RNA id: XR_006247237.1


Basic Information

Item Value
RNA id XR_006247237.1
length 5467
RNA type transcript
GC content 0.48
exon number 25
gene id nrxn3b
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 3638289 ~ 3870066 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGAGCTCTGGATGCGCGGATTATCCCGCTACACTGGATTTGACCTCAGCATCATTCCATCCGCGCTTCATCACTCGCGATGTGGATTTAACGTGTTTTAGACAATTTGTAGAATAAACCGGAATCTCCGTCGGTGGAATATAATCTTCATCATATGAGATCAGTCAAAAGAAGGACCAATGTGGCCATTAACATGTGGCGATATAATAGAATCAGAAACAATATGGAGCATCTCTGTTTTAGTCCAGAAAGTCGACTCAAGGGAACATCATCAGTAACGCCTATCTAGATAGCAGAAGCTGACCGGTTGTTCACTTCTAATCTAAAAGTAATTTGGTCTGTTTGGAATTCATCCTGGTACCCCTAACAGGATTCAGGATAGCATGTGTCAAGAACCTCAATGGCCTCACCTATATGTTTATCATCTAAAGGATTTGATGTTTCCTCAATGATCTTCACATCATTTACCAGAAAGCGTAACTGAGGAATTTTAGTTTGTTCAGTACACTCTTGTAGCATAACCACTGGTTACCATGCCTCTCATTTGCCGGCCCCATTGTGTACTATTACTGCTCAGCACCTTCCTGAGTCTCGGCTTGGGCCTGGAGTTCACAGGCTCAAAGGGTCAGTGGGCACGCTATCTACGCTGGGATGCCAGCACCAGAAGTGACCTCACCTTTCAATTCAAAACAGCTATATCTGATGCTCTGGTTCTCTACTTTGATGATGGAGGATATTGTGACTTCCTGCTCTTGAGCATTGAGGAAGGCAAGCTGAAGTTACGTTTTAGTGTGGACTGTGCAGAAACCACTATAACCTCCGACAAGATGGTAAACGACAGTCGTTGGCACTTTGCCACCATCAGCAGGCACAACTTGCGAACCGTGTTGGCACTGGACGGAGAGTCAAAGGTGGATGAGGTGAGACCGCAAAGGCAGTTCATGAAGATTGTCAGTGACCTGTATCTTGGAGGAGTGCCTCAAGACATTCGGACATCTGCCCTAACACTTCCAGCGGCTAAGGAGATGCCACCGTTCAAGGGGATTATTACAGACCTGGGTTACGGGAATCAGGTTCCAACACGCTTGGGGAGCCAAAAGGTCCGCTTAGAGATGGAAGGCTTGTGCACGGAAAACCCCTGTGAAAATGGAGGCAGTTGCAGCATGGCTGACGGTGAAGCTTACTGTGACTGCTCCAAAACAGGATATGTAGGTCGTTACTGCAATGAAGCTGTCAACAAAACCCCTGGGTTCGCGCATATGGTGAAATCTCCGCAAGGCAGAAATAAAGCACGCGAGGACAACGTTGCGACTTTCCGGGGTTCGGAGTACTTCTGCTATGACTTGTCTCAGAATCCTATCCAAAGTAGCAGTGATGAGATCACTCTATCCTTCAAAACTTGGCAACGCAATGGTCTCATCCTCCACACGGGCAAGTCGGCTGACTACGTTAACCTTGCGCTGAAAGACGGTGCTGTTTCGTTGGTCATCAACCTGGGCTCAGGAGCCTTTGAGGCTATCGTTGAGCCCGTCAATGGAAAGTTCAATGACAACGCCTGGCATGACATCAAAGTGACACGCAACCTGAGACAGCACTCAGGCATTGGACACGCTATGGTGACTATATCGGTTGATGGTATATTGACCACCACAGGATACACTCAGGAGGATTACACTATGCTGGGCTCAGATGATTTCTTCTATGTGGGGGGAAGCCCAAGCACTGCTGACCTGCCTGGATCTCCTGTCAGCAATAATTTCATGGGCTGCCTGAAAGAGGTGGTgtacaaaaacaatgacataCGACTGGAACTCTCTCGTTTGGCCCGCATTGCAGACCCCAAAATGAAGCTACAAGGGGATGTGGTGTTTAAATGTGAGAATGTCCCCACTCTAGACCCTATCTCCTTTGAGACACCGGAATCTTTCCTCGGCCTACCTAAGTGGAACACCAAGCGTGTGGGCTCAATTTCCTTTGACTTTCGCACTTCAGAGCCCAACGGACTAATCCTTTTTACGCAAGGTAAACCCCAGGACAAGAAAGATTCTCGTAGCCAGAGGAGCAACAAAGTGGACTTCTTCGCTGTGGAACTTCTAGATGGAAATCTCTATCTTCTGCTGGACATGGGATCAGGAACGATTAAAGTCAAAGCCACGCAGAGTAAGGTCAATGATGGAGCCTGGCACCATGTGGACATCCAGAGAGATGGAAGATCAGgAATCATCTCTGTGAACAGCCGTCGAACTCCATTCACAGCCAGTGGAGAGAATGAGATTCTAGACCTGGAGGGTGACCTATATCTCGGAGGTCTGCCAGACAACCGTGTTGGCCTGGTTCTTCCCACTGAACTGTGGACTGCTATGCTAAACTATGGCTATGTGGGGTGCATCCGTGATCTCTTCATAGATGGACGAAGTAAAGACATTCGCCAGATCGCAGAGGCACAGAACGGAGTCGGAATCAAGCCGTCCTGCAGCAAAGTAACAGGCAAACAGTGTGACAGCAACCCTTGCAAAAACAACGGCATTTGCAAAGAGGGCTGGAATCGCTTCATCTGTGAATGCACTGGGACCGGATACTGGGATCGAACCTGTGAGAGAGAGGCATCTGTCCTAAGTTATGACGGCAGTATGTATATGAAAGTGGTGATGCCGACAGTAATACATACAGAGGCAGAGGATGTGTCTTTGCGGTTTATGTCCCAGCGTGCCTTTGGCCTGTTGATGGCTGCCACATCACGTGAGTCCGCAGACACACTACGTCTAGAGCTGGACAGCGGCCGTGTCAAACTGACCGTCAACTTAGACTGTGGCAGGATAAACTGTAACACCAGTAAAGGACCAGAGACATTGTATGCTGGCCAGAAAGTGAATGACAACGACTGGCACTCAGTCAAAGTGATGCGGCGTGGTAAAAATCTCAAACTCATGGTGGACGATGATGTAGCTGAAGGTCAGATGAATGGTGACCACACTCGGCTGGAGTTTAGTAATATCGAGACCGGAATCCTGACAGAACGGCGTTTTGCCTCCACAGCTCCATCCAACTTCATTGGTCACCTGCAAGGCCTGAAGTTTAACGGCCTCCTCTACATTGACATGTGCAAGAACGGGGACATCGAATTCTGTGAGCTCAATGCTCGATTCGGCATGCGTTCCATTGTGGCCGATCCAGTTACCTTCAAGACCAAAGGAAGCTATCTGGGTCTTGCTACACTCCAGGCTTACAGCACCATGCACCTCTTCTTTCAGTTCAAAACTACCTCGGGTGATGGTTTCATTCTCTTCAATAGTGGAgatgggaatgattttattgcCGTGGAGCTTGTCAAAGGGTATATTCACTATGTGTTTGACCTGGGAAATGGACCGAGTCTTCTGAAGGGAAACAGCGACAGTCCTCTTAACGACAACCAGTGGCACAATGTGGTGATCACTCGAGACGCtagcaacacacacacgctaaagGTGGACGCCAAGTCTGTCAGCCAGGTGGTCAATGGAGCAAAAAATCTAGACCTGAAAGGTGATCTGTTTGTAGCCGGTTTGGGACCCAACATGTACCAGAATCTGCCAAAGCTGGTGGTGTCTCGTGAGGGTTTCCAGGGCTGCTTAGCCTCCATGGATCTCAACGGCCGCCTGCCTGACCTCATCAATGATGCTCTGTTTCGCAGTGGGCAGATCGAACGTGGCTGTGAAGTTGGTTTCACCAAAGCTGACCTGCAAGGGCCCAGCACTACATGCCAGGAGGATTCGTGCGCCAACATGGGTGTGTGCATCCAGCAATGGGAGAACTTCACCTGTGACTGCTCCATGACCTCTTACTCTGGCACACAATGCAATGACCCTGGAGCTACATACATCTTTGGAAAGGGCGGCGGACTTATCACATACACATGGCCCAATAACGAGAGGCCCAGCACTAGAACCGATAGACTGGCAGTGGGCTTCAGCACCACTATCAAGGACGGGATTCTGGTCCGCATCGACAGCGCCCCCAGACTAGGAGACTACATCATGCTCCATATTGAAGAAGGAAAGGTGGGCGTAACATTCAATATTGGTACAGTGGACATCAGCGTCAAAGAGCTGACTACAGAAGTCAACGATGGAAAATATCATGTTGTGCGGTTCACAAGGAATGGAGGAAATGCCACCTTACAGGTGGACAACTGGCCAATCAACGAGCATTTTCCATCAGgcAACAGCGACAATGAGCGTTATCAAATGGCTAATAAGAAAATCCCGTTCAAATATACCCGGCCGGTCGAAGATTGGCTACACGAGAAAGGTCGTCAGCTGACCATTTTTAACACCCAAGCCACCATCTCAATAGGCGGTAATGACCGCAAGCGACCATATCAAGGCCAGCTCTCTGGTCTTTATTACAATGGCCTGAAGGTTCTCAACATGGCAGCTGAGGGTCATGCTAACATCAAGATAAATGGTAGTGTGAGACTGGTGGGGGATGTGCCCACCAGCAGAAGTCCCTCACGTACCACCACCTCCATGCCCCCAGAGATGTCTACCACCTTCATTGAGACCACCACCACCCTGTCAACCACCACTACCCGCAAACAGCGTTCACCACCCACCATTCAGACAACAGATGACATTGTGTCCTCTGCAGAATGTTCCAGCGACGACGAGGATCTGGAGGAGTGTGACGGGGGACACACAGCCCAAAGCTCTATTGCCGCCCGACCGCTTCGTACCGCCCTTACATGGACATGGCAACTGACGTACACGTTCACTTCCATCTATGTCATTTCCTACCTAGTCTGTTCATAGGCCTTCCTCttcccctccctctctctctctctctctctctctctctctctctctctctctctctctctctctctctagttcTTTTTCCatacctctttctctcttttgcccCTTCCCTTCTCCTCTTAGCAATGGTACAGTATGTATAGTCATTCAATcatttaaagaatttattttaaaaaagaacaaagaaaatacGTATCTGTAGATACTTCAAAGCAAAATTaacgaaaaaaagaaaatgtacagttttcttttgtagagaaaatgatttatttatcaaaagaaagaacaaatgaGCAGAATGGTGAAGTTATTTTTCATGTCATGGTGTGAATGTATGTGTCGTTGCCTCCCTGTATCATCTTGTCTAcgaaaaaatatgataaaatcagaaaataaattgattgccTAATTAAATCATTAGAGATAACCATACTTATCCCCAAGCATTCTTACACAactttcttaattttttgtaaattttttctTCCTGCCAAAATCATGCGGGCAATTTGTTGATGTAAGTCACAGAACTGATGGAGGGGAGTTAGTTATCCCTGTTCTAGTTGAGGATCCCATAGACACCCCCCCTGTTTCCACTCGAGCCCCTTTCATCCCCCTTCCCCCGACCCTACACCCCGTCCTCACCATTATTGAGACCACCAAAGAGTCCC

