RNA id: XM_043219651.1


Basic Information

Item Value
RNA id XM_043219651.1
length 3925
RNA type mRNA
GC content 0.43
exon number 11
gene id fam102bb
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 17499479 ~ 17515480 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCGTCGCTTGTGTCTTCACTACTACACGACAACACAAAATACAGCAGCACTACACAAGCCTCCGCGGAGCGGAACAGACTCTCACCCACAGGCTACATATCCACGGACGAGCATATCCATTTTCAGGAACGTTTTTGATTTAAACGATGTAGTTCGTGACAGAGGAATCCGTCAAGACTGTACCATTATCGTCGTTAGCGTAGCTTTCTATCACGCGAAGGGGATTCCAGCAGTGGCTAACGGCTATCAGCTCTAACAACAGAGGTTCAGCCGAGATGAGCAAATAAAAGTAATGCTCCTCCACAGCGTATGACCGAAGGCGTTATCGAGCGGTAACAGGACTGCTGTGAATCGACGTCAAgatgatgaagaaaaagaagttTAAGTTCAGAGTTGATTTTGAGCTGGACGAGTTGTCGTCGGTTCCGTTCGTCAACGGAGTTCTGTTCTGTAAAGTCCGCCTGCTTGACGGCGGGTTCTCGGAGGAGTCGTCGCGCGAGACGGTCCAGGCAAACTGTGTACGCTGGAGAAAAAGATTCTCCTTTCCCTGTAAAATGAGCGCTAATGCTGGAACCGGAGTCCTCGACCCCTGTGTGTGTCGAGTTTCAGTCAGAAAGgAACTGAAAGGTGGAAAGACGTATGCAAAGCTGGGTTTTGCTGATCTCAACCTGGCAGAGTTTGCAGGATCAGGTAGCACCACACGCAGGTGTCTGCTGGAGGGTTACGACACCAAGAACACTAGACAGGACAACTCCATCCTTAAGGTGATTATCAGCACACAGCTGATGTCTGGGGACCCCTGTTTCAAAACGCCTCCATCCACCGCAACGGTAATAGGCATTCAGGGTGATGCAGAGAGCTTGCTGGAAGACAGGAAAGGAGGAGACACACAGAAACCTTTTCTGAGTCTCTCAGAGACATCAGGGAAGTGTGGTTCTCTGCCTGATGAGCTCGGGCTTTGCGGACACTCTCGAACGTCCAGTTACGCTAGTCAGCAGTCCAAAGTATCAGGCTATAGTACAAGTCACTCACGTTCCTCCAGTCTGTCGGAGTTCTCCCACAGGAGGAACACTTCGATTGGGAGCGCTTCCACCGGCATTGCCAGCATCCCTGAGCCCAGTGAGGAGAGTGACCAAACTGCAGCGCCCCCTACAGCCCCGGGGGTCTGCGCGGCTGTGCCTGAAAACCCATCAACCCCCGACAGAGCTGCCAGCAGGTATCCAGTGAAACAAGACTCTATGGAGTCTCAACTGAAAAGGGTGGATGCCACACGAGTAGATGCCGATGATGTGGTGGAGAAGATTCTTCAAAGCCAGGATTTCACCCACAGTTTGCTAGATTCCAGTGCTGAAGaggaaGGTCTGCGTTTGTTTGTGGGTCCTGGTGGGAGCACAGCACTCGGTAGCCATCACCTTCCTGCCAGGGTTGGAGCTGGTGCCTACGAACAGGTGGTGATCAAACGCTAGAGTTGGGAGATGCCAGAAGGAGAAGTGTCAAAAACCAAAGTCTGTTTCGTGGGAGGAGAAAGGGACGAAGAGCTTTTAGACATGTTGGTCTCCTCTCACTTTAGGAGTGTTTGTCACGAACCAGTTTCATCGTTTCGATGAAACGGTGTCCTCTGCTGGTCACATAAAGAAGTGACAGCTGCTCTGTATGAGGCTGCCATTATAGGTGTCTGTGTTTCACTGTGAGGTAAAGTTTGTCTCCTATTACGTCTGCATTGAAAATCAAAGAGCTTTTCTCTACTTTCCTTGCtgatttttaagaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgttgttttgtttagtaagatctctttatttttacctatgtttacatgtttatgAGCCCTTTTAGGGGTCTGTCAGTGACATATTGATGGATTGTATACATCTTTTACAATACGTATAAGGTGTATACTGTCTCTGCAGATGAAGGTGACCtctttacaatttttttgttgtcatcTCATTACTGTCAGATTGGAAATCAAACTGTCCTCACCCACCCGCGGCATCTCGCTTGGTGCGTGTGAGAAGTCGTGATGCATTTTGACAGATGGAGCCGACTTGAAAAATTCATTCGAATAGCACTTTGAATTGAAGGACTTTACACGGGCTTTCTGTGCATCTCCATCATTGTAGGAAGTTTTAAGGTTGAGCTGTTGATCGAGGTCATCCATacacagaaatgtttatttcttctttatGCGTCGCCAAAAGCAACTTTCGGTTGGAGAACTTAAATGTAGATGAAGCTCACACAGCTGAATGGGACTCCTTCGCAGTTCAACGCATGGACGCATTAGCTACCTAAAATCCGAGCAGCTGAATATCTAATTAGATGAGTACATATCTGGCATCATTAATGACATCACGTAAATGTATTGGCTTTCATGCGAGGACAAAACGAGCCAAGATGTTCTCAAGCTACAATTAGTAACTTGGCAGCACAGAATGAAGCATTTAACTGTTTCAGCAGTGCTTCAAACGTTTAGCACAAGGCTCTCGAGCAGCGTGTAGCTCTTCATATCCTCTCCATAACACTACGAAAACTTTTTACCCACGTTTTTGTAGTTACTCGGTGTATCACTAAAATGAAGGTATTTTAACGATTACTTTAATGGTATCTCTGTCAGCTCTAAAGCATATCAGAATCGTACATTAGTGCTTTTCAAGTTTTATGTGACCGTATGCCCATATCTACTCGGAAGCCATTCactgttttattaatatcaacTCACTTGCCTCTGCGATTTAAGAGTGTGTGAGGATTCGCAGCTGAACAAGTGTGTATACAAACTATTTGTAGCACTCGATCGTCTCATAACTGTCTAGAGTTTTAGTGTAGAAATGCATGGGTGTCACACCTACTCAATGTGTCCGAAGCATTTTGTGTAGTCTTTGCTATTTCCATCGGATCGATCCAGGTCTGTCGATATccaaacactaaaaaaaaaaaaaaaaacattgacggGAAGCTTGGATTCATCTCGGCCACACGTCTcaggtttattattttatcttgcGCATTTACTGCACAAATATCAAAGCACCACACTGCAAATGCACAGAGCCCTTAAAGACCCACGTTGATATGTATAAATATGAGATTGGAGCACAAATTATGTATCAGTGCTTTTGCGTTCTCTAGCAAATGTTTTGGATCGCTTACAGAAACGTAAACAGAGCGCTAAAGATGATTTTTGCATGCAAACAAGTTTCTTGCAGAAACGCAaaacattttgcaataaaatgctGAATGTCTTGAGaattacagtgtttttgaaaaatattttgacttttgtGAGAAAATACAAAACCATTGAtacacttttttccccccatctcATATTCTTCATCATGTCCCTTTAAGAGCTCTGTAGTGAATGTTTTCAAATACCAGTATATTTAGAGATTATCTGCGATATTTCAGCTTCATTACTTTTCATCAGACACTCAGCAATGAGCGAGTTATtttaaacttgattttttttttttaattgatctaCTGCCAAAATGAAAgtctatttttatgtatttgagcTTTAGTGATACTGAAATTGTGTGAAGACTCACTTCCCCCCTCCCCCTCCTTCCATGTTTCCTTAACTACTCTTACATATCCTGTAAGTAGGTCCTGGTACTTTACATGTTGTAAAAACATGGTGGCTTTTATCTCTTCTGTGAAGTTTTTGGTCCTTGTAATTGTACTGTGTCTGACGTTTAAAAGTGACATTGCTTTTTTTGACTGTCTTGCAATGTTGTGTTCTAACTTTTGACCAACGGTGGCTTCCATGCCACGTGTTCTGTTACGATGCTGGTAAAGTATGAACCATGCACTGTTAAATAAAACCGCATTTCAAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247186.1 lncRNA downstream 89984 17396342 ~ 17409495 (-) False LOC122324490
XR_006247185.1 lncRNA downstream 89984 17397428 ~ 17409495 (-) True LOC122324490
TU205717 lncRNA downstream 103481 17394864 ~ 17395998 (-) True G139323
TU205702 lncRNA downstream 163159 17336007 ~ 17336320 (-) True G139317
TU205687 lncRNA downstream 373569 17125437 ~ 17125910 (-) True G139302
XR_006247201.1 lncRNA upstream 40384 17555855 ~ 17559470 (-) False LOC122324574
XR_006247200.1 lncRNA upstream 40384 17555855 ~ 17559470 (-) False LOC122324574
XR_006247199.1 lncRNA upstream 40384 17555855 ~ 17559470 (-) True LOC122324574
TU205818 lncRNA upstream 99677 17615148 ~ 17615699 (-) True G139386
TU205819 lncRNA upstream 100322 17615793 ~ 17616508 (-) True G139387
XM_043220564.1 mRNA downstream 17945 17455737 ~ 17481534 (-) True rock2b
XM_043220573.1 mRNA downstream 44042 17453042 ~ 17455437 (-) True LOC122325537
XM_043220568.1 mRNA downstream 59468 17428506 ~ 17440011 (-) False paplnb
XM_043219300.1 mRNA upstream 8147 17523618 ~ 17554947 (-) False atf6
XM_043219299.1 mRNA upstream 8147 17523618 ~ 17554947 (-) True atf6
XM_043219098.1 mRNA upstream 70913 17586384 ~ 17595986 (-) True LOC122324570
XM_043219099.1 mRNA upstream 74226 17589697 ~ 17595986 (-) False LOC122324570
XM_043219105.1 mRNA upstream 81922 17597393 ~ 17602425 (-) True LOC122324572
TU205714 other downstream 71408 17346806 ~ 17428071 (-) True erh
TU205713 other downstream 71408 17425868 ~ 17428071 (-) False erh
TU205287 other downstream 1037263 16455468 ~ 16462216 (-) True G139030
TU205233 other downstream 1132707 16364810 ~ 16366772 (-) False fndc1
TU205232 other downstream 1134012 16364810 ~ 16365467 (-) False fndc1
XR_006247229.1 other upstream 294803 17810274 ~ 17824201 (-) False swt1
XR_006247304.1 other upstream 828001 18343472 ~ 18350122 (-) True adgrf3b
TU206351 other upstream 890556 18406027 ~ 18446949 (-) False G139706
TU206365 other upstream 891283 18406754 ~ 18442292 (-) True G139706
unassigned_transcript_2507 other upstream 1560575 19076046 ~ 19076118 (-) True trnaf-gaa_119

Expression Profile