RNA id: XM_043219711.1


Basic Information

Item Value
RNA id XM_043219711.1
length 5664
RNA type mRNA
GC content 0.42
exon number 24
gene id efr3bb
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 22807159 ~ 22839446 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCAGAGGAAGTGTGTGAGTCtgaatcactgtgtgtgtggagggacCGTCACTCACAGAAGAAGTAGTGAGTGAGCACGAGTCAgttatcatgtttattttggCTCGCTGACGGAGCATGAGAGCACAATTTACCAGACTATGCAGCTGAAAACAAGCGCGGTAGGCCCCACACCATCCTGCGGCTTTCCTACTGTGAGTGAGCGGGAAAGAGCGTCCTAGTTCGGCGTGAAGTCCAGCGTTGGACCGCTGGACGCCGGTGCTCCGTAGTATCCGATTGAGTGCAAGAGCGACATCTGGCGTAAAAAGCCATCATGACAGGGGTGTGTGGTTGTTGCGGAGCGCTGAGGCCGCGCTACAAGAGACTGGTGGACAACATCTTCCCTGAAGACCCAGAGgaTGGGTTGGTAAAGGCCAACATGGAGAAGCTGACTTTTTATGCCCTGTCAGCTCCAGAGAAATTGGACCGAATCGGGGCCTACCTGTCTGAGAGATTGTCTCGTGACGTAGCTAGACACCGTTATGGGTATGTGTGTATTGCAATGGAAGCCCTCGACCAGCTGCTAATGGCCTGTCACTGTCAGAGCATCAACCTGTTCGTGGAGAGTTTTCTAAAGATGGTGAGAAAACTCCTGGAGGCCGACAAACCCAACCTGCAAATCCTGGGAACAAACTCGTTTGTGAAGTTTGCTAACATCGAGGAGGACACCCCTTCATATCATCGCAGTTACGATTTCTTTGTGTCGCGGTTTAGCGAGATGTGCCATTCCAACTATGAGGACCCCGACATACGGACTAAAATCCGAATGGCTGGCATCAAAGGTCTACAGGGAGTAGTGAGGAAGACTGTAAACGATGAGTTACAGGCAAACATCTGGGACCCTCAGCACATGGACAAGATCGTCCCCTCACTGCTCTTCAATCTGCAGTCTGGTGAAGGTACAGAGAGTCGCTCTCCCTTCCCGCTGCAGGCCagtgagaaggagagagaaagccCGGCCGAGCTGACGGAGCGCTGCTTTCGGGAACTGCTGGGCCGTGCTGCCTATGGCAACATCAAGAACGCAGTCACCCCTGTGCTTATGCATCTTGATAATCACTCGCTGTGGGAAGGCAAAACATTTGCAGTGCGCTGCTTTAAGATCATCATGTACTCCATTCAGTCCCAGCATTCTCATCTGGTCATCCAGCAGCTCTTGGGCCATTTGGATGCCAACAGTAAGAGCTCTGCCACAGTGCGTGCTGGGATAGTGGAGGTCCTTCTGGAGGCTGCTGCCATCGCTGCCAGTGGCTCTGTTGgcCCCACAGTGTTAGAGGTTTTCAACACGTTGCTCCGGCATCTGAGGCTCAGTGTGGACTATGAGCTCACAGGATCCTACGACTGCACTAACATCGGCACCAAAATCATCAAGGAGCACGAGGAGAGACAGCTACAGGAAGCTGTCATCAAGActattggctCATTTGCAAACACATTACCCACGTACCAGCGTTCTGAGGTGATGCTCTTCATCATGGGAAAAATCCCCATTCCAGGCATGCACCCCACACTGCCCTCTACAGGCTCAGGACCTGAGGGCAACCGAATGATCCAGGTTATGCTGTTGAAGTCCTTGAGACAGgTCACATGTGGTTTCCAGACTACTAACATGCTGACAGCTCTTCCCAACTCATTTCTGGACCCACTGCTGTCATTTGCTCTGCTAGAAGATGCAGAAATTCGACTCTTGGTGCTGGAAATACTGGTCAGCCTTATTGATCGCCATGACAACCTCCCCAAGTTCTCCACCATCAGTATCATCTCTGATATCTCTGTTCTTAAACTCAAAGTGGACAAGTGCTCACGTCAAGACAACCTCTTCATGAAAAAGCATGCCCAGCACCTGTATAGACACATCTACCTGTGCAGTAAGGAACAGAGCAGTGTGCAGCCTCATTTTGAGAAGCTCTACTCACTCCTGGCCCTCATCAGCATGGAGCTGGCCAATGAAGAGGTGGTGGTGGACCTGATCCGTGTAGCGCTCGCTCTGCAGGACTTGGCTCTGAGCAGTGAGGAGCTGTTACCGGTGTATAACCGCTGTGCTGTTCACGCTCTGTCCTCTGCTTACCTCAATCTCATCAGTCAGCTCACCACAGTGCCAGCGTTCTGCCAGCACGTTCACGAGGTGATTGAAATGAGACAAAAAGAAAGTCCCTACCTGTTACCTGAGGATATCTTCATTGAAAACCCAAAGATTCCCAAGACACTGGAGAAGCTGGAAGGAGAACTGTTGTTTCAACAGGCCAAGATAACTGAGGTTCTTGGAGGAAGCGGCTACAACACTGAGCGACTAGCTACACCTTATATCCCACAGTTCACAGATGAGGACCGGCTGTCGAAAAGAAAGAGCGTTGGAGAAACAATATCTCTGCAGGTGGAGGTAGAGTCCAGAAACAGTCCAGAGAAAGAGGAgAGAACACCAGCTGAAGAAATCACATTTGAAACACTAAAGAACGCCATCGTGGACAGCGTAGGCGTGGAGGAACAGGAGAAGGAACGCAGGAGACAGGTGGTTGAGAAGTTCCAGAAGGCCCCCTTTGAGGAAATAGCTGCCCACTGTGGTGCCAGAGCTACGATGTTGCAGAGCAAACTTAATCAAATCTTCGAAATCACGATCAGGCCTCCTCCCAGTCCATCTGGAACCATCACATCAAGTTACGGCCAAACCCAGAGTCGCTCTGTCCCCATTTATGAGATGAAGTTCCCGGACTTGTGCGTTTACTAGTGCAGCTCAACTCAGGATTCAGGAACCTTCGGTAGCAGCCAGTGGTGAAGAGAGCTGGAGGgttttaagtattaaattatattttgatgttttttaataCAGGAAATCTAAGAGGTCAGCCCTCCTCTATACTATAAACCTGATCGCTGTATTATCCCCTGTTCTGCAAGGTAAAAGTTCACCATTGAACTACTGCTGAAACGATTTTGATCGTTTGGATTCCTGATTTAGGTTCAGTGCACAGAGCTTTCCCTACTTAGAAATATTTTCTCACGTATTCTTTGATACTCTGAACTTCCATAATAAAATCAGctaacataaatgtatatttgcagCAAACCAAATCCAAATAAGCAGAGCGCATATTTCACCCTTAAAgtctaaagaaagaaataatatatattttaaataaacaacctTTTGCTAACTTCcaagtaaaatagttttttttttctacattgtgacattattttcatgacagtcaaacacatttaatgtgaaaataaaaatatttaaattgtgaattattattatttctttaattagtaAAGAGCTTATTGTAATGCTGATTTCCCTTAAAAACCATTGCATTACAGTTGTTTATCGTAACATAATAAAACTGTAACTGCAAATTGCAAAATTaactcattaaataaaaaaaaacgcattacaGTGTTAAGACTCTGCGGATAGTTTTGAGTTggcattaaaaaattatgtgaTAATGTCATAAACGTAACgctcttaaaaaataatttgaccaTATTTCTGTTAAGATTCACCTTTTATTCTGGAGTTTCAAAGTTGTATATTGAGGAAAAAGGGCAAACTGTCATCTCATTTTGACAAATCAAACAATTTAACCTAAGTGCAATCGGTATCAATGAAGCTCATTTGTCTCAAATGATTTTTACTTGGTGCTAATTTCTTTTCCTAGTACTTTGAGTCTAGCAAATTAGCTTTTTAGTATAGTTTGTTTATAACAGCAGTCAGCGTTCTGTAGATATGTGCCGTTCAGATCTTCTGCTCGTGTTTACTTGCTAAGCACAGTTGTGGTGTTAAGGAGCTCTGGTGCTGAAGGAGCTATTTAATTAGCACTTTTGTCTTATTTATCTAACCATAGTCATTTGCTTAGTATCTGTAGCCTGCTACGTTGTGCTTCTTTTTGAGTGCTTCcgcctttttttgtttttttataagcacaagcatcatttttatatgtgtgtttgtgtgtgtgtgtatataaggaccagatctataaatatatgtaaataaccGTTTTAGATTGCTCTGGTTTAGCTCAGTGTGTGCATTTCCCAATGAAGAACTAAGCAGCATGCTGGCTCCGTTTTAAGAGTTTGCAAAACTCATAATagctgatttgtttttgtgatggACTGCTAGCTTCGGGGGTCAGAGACGGTCCATCAGGAACGGCAGCACACTCCCcgtcaaactttttttttttttttttttttttttttttttttttttttttgtcatttgaattACATGATGCTCTACAAATATTTCAGATCATGCAAAGACTGGGATTTCACTGCTGATCTGTGTCTTTAAATACAGAATATTTAAAGGATGATATACAGCCAGGGGTTTATTTCGCATTTTTCATTATCCTGCTTAGCACACACAACTGCtttccaaataaataacatttatcacCTTTATTATTAACTTATCACTCTTATGTTGAAATCATCACCTTATTTGTTGATTACTTGTTTAAATGCTAAGAGAAATAGAACATGGAAAACAGTCCGCATATAGCAAGCCGTGCAACgttacaatattaattattttatttttaatctgcaaTCCAAGTTACTTTTAGTCACTTAGTTAGCTAACATATTTACCAAGTCTTCcacaattttaatttctgtcTCAAGTTCATTGTTCTTCcagtttttagttgtttttttttaattaaacttgaGGCTCCTGAGCCACCTTCTgtcaaatattttagaaaaagcaatttaaaagaaaacccCTTTCGTGGTCAAATAGAGAGATTTAGTGCATTATGCAAAATTGCATCAGTTGGCCAATAGTCAAGAACCTATTTTAGAGACCTGCTAATgaattaagaataataattatatattttttcatcatttgaTGGAGAAATCCAAGCCTTTTTTCTTTGGTGTAAATTGTGAGAGATGTTTTTTAATGTCCAGCTAATATGTTGTAGTCCtatgggggttttttttgtggtgaatgtttttgtatggctgtggttttttttacagtgccaTGAACAGAACTGCTGTGCTTTTATTAGAAGATTCATGCAACTATTATTTATGTCATCAGTTGGTGACTGCATACGGTATATGGTTTCTGtgttactttaaatgtttttttaagactAAAAGTATGACAGCGgatttcataaatattcatttgtattaCACAGACAGAGCATAGATATTATAGAGATCCAATGAAAATGTCCAGATAACTAAACAGTAAATGCTATAATGCCTGTAGTCAGTAGTGTCTTTATCACAGAAGTAGTAGACCGTTGCTGTTCtcagtattattagtattaaatgcatttgctatttaaatataattatgctTTTGAAACGAATCTGAAGTATTAATCTTGCCCCGATAATGACTCGTATAAATGCTCAGTAGTTTTGTAAAACGCATCTCGCATTTCTTcagcattttaatgtttgcGGAAATTAATTCGATTAATTGTCAAATTAGGCATTAATTATAACCTTGCTGCAATTCAAGTGTCATTCAAGCTTTTTTCACGTGTAGCGTTAATGAAATCTCAGTCACCGTATTCTGTCTGGATGGAGGTTTTCCCCATGATTTGTTTGTAAACTGCAAAtagagaataaaacattttcgaTACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208266 lncRNA upstream 61373 22745420 ~ 22745786 (+) False matn3a
TU208246 lncRNA upstream 249657 22557229 ~ 22557502 (+) True G141091
TU208239 lncRNA upstream 264627 22542136 ~ 22542532 (+) True G141084
TU208236 lncRNA upstream 265832 22541118 ~ 22541327 (+) True G141081
TU208104 lncRNA upstream 692292 22114395 ~ 22114867 (+) False LOC122324401
TU208271 lncRNA downstream 19543 22858989 ~ 22860327 (+) False si:ch211-203k16.3
TU208287 lncRNA downstream 81247 22920693 ~ 22923128 (+) True G141121
TU208355 lncRNA downstream 227141 23066587 ~ 23073665 (+) True G141168
XR_006247220.1 lncRNA downstream 355175 23194621 ~ 23206082 (+) False LOC122324747
XR_006247221.1 lncRNA downstream 355175 23194621 ~ 23206082 (+) False LOC122324747
XM_043220476.1 mRNA upstream 18023 22787465 ~ 22789136 (+) True LOC122325427
XM_043218594.1 mRNA upstream 37283 22767835 ~ 22769876 (+) True mixl1
XM_043218593.1 mRNA upstream 37285 22767837 ~ 22769874 (+) False mixl1
XM_043220501.1 mRNA upstream 43280 22758359 ~ 22763879 (+) True zpax1
XM_043220502.1 mRNA upstream 49180 22755992 ~ 22757979 (+) True ttc32
XM_043219253.1 mRNA downstream 3359 22842805 ~ 22859209 (+) True si:ch211-203k16.3
XM_043219254.1 mRNA downstream 7894 22847340 ~ 22859209 (+) False si:ch211-203k16.3
XM_043220169.1 mRNA downstream 39304 22878750 ~ 22882976 (+) True LOC122325208
XM_043220168.1 mRNA downstream 44661 22884107 ~ 22888671 (+) False LOC122325206
XM_043220167.1 mRNA downstream 44662 22884108 ~ 22888671 (+) True LOC122325206
TU208163 other upstream 289484 22506767 ~ 22517675 (+) False fkbp1b
XR_006247241.1 other upstream 330385 22471786 ~ 22476774 (+) False ubxn2a
TU207855 other upstream 962458 21844146 ~ 21844701 (+) True G140785
XR_006247231.1 other upstream 1608540 21168775 ~ 21198619 (+) False ipo13b
XR_006247313.1 other upstream 1667361 21139684 ~ 21139798 (+) True LOC122325571
unassigned_transcript_2513 other downstream 260760 23100206 ~ 23100288 (+) True trnal-cag_35
TU208810 other downstream 1233425 24072871 ~ 24074423 (+) False G141475
TU208811 other downstream 1233425 24072871 ~ 24074423 (+) False G141475
TU208812 other downstream 1233425 24072871 ~ 24074423 (+) True G141475
TU208889 other downstream 1600797 24440243 ~ 24493381 (+) True G141524

Expression Profile