Function

GO:

id name namespace
GO:0051965 positive regulation of synapse assembly biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0001525 angiogenesis biological_process
GO:0090129 positive regulation of synapse maturation biological_process
GO:0007155 cell adhesion biological_process
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200591 lncRNA downstream 115490 3120341 ~ 3527057 (-) True G135800
TU200614 lncRNA downstream 255018 3387192 ~ 3387529 (-) True G135819
TU200570 lncRNA downstream 403678 2866794 ~ 3238869 (-) False G135782
TU200569 lncRNA downstream 403678 3237136 ~ 3238869 (-) True G135782
TU200565 lncRNA downstream 411173 2859267 ~ 3231374 (-) True G135781
TU200720 lncRNA upstream 27136 3897202 ~ 3897582 (-) True G135901
TU200727 lncRNA upstream 98697 3968763 ~ 3975258 (-) False LOC122325550
TU200730 lncRNA upstream 119791 3989857 ~ 3990072 (-) True G135910
TU200737 lncRNA upstream 134771 4004837 ~ 4006307 (-) True G135916
TU200739 lncRNA upstream 136489 4006555 ~ 4007352 (-) True G135918
XM_043219486.1 mRNA downstream 95343 3537873 ~ 3547204 (-) True tshr
XM_043219569.1 mRNA downstream 169142 3471994 ~ 3473405 (-) True LOC122324861
XM_043219485.1 mRNA downstream 421998 3196313 ~ 3220549 (-) True LOC122324803
XM_043218724.1 mRNA downstream 463265 3132081 ~ 3179282 (-) True LOC122324357
XM_043218727.1 mRNA downstream 793922 2787139 ~ 2848625 (-) True rev3l
XM_043220591.1 mRNA upstream 98792 3968858 ~ 3975257 (-) False LOC122325550
XM_043220590.1 mRNA upstream 98792 3968858 ~ 3975257 (-) True LOC122325550
XM_043219499.1 mRNA upstream 694290 4564356 ~ 4582097 (-) True LOC122324820
XM_043219068.1 mRNA upstream 798613 4668679 ~ 4674148 (-) False tmem242
XM_043219067.1 mRNA upstream 798613 4668679 ~ 4674148 (-) True tmem242
XR_006247260.1 other downstream 885117 2742776 ~ 2757430 (-) False cep170bb
XR_006247261.1 other downstream 885117 2742781 ~ 2757430 (-) False cep170bb
TU200243 other downstream 1277723 2364053 ~ 2364824 (-) True G135548
unassigned_transcript_2411 other downstream 1477485 2164990 ~ 2165062 (-) True trnaf-gaa_118
unassigned_transcript_2410 other downstream 1477648 2164828 ~ 2164899 (-) True trnaq-cug_70
unassigned_transcript_2442 other upstream 428417 4298483 ~ 4298555 (-) True trnat-ugu_51
unassigned_transcript_2443 other upstream 579317 4449383 ~ 4449455 (-) True trnat-ugu_52
TU200901 other upstream 694319 4564385 ~ 4573002 (-) False LOC122324820
TU201127 other upstream 1141410 5011476 ~ 5012441 (-) False si:ch73-111k22.3
TU201117 other upstream 1154740 5024806 ~ 5029532 (-) False selenol

Expression Profile