGGTGCTTTATGCTTTTACCCTGGACCTGGGTCACCTGTGGGTGGTCTTCATCACAGCAGGAGCTCTCGGGTTCTTCATGACGGGTTACCTTCCCCTCGGTTTTGAGTTTGCAGTCGAATTGACTTACCCAGAGTCGGAGGGGACGTCTTCGGGTCTTCTGAACTGTTCTGCACAGGTATTTGGGATCATTTTTACGATCTGTCAGGGGAAAATCATGGACTCTTTTAATACTCTGGCTGGGAATCTGTTCTTGTGTGCCTTCCTCCTGATAGGAACCATAATTACAGCCTGTATTAAGTCAGATCTACGCAGACAGCTGGCAAACCAGCAAGCACTGGCAGCTAACGACaacaaagaaaaggaagaaaagataatgcaacttaaaaaattaagtgtaaTGACCTATGACAGAACAGTAGAACATTGAGTGGAAAATGCATACaaagaaaaatactaatttaactGCTCAGGGCCCTGTGGAAGTGTCATCGGCACAAGCTTTAGAAGCCAAACTCTAATGTGATCCAGGGACGGATTGTGTTTATCCGGCCTTAAATTTCGAACTTTTGAATTGTTatttggtttgtgtttgtgtttgtgtgtgtatgttcatttgaactgtGTTGAGAGTTTATAACAGCCAGGGACTGAtcgttttttttagttttttttttttgttttgtttatttgtctttttgcaTGTTGTGATCATTTGAGTTAACTTGATCACTAATCATCTCAAATAGgatatattctatttttataaactAGTTTATCAATtgatgatttaatttattaatggtaacataaattgcatttcattaaacaatttcttattgcatgtaaaaaaatttaaatttaaaaaataaaaataaatctgatgaAACTCATAAGAATGTGGAGCATTTCAATATTGTCTGAACTTTATAATAGAAACCGAAGCAACACCATTaagaactgttttatttttatacagtcgtttaatttttttttttactttaa

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207872 lncRNA downstream 50186 21771030 ~ 21774369 (-) True G140801
TU207947 lncRNA downstream 55958 21727653 ~ 21768597 (-) False G140859
TU207948 lncRNA downstream 55958 21727653 ~ 21768597 (-) False G140859
TU207946 lncRNA downstream 55958 21766949 ~ 21768597 (-) True G140859
TU207881 lncRNA downstream 125280 21698420 ~ 21699275 (-) True G140807
TU207986 lncRNA upstream 4714 21840515 ~ 21840765 (-) True G140882
TU207988 lncRNA upstream 5961 21841762 ~ 21842034 (-) True G140884
TU207989 lncRNA upstream 6325 21842126 ~ 21842345 (-) True G140885
TU207990 lncRNA upstream 6631 21842432 ~ 21842922 (-) False LOC122324884
TU207991 lncRNA upstream 8214 21844015 ~ 21844633 (-) False LOC122324884
XM_043218877.1 mRNA downstream 9526 21799332 ~ 21815029 (-) True adgrg11
XM_043218886.1 mRNA downstream 25423 21794229 ~ 21799132 (-) False rad51
XM_043218887.1 mRNA downstream 25517 21794228 ~ 21799038 (-) True rad51
XM_043218878.1 mRNA downstream 37071 21779327 ~ 21787484 (-) True zc3h14
XM_043219616.1 mRNA upstream 158 21835959 ~ 21838930 (-) True LOC122324883
XM_043219617.1 mRNA upstream 6799 21842600 ~ 21844333 (-) True LOC122324884
XM_043219989.1 mRNA upstream 9413 21845214 ~ 21846605 (-) True LOC122325102
XM_043219988.1 mRNA upstream 16258 21852059 ~ 21854252 (-) True LOC122325101
XM_043219990.1 mRNA upstream 22275 21858076 ~ 21864517 (-) True stx7l
TU207950 other downstream 83551 21732546 ~ 21741004 (-) False batf
TU207887 other downstream 312202 21509629 ~ 21512353 (-) False LOC122324936
TU207613 other downstream 545814 21198710 ~ 21278741 (-) True G140616
TU207486 other downstream 848805 20973404 ~ 20975750 (-) False crnkl1
TU207179 other downstream 1761578 20061602 ~ 20062977 (-) True G140277
TU207987 other upstream 5312 21841113 ~ 21841468 (-) True G140883
TU207994 other upstream 10005 21845806 ~ 21846917 (-) False LOC122325102
TU208103 other upstream 276801 22112602 ~ 22113044 (-) True G140972
unassigned_transcript_2511 other upstream 279237 22115038 ~ 22115120 (-) True trnal-uaa_36
unassigned_transcript_2512 other upstream 279906 22115707 ~ 22115789 (-) True trnal-uaa_37

Expression Profile