RNA id: XM_043219623.1


Basic Information

Item Value
RNA id XM_043219623.1
length 7715
RNA type mRNA
GC content 0.51
exon number 53
gene id nbas
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 17152343 ~ 17286892 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGGGCGCAGTCCAGTTCATTGAAAACATGGCAGGTGATATTATTCAAGAAGACGAAGAGgagaatattttatatgatttactCATTAACACAGAATGGCCGCCCGAAACAGATACGCagctGCGTGGACTGAAGGAACACAATTCTTCACTCGTTGCAAAGGCAGTAACAGGGCCCTTCAGGTTTTTTCTGCACTATCTTTGGTACAGCCCCTCCAGTTCAACTCTGCCACCTGGACTGGTTCGCCTTGCAACCAAACAGTTGAACTGGCAATTGGTGCTGGCAAGTAATGGGAAGCTCCTGGCTGTGGTTCAGGACCAATGCGTGGAAATTAGGTCAGCTAGAGACGACTTTGGATCCATCATAGGAAAATGCCAAGTACCCAAGGATCCGAACCCTCACTGGCGCAGGGTAGCTTGGAGTCATGACTGTGCTCTGTTGGCATATGCTGACAGCACCGGGACGGTCCGAGTCTTTGACCTGATGGGCAGCGAACTCTTCATTATACCCCCGACTATGAGCTTCCCGGGAGATTTCAGCTACGCAGCAGCTGGTCTGATGTTCTTGGAATACACCGGCAGTGCCCAGTGGTCAGCCGAGCTGCTGGTGATCACCTACAGCGGTCAGCTCAAGAGTTATCTGGTCAGTGTTGGGACCAATCAGGGTTTTCAAGAGAATCACACTTTCAGTTTCTCCGCCCACTATTCCAATGGCATTACCACAGCAATATATCATCCTGGCCACAGGCTGCTGCTGGTGGGAGGGTGTGAGTCTGGAGACAGTGATGTGTCCCGGGCGAGCCGCTGCGGGATCACAGCGTGGAGGGTGTTGTCAGGGTCACCTCACTATAAACAGGTCACCAGTTATGAGGATGACATCAGTGCGTCCCAGAGGCGAGGATTCTTTCGAATGCCCAGCTTTCGACTTTTCTCCAGGCAAAACAGTGAACAGGATGGCGTGTTTCGAATGAGTCTGTCTCCTGATGGTACAGTGCTGGCTGTGATCCACTTCTCTGGCAGTCTCAGTCTCTGGGATATTCCATCATTCAAACTGAGAGGCAGCTGGAAACAAGAGGAGCAACCGGGATTTGTCGAGATCAACCCGGAATGGAAGACTTCGctggagaagagaaagaagataAAAGATAAGGAGCAGTACCAGTCTCTGCTAGATGTGAGCTGGTGGAGTGAGACTGCTTTGATTTTAGCCCGCTGTTCTGGGGCTCTCACGGTCTCTTCTGTGCGCACATTAAAAAACTTACTCGGCAAGTCCTGTGAGTGGTTTGAAACCTCACCGCGAGTCACCTCGGCTTATGATGGGGGCTTCCTCAGTTTGGAGTGTGAGGTTAAGCTGGCCCATAAGCGTTCTCGCCTGGAGAGCAGCGTGACGGGTGAAGAGGACGATGGAGATGATGACTCCGACTCGGACGAAGAGTCCTCTGCGAAGGCACGTTATTTTGGATACGTGAAGCAGGGTCTGTACTATGTGACTGAGATGGAACGCTTCGCCCCTCCCCGAAAACGGCCACGCACTGTTATCAAGAACTACCGTCTGGTCAGCCTAAGGTCCACCACACCAGAGGAGCTCTACCAGAGGAAGatTGATAATGAGGAGTATGGAGAGGCTCTCTCTCTTGCTCAAGCATATGGTCTGGATTCCGATCTTGTCTATCAGAGACAGTGGAGAAAATCTACAGTCAGCATTGCTTCCATTCAGGACTACTTGagtaaaataaagaaaagatcaTGGGTGCTGCATGAGTGTGTGGAGCGGGTTCCAGAGAATGTGGACGCGGCCAAAGAGCTGCTGCAGTATGGCCTCAAAGGAACTGACCTTGAAGCACTGATCGCCATCGGTGATGGAGAAGACCAGGGAAGATTCATCTTATCAGGTGATTTGGATCTGGATGATGCCCCATACGAAGATTTTCTTTCCATGGAGGAAGAGATGGAGCAAAGAAAAGAGAGGGAGGCCAATAAGAGACAGGAGCTCCTCAAAAAAGTGGACTTCAGCAAACTGACTCTAGAGCAGAAGGAGCTCTGCAGAAGTAGATTGAAGCTTCTCTGCTTTCTGGACCGGTTGGCCACTTATGAGGAGATTCTGGGTGGACCTCATGCGGCAGAGCAGCGATTTGATGCTGAGTTTTTCAAGAAGTTCCGCAATCAGAATATTGTTCTGTCAGCAAGAACGTACGCAAGGgaGAGTAACGTGCAGGCGTTGGATATTCTCTTCACTTACCACGGCTCTGAGCTGCTTCAGCACCGGCTCGCCGTTCTTTGCAATTTCCCAGAAACCACCTCTCCTCACGAGTACTCCGACCTTCTGCCTAAGGCAGGtgtggataaAAAGGGTAATTTGTCTTTCATTCCTTGGGAAGAGAGTCGACACCGAGATCTGGACTGGTGTGAAGTTTCTGAGTGCAGAGAAGTGGTGGAGCCCAACCCAGTGGATGACTGTCACTTTTTATACGAGGAACAAGCAGAACTACAGAGATTTCATTGCGCCAAGCCCTCCATCACACTGCTGACTGAGTGGTACCTGACCAGGGCGCAGGACATAGAGAGCAATTCCCGCCAGGTTGATTGTGCTCTGTCTCTGGTGCGTCTGGGAAAAGAGCAGAACATTCCTGGGCTTGAGGTGCTGTGCGACGACCTGGTTACCATGGAGACACTGGTGTACGAGACGTCATGTGACCTGAGTCTCACACTAAAGGAGCTGCAGCAGCTCAGGGACATtgacaagctccgcctccttatgaaaaatTCCAGTGAGGATCGATATGTGAGGAATTCATTTCAGTGGATGGTCCCGTTTTTGCATCGCTGTGAAGGACAGCGTGTGGGCTCTGCCTCCACTTTGCTCAGAGAATATCTGGTCACCCTCGCCAAAGATGATCTAGTACAACCATTCAAAATCTTCCAGCACTCAAAGCCAGATTGTCATCAAAAAGTCATTGGAGATTCGGATCAGCTTATGTCCGTGGCATTAGAGTGCATCTACAGCTGTGAGAGAGATGACCAGCTTGCACTCTGCTACGATATACTTGAATGTTTACCGCAGAGAGGATATGGgcCAGAGTCAGACTCTACAAAAGCCTTGCATGACCAGGTGGACACTCTTGAAAAACACTTGAGTGTTGCTGAGGTTTTGGAGAAGCATGGTCTTCAGAAGCCCATCTCGTTCGTGagaaacagcaaaaacagcaaagagGAAGCGCACCAGCTGATGGTCCGACTCACCCGTCACACAGGACGCAAaaatcCTCCTGTGAGTGAGACAGTATGGAGAAGTTTACTTCAAGATCTCCTGGACATGCAGCAAAATGTTTATACCTGTCTAGAGCCAGAAACCTGCCATCagGTGTTTGTGGAGAGTTTGTTATGTTCGGGACGAGAAGAAAACGTCCGTCTGGCGGGTCAGCTGATGCACTGCAGCGCCGTGTCGGAGGATACTCCGGTCAGCGTTTCGTTCCGTGGTAAAGCTCACGGCCGTGTGTCTTATAGCCGAAGCGTGGAGCTGGTTCTGGCTGCCGCCCGGGAATACTTCAACTCTTCTGCCACCCTCAGTGACCCCTGCATGAACCTGGCACGGTTGTGTTTGCTGTTGATCACGGATTGTCCTTCTCTCGTCCAAGAGGAGTTGGATCTCATCAGTGCCCTCTCTCGATTGGAGCAGTTTGGCGTCAAGATTCTTCCTTTACAAGTGCGTCTGCGGACGGTTCGTCTATCACTGATAAAGGAGTGCATCTCTCAGTGCCCTACTGCCTACAGACAGTCCACTCTCCTCCTCAGCTTGGCCAGACTGCTGCGCGTTGCAGGTGATGATGAGGTCAAGAGGAAGGGTCAGGTGCTCACTCTGCTGGCAGAACAGGCTCTGCGCTGTCAGGACTTCAAGGCCTCCTACATCCACTGCCAGGATCTGATGGCTGCAGGCTATAGTGATGGTTGGGATGTGTGCGCTCAGCTGGGTCAGTGTGAGACGTACTCGCAGCTTTCTGCCCGTCAAGAGCTGATGGCGTTTGCGCTCACACACTCTCCTCCCAGCAGCATCCAGAATCTGTTAGCAGCTTCCAGTTCCCTTCAGACGCAGGTTCTGTACCAGGCTGTAAATTACAAGATTGATCCCTCTCGAGCCCGGAGAACGGCCAGTGAAATGTCTGAGGCCGGAGCTGCTGTTCCTGGATCAATTAAACCCACAGACCTGCTGCACAGAACCACAGCCCGCACTATAGAGGTCCTGACCAACACTACCATGACCACCAGAGCCGTGCTGACCACCGTCAGCGACTCTCATTGGTGGAGGGAGTCCCTCAGCTTACTGCGCCCACTGCACGGACAAGCTGGGGAAAGAAACCGTACTGGTTTGGCCAATCAGAACGCTGATCTGGAGAGGCAGGGGTGCAGTCCTTTCTACGAGGAGCTGTTCGATGATCCATACGTCAATATGTCTGAGGATGTGTATTCCTCATACGACTACACCCCTCAAGAAGACTTTGCTGAAGTTTTACTGCGGACAGGCAAACTGGCTGAAACCAACAGCGAGGGACAGAATCTCTTTCCTGCAACCGAAGTGCTCCTTCAGCTGGCCAGTGATGCTTTTCCCAAAGATATGACACTCGCCCTGGCCTATTTACTGGCTCTACCTCAGGTGTTGGATGCTAACACGTGTTTTGAGAAGCAGCCTCCATCGGCACTGTCTCTGCAGTTAGCCTCGTATTACTACTCTCTTCAGATCTACTCCCGCCTCGCACCCTGCTTTAAAGACAAGTGCAGCCCACTTTACCGGGCTGATCCTAGAGATTTAATTCGTCTTGTGACCAAGCATGTGACAGACCACGCTGGATGTGATTGGGGGGATGAGGAACTGCAGACACTGATTGGTCAATTGAGACTATACAGCGAGAGACTGACAGATTTTACTCAAGCTCAGGTGCTACAGGGACTTGGCCGTGGAGTCGATGTCCAGAGATTTAGCAGCGACAACCAGTATAAGAAAGAGACTATTCTGGGCCTGGCGGAGACATTGGATGAGAGTGTGTATGGAATCTCTCGTTCTCTGGCTCAGCGGTACAGCATCCCTCTCTGGGAAGTGCACATGACGCACCTTGAGTTTCTGTTCACTGATAGCGGGCTTTCCACTAAAGACATCGAGGGCAGGACTGTGGCTCTGGGCCTGTTTGAGACTCTAAAGACCGACCCGGAGTCATTCTACACGCACATGACTAAATATGTGTACCCCAGTATAGCCGGAACCGACCAGCTCCGACTCCTCTTTTACTTCACTCTTCTGGAGAACTGCGGCTGTGCGAGCTACTTCCTTCAATCTGCTATGAAGCCCGACACGCACCTCAAactgctcaaaaagctcaaAGCCGTCGCAGTCGGTCTGGACTATAAGAGGTTGACAGAGGAGGATTCCGACCCTTTGAAAGCTCTGGAGCCGGTACTGACCAGTCAGAACGTCCTGTCAATCTCCAAACTGGCCCCTCGAATCCTCCAGAAGGGAGGCGAAGCGCTTACCTCTAGCGCTGTACATGCCACCTGGCTTCATAAACTGTTCTGGGAAGGGGATCAGCATGTGCTGAAAAAGGCCCCCCAGAGTGATCACGACTTCCTGCATGCCTATGACACCTGTTCCAAATACTTTGACCGACTTCTGCCTGCAGATTCTGTTAACTTCTTGGATGCCATTACCTTTTCCCCTGAGGCAGCCAATAAGCTCTCTGTAGAGACCAGGCTGGAGATCACGAAGCGTGCACAGAAGGCTCTAAAAAGCATAAGTGAGAAGAGTAAGAAGAAGGGTAACGATGACAGAAGCGAGAACTCCGCCTCCAGCTTTGACTCCGCCCTCACTCACATACAGCAGTCACTTGCCCATCTGGAGACTCTGAGCCATTCCTTCCCTCTGTCACTCAAGACAAGCCAAGAggAGCTCTTGCAGAAGTACAGTCGCATTTATGACCTGTCCAGATCCGAGCAATCTAAGGTGCGCCATCTGGCCGTCACAATGGCCATGGACGGACAGCCCCTCGAACGAATCCAGCAGCTGCTCGCAGTCAGCGTGGGAACGAGCGACCTGTCGCCGAAGACCATAGTCCAGGACGCAGTGGAGCGAATCATAACGGCTCTCAGcgGTGACAAGGACGCGCTGAAAGATTATGCAGACCCCTTGAAGGTGCTGGAAGGAATTGTTGCAGCAGTGCACACTAATGTACAGAGCGGtgGGAATATGGTAACATCTGAGGACATGTTGGCATGGTTACGGCCCTTTTGTGGGGACGATTCTAAACCCGTACGACCCAGGATTGAGGTTCTGCAGATCCTAGAACATTCATTCAGCCTCAGCGATCAAGACATCCACCTACTGGTGTTCTTCAGGAGCCAAGCTGTTCTGAAAGCCTGCTGGCCAAACAGAAAGtgtgAGATGAAGGATGTCGAGAATGAGGAAAAGCGGAACTCGTTGTTCCTGGAACTGCTGGAGTCCAGCAGTAAATGGGAGGAGTTTCAACACCTTATGCTCCTCCTACAGGCGTGGCCACCAGTGACTGACAAGAGAAGGTTGGAGACGGAGCAGAACCCCTGGGTGGGGCTTACATCTGCACTTCTTGCACATTCCTCAAGCCTTTCTCAAATCAACGTCGGGGCTGAGGTTCTGACTATGTGCCGCTCGCTCTACGTGACCAAACACAAACTTAACCCACAGTGCGTTGGGTACATTTGCTCTCTGCTGTTGAACGCTGGGATTAGGCTGCCTGCTCTGAAGTTGATGACAGAGAATGAAGACGAGCATCTGCGCAAACTGACCCAGGATCAGATCAAAAGCATCACTGATGTGACTGAGGATGTGTGTGACTCTGAGCTCCTGTCTCTGCTGCTGAACGCTGGGATGTTGATCAGTTGTGTGGACACAGCTCTGTATTCTTCACTGGTCTCTCACATGCTGGTTCAGGGGGAATGGGATGTGGAAAAGACTGCCCGTGACCTCCACCGCGCTGGCCACAGCGCTGAGGCCGGGTCCTTGCTCCTGTCCTACAGAGGATCCCACCCAGGGCAGTTCACCTTCAACAGCGCCCTTTCTGTCATTAGAAAATGGCTTTGAGATTGTGCCTGTCTGTTTgtgtaaagatattttttggAGGCCGATCAGTCAGTAATGGAAAGTAGTCTATCTCAGCTGAATAATATCGAATATAAAGTGGACACTGGCACCAAATCCAGACCACAAATATCAATTATAATTAGACTATTCAGACAGTGTTTGTTCAGGACTTCTTCCCGCTGGCAAAGGACTCAAATCACCTtcctatttctctctctcactgtcgtTTTCTCTCTCCTGACTGAAGCTCGGTGACACGGGTGTAATTACATTACTTCGGCTGTTTGGTCACGCTAGCCTGCGCTAATAATCATTACAGGCCAGAGTCGGAATTGAAAACGCCGCATGTGTGCTGACAGAGTGTTTTGCACGTGTATGTATGTGCGACTTCATGGTTGAGCGTTTCCACACACAACTTTCTGCTCTCTTCCTTTGTAgggttattaattatttttgaagaaaacagATTAGGCCTTCAGGCCGACTGTCGCCACGTGATTGTTTTAACGCACACGGACGCACTATAACCTGTGTCGGGTAGCTGAGCAGTAACGTTGACTCGTCTATGTATTTTAGGCAAATATATCAGAATTgctcaataaaaatattaaaacttg

Function

GO:

id name namespace
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process
GO:0009790 embryo development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205687 lncRNA downstream 26433 17125437 ~ 17125910 (-) True G139302
TU205686 lncRNA downstream 27095 17124823 ~ 17125248 (-) True G139301
