RNA id: XM_043219717.1


Basic Information

Item Value
RNA id XM_043219717.1
length 2089
RNA type mRNA
GC content 0.45
exon number 15
gene id zgc:152816
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 27387290 ~ 27404395 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TACTGTTAGCTGGAGGCAacgGGATTTTTGGAGTTTAGTTCTCACAAGGAGGCCCAGAATATGGTCAATCATTTCCAGTTGAAACCGGCCTTCATAAAGGAGAACCCAACTATCCTCTACTTATCACCAACAGTGGAAGGCATTTATACACCACCCAAGTTTGATGTGCCTTCACCAAAACGAACAAAACGTTCAAATGCGCCTTCAGTGGTTTGTTTTTCACGCTTGCCTCCGGGGGAGGGCGTGGAGGCTGAAGTACTGGAGCTTGCAGGCATGTTTGGTGAGGTGTGGCAGTCAAAGTTCATGGACTGTAAGgCCTTGATTGAGATGGTTGACTGGCGCGATGCTGACATCATGGTGAAGTATTACCACAGTAACCCACTGAGGATTCAGGGCAAAAGTGTTAAAGTGTCTATGTCACACATCACAACCCTGAGagaAAACAGTCCAGAGTCTTTGACCAGAAAATCTGACTCAAGCAAGCACAGTAGACAAAGAGAAGAGTCTACATCTAGCAACAAGGACAAAAGTGACGGCTCAAACCAGGAAGCCACAGAGAAAGAAGACTTGATGGAAAGTAAAGACAAGGTTCTCGACGATGTGGAGGGAATTCAGCTGGAGGATGAACCTGGGCTGCTTGATGAGGGGTCAGGAGGCATTGTGGGTAAAactgaagagaaagaaaaaaaggaagaggaggaaaagaTGGAAGAGGAGAAACCTACCACTGGTGAggaggagaacagagagagatgtTCAGAGCAGAATCAGGAGGAAGAGGGTGATTTGGATGATTCAGAATTTCCAGAGAACATAGAAGATTTTGTTACATTAGATGAGCTGGACAACAATGCTGGAGattCCTCTGTGCCGAAGGATAGTAAAGTAGTGGTGGTGTGGCCTGTAAAGAAGACCCCTGACTTGATGAAGGATCTTTACAATCTGTATGCACCCTTTGGTATCATGGTGAAGCATTCTTTATCTTCGTTCAAGCAAGAGGCTATGATCGAACTGGAAACAGCTGAAAAGGCCCAGGAAATGGTGCAGTTCTACAGCAATCACAAGGCAACGATATGTGGCAGGCCGGTGTCTGTTTCCATGTGCCTTACCATGAAAGCAATAGAGAGCCCTAGTGGAAGGtctgttttcatcagctgtctTCCCAACCAGAGGTACCAACGCCAGAAATACACAGACAAATCCCTCTTTAAACTAACTAAACCTTTTGGAAAACTGACGGGCTACTCTTTGCACAGGTATCAAGGAACGTGTTACATGCAGCTGGAAAGTACAAAGGCAGCTGAAAAGATGGTTGCGCAGTACAATCGGAGGCCTTGCAAATTCTGGGGGTCGGTGCTGAAGATAGCTATGTGCAGGAAAGGGGATTCTCTGATTCGCTGGAGATACCCCGAGAATGCAGAGGAAAGAGAgttaaaaacaaaggaaatgaAACCAAGCACTGAAAGAACAGAAAATGACCAGCCTATCAAGACTGGAGCAAAGGAGAACCAGCGCGGTTCTTTACCGGATTGTGAAGGTGTTGGTGGGGATCCAGTCTGTGAAAGTAAAGGTTCAGAAGAGGATAGTCAGCTGGACAAAACCCCTCTGAACCCCTATCAACCAGACCAAACTGTGGGTGTGAACTACGTCATCCCAGTCACTGGTTACTTTTGCAAGCTGTGTAACATATTCTACACAGACGAGAAGAAAGCAAGATCAGAGCACTGCCGCAGCCTTGAACACTACAACAACCTCAAGCTTAAACGCGCTGAAGTGGTGGAAGAGGCAGATGGACACCCAGATGGCTGAGTGAAAGAACACAAAGACGACAGCGACATTGTACTTTTGAtccattgttttttatttgttttcattccaGCTAGTTTCTATATTCTTTCcgttcaaatgttttgtttttcaacgTGTCAcaagagtgagtgagtgtgtgtgagagaggcaAAATTGTGAAGCCATTGTGATGGTTTGGATGTTGAACAGTAAGCAGAACGAACACGTATATCAGCTGATGGAGAACGTTACACTGAGCTCTTGAAATAAACTcgcgtttgtttgtttactgtcACTTGTA

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210596 lncRNA downstream 9763 27375209 ~ 27377527 (-) True G142540
TU210583 lncRNA downstream 53574 27333297 ~ 27333716 (-) True G142529
TU210565 lncRNA downstream 88414 27215632 ~ 27298876 (-) True G142515
TU210652 lncRNA upstream 44491 27446476 ~ 27451221 (-) True G142586
TU210680 lncRNA upstream 52708 27454693 ~ 27454892 (-) True G142606
TU210660 lncRNA upstream 69799 27471784 ~ 27474801 (-) True G142590
TU210693 lncRNA upstream 73625 27475610 ~ 27476044 (-) True G142614
TU210694 lncRNA upstream 74109 27476094 ~ 27477776 (-) False tex55
XM_043220003.1 mRNA downstream 48191 27336495 ~ 27339099 (-) False mtif3
XM_043220005.1 mRNA downstream 48203 27336495 ~ 27339087 (-) True mtif3
XM_043220004.1 mRNA downstream 48208 27336495 ~ 27339082 (-) False mtif3
XM_043220349.1 mRNA downstream 129808 27230659 ~ 27257482 (-) True LOC122325335
XM_043220045.1 mRNA downstream 239245 27146476 ~ 27148045 (-) True LOC122325133
XM_043218750.1 mRNA upstream 7517 27409502 ~ 27418420 (-) True zgc:175280
XM_043219811.1 mRNA upstream 74115 27476100 ~ 27478227 (-) True tex55
XM_043220385.1 mRNA upstream 171878 27573863 ~ 27577372 (-) True LOC122325363
XM_043219944.1 mRNA upstream 183646 27585631 ~ 27602190 (-) True LOC122325076
TU210568 other downstream 131032 27229803 ~ 27256258 (-) False LOC122325335
TU210476 other downstream 462303 26922815 ~ 26924987 (-) True G142444
unassigned_transcript_2516 other downstream 772560 26614643 ~ 26614730 (-) True trnas-gcu_32
TU210168 other downstream 1153045 26232024 ~ 26234245 (-) True G142278
TU210175 other downstream 1199371 26185660 ~ 26187919 (-) True G142281

Expression Profile