RNA id: XM_043219616.1


Basic Information

Item Value
RNA id XM_043219616.1
length 2972
RNA type mRNA
GC content 0.34
exon number 1
gene id LOC122324883
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 21835959 ~ 21838930 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAAATACTCCACAATGAATCTTACAGCAGTGAACCGAAGTGATGTCTGTCAGGAATATTCATGTCCAGAGAGATCAGTTTCTTTATCTGTGTATGTGATTCTGTATGTGGCCGCAGCAGCTGTGTCTCTGCTGACCGTGTTTGGAAACCTGCTGGTCATCATCTCTGTGAGTCACTTCAAGCAGCTCCACACACCTGCTaacatcctcatcctctctCTGGCTGTGTCTGATCTACTGGTTGGAGTTTTTGTGATGCCACTGCATTTGTCTTGGGTTATTGAGTCATGCTGGATCTCTGGACCAGTGATGTGttctgctttaaaagttgtGAATTTTCAAGCAACGAGTGTGTCTGTTCACACTGTGGCTCTGATAGCAGTTGATCGGTTTTTGGCTTTAAGTTCTCCTTTTTTTTACTCAGAGAAAATCTCACCCACTGTGATCTGCATAGCAACTTTATTTAACTGGTTGTTTTCACTCTTTTATAACTTCACTCTTCTTTTTGTTAATGGAAAtttcactgatgtcacatgtcCAGGAATATGTATTGCTATTATAGATGGAATTTCATCATTCATTGATCTCATTGTTGTGTTTCTTATGCCATGTTtacttattataattttatacactCATGTTTTTGTCATTGCTAAGAGACATGCAACTGCTATAAGAGCCCTTAAGGTTCATAACAGCACAGAAACCTCCAAAAACAGAGTCAGTGACAAATCAGAGAGAAAAGCTGCAATACTGCTGGGGATTCTAGTCATAATTTTTCTCCTGTGTTTACTGCCGTATTATATTTGTTCTTTAGTGATTCCATACAGTGGTGATGATTTGTTTTATGTCAGAGATGTTACTGTCATGCTTTTCTTTCTGAACTCCACCATTAATCCCATAATTTATGCTTTATTCTATCCCTGGTTTcagaaaagtttaaaattaattttcacatttaaagtgtttaataaaGACTCATCACTGATGAATGTGCTGTAAGTCACTAATCATAAGAGACAATGATTCCTAATTTATTCCTGATTTTCCTATAGCAAATGATTTTGTCTCATACTAAACTTGACTGTGAAGATGCAGATATTGTTGTTAATCATGCCAGTATACTGTCTAACATCGATGAGGGgaattttattttcctttgttATTTGCATAtctattatattttgtgttttgtttgtaatgaGCAATTaagaacaaatttttaaaacaaaattgtacAGTTCTCATAATGCCATGATAGCTAGACATTGACATTAGTATCATTATGTAGACTTAcatgttaaatgtaatgtaataaatacttAATGTATAATACTTagcttaataatatttatttttattaatgcagaAATGCATTCATAACAGACTGACAGTACTCTCAATTTTAATTCACACTCAAtcgtaataaaaataaataaataaagacagagaAGAGGTAGGTAAATAGATATTTTTCAGATTATGAAACCAAAATCTTCCAATAAAGAGTATAAATATCTTGCTTTGGGACTTTTCATTTACTCTTAATGTCTCCAAATACATCCTCTTTAAACACTGCTAAATGTGGGggagttttcaaaaatgtacatttatgaatgaaatattttgacagaagcaacaaattatttaatacaatatctTTTTATCCTTAATTAACGAGCCAAATTTTAAGGATCAGTTTTATAGGTCATCTTTGGTAAATCCAACAGAATGCATCATTCCAGAATGTTTGTACCAAATTAGacagaaaaatcttttttgcaGGATAAATGTGattcagaattttaaaatgcacctCTTTACATTTAGGGGTGACAGAATGTAAGAAAATTGGTTCTaatttcaaacacatttttcatatcaaattgaaaaaatatataagatcCCTCCCTGGTCCTGTAAAACAAAGTTCCAATAAACAATTACCATATGCTTTAGGGGCAACTTACATTGTATTTACCACAAAATATTCTCATAACTTAAGATACTCCCTAAGTTGTCCATAATATGACCATATGCCTTTTTTCCACCAAATCATCAATAAACAAAGATTTTCTATTCACCAAAATACACCTTTTATTCCAGATGGACATGTTATGTGggctaatatttataatgttggaAATATTTAGTTGGAGCATTTAATGGCGCAGAGTTTGACACATCCGGTTCCACACGTCAATAGCCAAAACTTCACCGGAAGCTCCAACCTAGCAGAGGGCGCCATCTCTTTCGTACTGCCCACAAACATCAGTGATCTAAAACCAGTGGGATGTTTCAAGTCTGTGTTATTAAAGTATTAACCAATAGTGGGCGCTCTGTGGCTCAAAAAGTTGAGTCCTACAGTGAATAGCATTCAAATCTCATGTTTTTGTGGGTGTTTGCATACTAAAAATGATCATCCTGACTTCAAGAATTGGTATCTGGAATAAAAGGTAAAACCCACTCCAGGCATCACTATAATACAATTCAATAAACTGATGTGCTCTGTTATCACAAACGACATTTTCCAGTACTGATGCTGCGCTGCTCATCGCTATAAAACTGCTGAGTTCCTGATgtaaacattatatttcactTATATTTGCCGCGCTAATAAGTACTTATAAGTGATTTACTCTCCGATGTGGCATCATCTGTTTATTTTGCGCTACTAGAGAattatgggaaatgtagtttcgACGTACAATTTTCCGCTCACTGACCAGGTAAACATATAACAAGTATGCTTTGTTCTTAATTAGCATTACACAAAATACGTAATTAATTATCTCATTGATATTTACTGAATAGGAAAGtcttaaagaaaagaaattatattttaaaactggaaatatttacattatcgTTCCAGAAGGACTTGATCGAATCACACCCCTTCGTTTATAGCTACTTATTTCTGTAattctttaatttagttttgaagCGTATACTGTATCGTTGTTCTCATTAT