TU205685 lncRNA downstream 28084 17123886 ~ 17124259 (-) True G139300
XR_006247281.1 lncRNA downstream 35397 17043647 ~ 17116946 (-) True LOC122325296
TU205449 lncRNA downstream 260883 16889939 ~ 16891460 (-) True G139148
TU205702 lncRNA upstream 49121 17336007 ~ 17336320 (-) True G139317
TU205717 lncRNA upstream 107978 17394864 ~ 17395998 (-) True G139323
XR_006247186.1 lncRNA upstream 109456 17396342 ~ 17409495 (-) False LOC122324490
XR_006247185.1 lncRNA upstream 110542 17397428 ~ 17409495 (-) True LOC122324490
XR_006247201.1 lncRNA upstream 268969 17555855 ~ 17559470 (-) False LOC122324574
XM_043218838.1 mRNA downstream 160540 16984344 ~ 16991803 (-) True nr2e1
XM_043219290.1 mRNA downstream 182302 16949429 ~ 16970041 (-) False afg1lb
XM_043219289.1 mRNA downstream 182302 16949429 ~ 16970041 (-) False afg1lb
XM_043219288.1 mRNA downstream 182302 16949429 ~ 16970041 (-) True afg1lb
XM_043219286.1 mRNA downstream 205165 16921638 ~ 16947178 (-) True foxo3b
XM_043219275.1 mRNA upstream 127581 17414467 ~ 17424811 (-) True smek1
XM_043219276.1 mRNA upstream 127881 17414767 ~ 17424810 (-) False smek1
XM_043220607.1 mRNA upstream 139456 17426342 ~ 17428123 (-) False erh
XM_043220568.1 mRNA upstream 141620 17428506 ~ 17440011 (-) False paplnb
XM_043220567.1 mRNA upstream 141620 17428506 ~ 17439977 (-) False paplnb
TU205287 other downstream 690127 16455468 ~ 16462216 (-) True G139030
TU205233 other downstream 785571 16364810 ~ 16366772 (-) False fndc1
TU205232 other downstream 786876 16364810 ~ 16365467 (-) False fndc1
TU205229 other downstream 789031 16362131 ~ 16363312 (-) False fndc1
TU205141 other downstream 1116090 16028253 ~ 16036253 (-) False LOC122324507
TU205714 other upstream 59920 17346806 ~ 17428071 (-) True erh
TU205713 other upstream 138982 17425868 ~ 17428071 (-) False erh
XR_006247229.1 other upstream 523388 17810274 ~ 17824201 (-) False swt1
XR_006247304.1 other upstream 1056586 18343472 ~ 18350122 (-) True adgrf3b
TU206351 other upstream 1119141 18406027 ~ 18446949 (-) False G139706

Expression Profile