RNA id: XM_043219695.1


Basic Information

Item Value
RNA id XM_043219695.1
length 1840
RNA type mRNA
GC content 0.49
exon number 13
gene id brox
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 24682627 ~ 24691089 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTCACCGCCCGACGTACGTCATACCGGAAGAGCGTTCATTGTTTTGGCGTTTCCTGATCCACATCTCCGGAGTCTCTCcgactaaaacaacaaaacatctgGCAGTCGACACGTTTCTGGCGTCCTCTCACCATGACTCACTGGTTCCATCGAAACCCTCTGAAAGCCACAGCGCCTGTGTCCTTTAACCTCTACGGCGTGGCATCCAGTCCCGCGGCCAATAAGATCTGCAATGACTTGAGAACGACTCGTGCCCGGCTGCTGGACATGTTCACCGATGCCACATGTACCCCAGAGATCATGAAGAAATCCAGTGATGAATACTTCGCTCTATTACAGGgATTCATTTTGCCGCTGGATGGAACCACACAAGAGAACAAGCTCCGGTTCATCCAGAACTTCAAATGGACCGACACTTTACAGGGAAATACTGCAAGCGCCCAGCAGGATGCGGTTTTTGAGCTGGTGTCTATGGCCTTTAATGTGGCCGTCTGGTACACCAAGTTTGCCTCACGACTGGCCGGAAAGGAGAATATCACAGAAGATGAGGCCAAAGATGTTCACAAGAGTTTGAAAATCGCCGCCGGACTTTTTAAAACCCTTAAGGAGACTCATATTCCTCGGCTCATCACTCCAGCAGAGAAGGGACGAGACCTGGAGCCGCGAGTCATTGACACCTACATCGTGCAGAGTCAGGCAGAGGCTCAGGAGGTCACCATTGCCAGAGCCATCGAGCTGAAGCACAATGCCTCCCTCATCGCAGCGCTGTCATTTGAGACCGCTAACTTCTACCAGAAGGCCGATCACACTCTGAACACTTTGGATCCAGAATGCAGCAGTAAATGGAAGAAATACCTGCAGCTGAAGCAGCACTTCTACATGGCTTACGCACACTGCTATCATGGACAGACTCTTCTCGCTGGCGATAAATGCGGAGAGGCCATAAGATCCCTGCAGGAGGCTGAGAAATTTTATTCCCGCGCTGAAGCCTTGTGTAAAGAGTACCGTCAGATGAAGGGTCCCGGCAGCACGGCCAAACCCTCGGAGCAGCTCTTCTTTAAGAAGCTGGGCACGTTCATCAAAAACACCCTGGAGAAGTGCCAGAGAGAGAACGGCTTCATTTACTTCCACAAGGTTCCCGCCGAAGCTCCGGCGCTGGAACTGAAGGCCAGTTACGGTTTGGCTGAACCCACTCCCTTCGAGCTCCCGCCTCTCTGCGCCCAGTGCTCGCCCGAAGTCTACGCCAGCTTTGACCTCACCAAAGGACCCAAAGAAGACAAGGCAAAAGCGAAGCACGACGAGGAGATCAAGCCGGTGAAGGAGCCGGATCTGAAGCCTCAGAAGGACACGGGCTGCGTCGTCTCTTAAAGTCCGGCTCAAGCGGCGGCAGACAGGTGAAGCATGATGTCCAGGAGATCTGGAGGAGTCTGGAGTCTTCTCTCGTGTTATTCTCTCCCCCGATCAAATATATACCAATATAACATAGTGATATAACAGTGGCGTCTGTCTCGTGCTCGGATTCTGTTTAAGGTGTTTCGTCTGCAAGCGACAGATGTTCTAATGAAGGACTGTACGACTAAAATATGACCAACAGTTAATCCTAGTAACCCAGACCCAATCGTTTCTCTGTAGCGAAATGACCCTGGTGAGATTTTTAAGGTTTATCGGGTCCATTGATTGGAGAATAACTTATATAGATCTCTAAATTCGtccttattgtttttttttaaacgatgtTCAGACAATTAACTCTTATTTAAATAATCCATTGATTAGTGCAAATGTTAAACTGCATCTAAACTAGTTGAATTTCcgaataaaatacaaatctcaCCCCAA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209133 lncRNA downstream 65980 24611866 ~ 24616647 (-) True LOC122325459
XR_006247301.1 lncRNA downstream 66217 24614271 ~ 24616410 (-) False LOC122325459
TU209088 lncRNA downstream 137078 24545016 ~ 24545549 (-) True G141624
TU209086 lncRNA downstream 158796 24522383 ~ 24523831 (-) True G141622
TU209098 lncRNA downstream 160416 24521977 ~ 24522211 (-) True G141634
TU209141 lncRNA upstream 913 24692002 ~ 24692486 (-) True G141662
TU209121 lncRNA upstream 33853 24724942 ~ 24726684 (-) True G141648
TU209124 lncRNA upstream 35972 24727061 ~ 24727733 (-) True G141650
TU209158 lncRNA upstream 85526 24776615 ~ 24776863 (-) True G141676
TU209170 lncRNA upstream 97583 24788672 ~ 24788904 (-) True G141679
XM_043219698.1 mRNA downstream 153 24678486 ~ 24682474 (-) True LOC122324924
XM_043219699.1 mRNA downstream 5003 24674210 ~ 24677624 (-) True LOC122324925
XM_043220506.1 mRNA downstream 9565 24620458 ~ 24673062 (-) False disp1
XM_043220504.1 mRNA downstream 36271 24620458 ~ 24646356 (-) True disp1
XM_043220505.1 mRNA downstream 38469 24620458 ~ 24644158 (-) False disp1
XM_043220220.1 mRNA upstream 8083 24699172 ~ 24721106 (-) True mia3
XM_043218598.1 mRNA upstream 138760 24829849 ~ 24832990 (-) True hlx1
XM_043220390.1 mRNA upstream 147563 24838652 ~ 24851779 (-) True rhpn1
XM_043220235.1 mRNA upstream 161380 24852469 ~ 24861840 (-) True naprt
XM_043220236.1 mRNA upstream 174370 24865459 ~ 24867178 (-) True c20h8orf82
TU209125 other downstream 35206 24571413 ~ 24647421 (-) True G141651
TU209099 other downstream 151752 24525882 ~ 24530875 (-) False slc35b2
TU209065 other downstream 421591 24257786 ~ 24261036 (-) False LOC122324315
TU208856 other downstream 675962 24004687 ~ 24006665 (-) True G141502
XR_006247216.1 other downstream 859577 23792077 ~ 23823050 (-) False tbc1d32
TU209178 other upstream 156576 24847665 ~ 24851761 (-) False rhpn1
TU209665 other upstream 637491 25328580 ~ 25329605 (-) False wasf1
TU209701 other upstream 639837 25330926 ~ 25377416 (-) False wasf1
TU209689 other upstream 702031 25393120 ~ 25407942 (-) False mettl24
TU209680 other upstream 705119 25396208 ~ 25407942 (-) False mettl24

Expression Profile