RNA id: XM_043219692.1


Basic Information

Item Value
RNA id XM_043219692.1
length 3015
RNA type mRNA
GC content 0.43
exon number 4
gene id opn8b
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 22541777 ~ 22552274 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCCTTCTGTTGTTAAGGTTTTTCATGAAATCGCGCCGGACATCAGATGTCGCTGACACCTGACGGCAGGATCAGCTATACCTTCTCGCTCCGGTGGAATTTCACGGCGCGCGCCTCAATTTTCTCCAACTTTTTCCAAATCGCACCGATGTCGAGCGCGTCTCCTTCTGGGAATTAACATCGCCTCGTCTCCTCCGAAGAGCACATCTCACTTGTCCACATGGATGTTTATTCCTCTAAACTGTCGACAGCTGTGGATTATGGAGTTGGCGCGTTCCTGTTGCTCATTGCAATTCTTTCCATTGTGGGGAATTTTATGGTTCTTGTGATGGCGTACAAGAGGTCAAACCACATGAAACCCCCTGAGCTTCTGAGTGTGAATCTTGCCGTGACGGATCTGGGTGCCGCCGTCACCATGTACCCACTGGCTGTAGCCTCAGCATGGAACCACCACTGGATAGGAGGAGATGTCACCTGCGTGTACTATGGCCTGATGGGATTTTTCTTCGGAGCAGCTAGCATGATGACCCTGACAATTATGGCCGTTGTTCGTTTCATTGTGTCTTTAACGCTCCAGTCACCAAAAGAGAAAATGAGCAAAAGGAATGCAAAGATCCTCGTGGCGACCACGTGGCTGTATGCACTTCTCTGGGCTATTTTTCCTTTGATTGGCTGGGGAAAATACGGCCCGGAGTCCTTTGGCCTGTCCTGTACTCTGGCCTGGAGAGACATGAAGGAACAGAGCCAGTCTTTTGTCATCACCATTTTCCTCATGAACCTCATCCTCCcagccatcatcatcatctcatgCTACTCCGCTATTGCTCTGAAACTGTACATCACCTACAAGTCAATGAATGACAACAACCACATCCCCAGCATGATAAAGACGCAGCGCCGGCTCATGTTGATCGCTGTGTTAATCAGCATTGGGTTTGTTGGCTGCTGGGCGCCTTACGGCATCGTCAGCCTGTGGTCCGTCTACCGCCCCGGTGACTCCATCCCTCCAGAGGTCAGCATGTTACCCTGTCTGTTCGCCAAGTCATCCACTGTATACAACCCGTTCATCTACTATATCTTCAGCAAGACCTTTAAGCAAGAAGTCAAACAGTTGGGCCGCTTCTGCGGGAGATCCAACATCTGCCCTACTTCTGAGGCCAAAAAAGGACCAGAGAACACCATCTACCTGATGTGCGATGCAAACAAGTCCAAAGTCGGAGCAGAGGAACAAACAGAGAAGAGCAGGGAGAATGAGACTCAAATGATGCCAAATCAGTTGGACATGTGAGAAAAGAATAGTATTTTTGTGCGATGTTATCAGATGCAGATTCAGTGCACCGCTTCGGCGCTGTAACACACTGATCTTTGTTCAAAGGGACCACTCAGAATGAAATTTTTGTCATCattaatgtcattccaaacctgtatggttttttttttcttctggggATGTTGAGAGAAGAGATATTGCGCGTCTGTTTAAGCTTAGGTCTTTTTATTGGGTGCGCGGTGATTTATTGTCCCAAACTCCGTAACAGCCAAACCGTTATTGTTATCGTTTTATTTGAAGGATTTTTTCTGAGTACGGCACAGAACGAACGAACTATGTTTTAGACTTcacatacagaaaaataaataataataaatatttttttttattaaaatagcagAAGAAACAATGACCCATGCAGTATACCGCAAGTCGTCTTAGTTATATGATAGCGTTAAGTTACATGATAGGCgcaatttatgtaatttaatatttcctAAGCTGTCAAATCTCATTTGCAGTCGTtttcttcaaaatgaaaaaaaaaatggtttcaagTGTTTTTATGAAGGTACTGTAAATGAAATTTGTGCGTGTACTACTATTGTATTTTGTACTTGCTAGTATTATTGTGAATGTTTACCAATAATTAATTAGACTTACCTTCcattttatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaaatttaGCACTAGCGTAATGTCATTCATAATCACAATTTTcctatttataattttgcatgTCATTCATGCGATCTGGATTATTATCTCCACGTACATGTGtttcaaatttagttttcatGGAAAAAACAAAGTCAGGTTTGGGACAACATGAaagggagtaaatgatgacataattttcattttcaggtgaactattcctgaaCTTCTTCCTAGACTTACAATAGCCCCCCCGGTTTGTCTGCGTCATCCCGATTTTTGCCATGTTAAATGAAACCGTGTTACTTTTAAATGGTTCGATTGATTCCGCTGGCGAGTGAATGTGTTTTCGAAGTTTTGAAAGCTGTCCAGACGTTGCGCAACTCAGCCATCctcaggaaagaaaaaaaaaaagtccagccAAAGGACATGTGGATGCTTTGACGAGTGTTGTGTTCTTTTACTTTTACAATGACCCCACTGCGGCCGTAACACTTAACCAGGTCTTTTGGGACTGCAGTCATTCATCTCGCCGGTGGAAAGAACGCTTTGCTGAAGAATCTGCAGGTTGTTTCCAACCACTGATGAGAGCGCTGCACTGGTTCGTCCTGCAGGGTTTTTGATATCCACGAAGCACGTGATATCCCGTTGCGAAAAGACCTTTTTGTTCTGTtcaaaaaatgaatggaaactGTAAAAAACGTACTAATTATAGGTATACGTTTGAGCAAAATCAACAATGTTGCTGTATTCTATTAGCTACGTCCAATAtttctcttaaaataaaaatgttgaataaatgtgAACGTGCCGATTCCAATCTTGCTGATGCCAGTCCCCTCTAGGTCTTCGTCTGAGCACTGGACTACGTGGCAGGAAAATTCTTCGACATTTTTATTGGGTCGTTGGATGCAAAATTCAGctgagctcattagcatttaaagcaacgtGAACTAGAATggctgattttgacagggtaaaaGAAGGTGTTTTTTACACTACCACAGAGAAATCTTAACCAAAGTATgtttccaccactgaataaaaatgtaaaattgcgA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208238 lncRNA downstream 83 22541463 ~ 22541694 (-) True G141083
TU208237 lncRNA downstream 627 22540688 ~ 22541150 (-) True G141082
TU208235 lncRNA downstream 1450 22539920 ~ 22540327 (-) True G141080
TU208234 lncRNA downstream 1863 22539593 ~ 22539914 (-) True G141079
TU208233 lncRNA downstream 2210 22539367 ~ 22539567 (-) True G141078
TU208473 lncRNA upstream 108341 22660615 ~ 22662241 (-) True G141255
TU208522 lncRNA upstream 187367 22739641 ~ 22740927 (-) True G141283
TU208585 lncRNA upstream 278640 22830914 ~ 22831421 (-) True G141307
TU208599 lncRNA upstream 326458 22878732 ~ 22890133 (-) True G141319
TU208601 lncRNA upstream 331788 22884062 ~ 22890133 (-) False G141319
XM_043219741.1 mRNA downstream 35975 22498745 ~ 22505802 (-) False LOC122324950
XM_043219740.1 mRNA downstream 35975 22498745 ~ 22505802 (-) True LOC122324950
XM_043219319.1 mRNA downstream 71507 22394835 ~ 22470270 (-) False atad2b
XM_043219318.1 mRNA downstream 71507 22394835 ~ 22470270 (-) True atad2b
XM_043219320.1 mRNA downstream 71507 22404012 ~ 22470270 (-) False atad2b
XM_043220550.1 mRNA upstream 5230 22557504 ~ 22567131 (-) True opn8a
XM_043219919.1 mRNA upstream 117768 22670042 ~ 22683646 (-) True clic5b
XM_043218592.1 mRNA upstream 217645 22769919 ~ 22776432 (-) True lin9
XM_043220475.1 mRNA upstream 224847 22777121 ~ 22791942 (-) True parp1
XM_043219706.1 mRNA upstream 240963 22793237 ~ 22802967 (-) True si:dkey-206f10.1
unassigned_transcript_2512 other downstream 425988 22115707 ~ 22115789 (-) True trnal-uaa_37
unassigned_transcript_2511 other downstream 426657 22115038 ~ 22115120 (-) True trnal-uaa_36
TU208103 other downstream 428733 22112602 ~ 22113044 (-) True G140972
TU207994 other downstream 694860 21845806 ~ 21846917 (-) False LOC122325102
TU207987 other downstream 700309 21841113 ~ 21841468 (-) True G140883
XR_006247154.1 other upstream 836895 23389169 ~ 23401391 (-) False mcm9
XR_006247155.1 other upstream 838191 23390465 ~ 23401391 (-) False mcm9
XR_006247156.1 other upstream 838193 23390467 ~ 23401391 (-) False mcm9
XR_006247216.1 other upstream 1239803 23792077 ~ 23823050 (-) False tbc1d32
TU208856 other upstream 1452413 24004687 ~ 24006665 (-) True G141502

Expression Profile