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207872 lncRNA downstream 61590 21771030 ~ 21774369 (-) True G140801
TU207947 lncRNA downstream 67362 21727653 ~ 21768597 (-) False G140859
TU207948 lncRNA downstream 67362 21727653 ~ 21768597 (-) False G140859
TU207946 lncRNA downstream 67362 21766949 ~ 21768597 (-) True G140859
TU207881 lncRNA downstream 136684 21698420 ~ 21699275 (-) True G140807
TU207986 lncRNA upstream 1585 21840515 ~ 21840765 (-) True G140882
TU207988 lncRNA upstream 2832 21841762 ~ 21842034 (-) True G140884
TU207989 lncRNA upstream 3196 21842126 ~ 21842345 (-) True G140885
TU207990 lncRNA upstream 3502 21842432 ~ 21842922 (-) False LOC122324884
TU207991 lncRNA upstream 5085 21844015 ~ 21844633 (-) False LOC122324884
XM_043219612.1 mRNA downstream 158 21824555 ~ 21835801 (-) False flvcr2b
XM_043219611.1 mRNA downstream 158 21824555 ~ 21835801 (-) True flvcr2b
XM_043219615.1 mRNA downstream 160 21824555 ~ 21835799 (-) False flvcr2b
XM_043219614.1 mRNA downstream 160 21824555 ~ 21835799 (-) False flvcr2b
XM_043219613.1 mRNA downstream 160 21824555 ~ 21835799 (-) False flvcr2b
XM_043219617.1 mRNA upstream 3670 21842600 ~ 21844333 (-) True LOC122324884
XM_043219989.1 mRNA upstream 6284 21845214 ~ 21846605 (-) True LOC122325102
XM_043219988.1 mRNA upstream 13129 21852059 ~ 21854252 (-) True LOC122325101
XM_043219990.1 mRNA upstream 19146 21858076 ~ 21864517 (-) True stx7l
XM_043220544.1 mRNA upstream 25958 21864888 ~ 21865886 (-) True taar15
TU207950 other downstream 94955 21732546 ~ 21741004 (-) False batf
TU207887 other downstream 323606 21509629 ~ 21512353 (-) False LOC122324936
TU207613 other downstream 557218 21198710 ~ 21278741 (-) True G140616
TU207486 other downstream 860209 20973404 ~ 20975750 (-) False crnkl1
TU207179 other downstream 1772982 20061602 ~ 20062977 (-) True G140277
TU207987 other upstream 2183 21841113 ~ 21841468 (-) True G140883
TU207994 other upstream 6876 21845806 ~ 21846917 (-) False LOC122325102
TU208103 other upstream 273672 22112602 ~ 22113044 (-) True G140972
unassigned_transcript_2511 other upstream 276108 22115038 ~ 22115120 (-) True trnal-uaa_36
unassigned_transcript_2512 other upstream 276777 22115707 ~ 22115789 (-) True trnal-uaa_37

Expression Profile