RNA id: XM_043219740.1


Basic Information

Item Value
RNA id XM_043219740.1
length 3012
RNA type mRNA
GC content 0.48
exon number 4
gene id LOC122324950
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 22498745 ~ 22505802 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCATGACTTCAAATGTCTCCGCGGGGCAATGCCCAGTTAATGTTTCGCTATGCGCGGAGTTGCCATGGTTTCCGGAGCGGCATAATGaaatgaaaactAAGTCAAAAGACATAGCATCCCAACCTCAGAGGGTTTTATGACGTCGGGGGTCGTGTCAGCCTAATCTGGTCATCCTTGAGTGGAGCCTCACTCTGGCCAATAGGATTAGAGAGTGAGGGAAGAGGCTTTACCTATTCTTGGAGTATGTGATGGCAGTCTTCTCCTACTGAAGCACAGAGTTACATCTATCTCTCGATTCTGACCGTAAACTTTTTCTGTATGACCAGGAACATTATTTTCCTTTCCATTGGAGAAACCGAACCAAGCATGGAGCTGGGAAAAGCCAAGCTTCTAAGAACAGGGTTGAATACCCTGCACCAAGCCATTCACCCGGTGCACGGAATAGCCTGGACGGACGGTAAGCAGGTTTGTCTCACGTCCTTGTATTCTGTCGAGGGTGAGCCCAAATTTGGCGACACCAATGTCATAGGACAGTTTGAACACGTCTTGGGACTCTTCTGGGGGCCGCTGTGCTGCTCTGGTTCCCCGGCGTTGCTTGCCGTCCAGCATAAAAAGCATGTCACGGTTTGGCAACTTCAGCTGAGCGCTTTAGAGCAGAACAAACTCCTCTGCACGCAGACCTGCGAAATGAGCGAGCCATTCCCGCTGCTGTCCCTGGGATGCGTCTGGCATCCCAAAATGGACATTTTAGCCATTTTGACTAAGCGAGACGCCTCAGTCTTGTTTTCCGTGCGGGTCGATAATCGTCGCGTGAAGGCCGAGATCAAGGGCAGCGGTCTGATCCATTGTGCCTGCTGGACTAAAGACGGAAACCGCCTGGTGGTTGCCATCGGAAGCTCATTGCACTCGTATATTTGGAACGACATCCAAAAAAGCCTGGTGGCGTGTTCCTTCTGCCCTATTTTTGATGTGGGTGGGTATATCTGTGCCATCGAGTCCACCAACGAGGCTCAAGTGGCTGTAGCGACTGAACTACCGCTTGATAAAATTTGCGGGCTCAACGCAGGCATCGCGTTCGACCTGCCTAACGAGTCAGAGGCTTCGACGTGCCGCCCTTCTCCCGTTTTGACAGTGGATGCGGACTATTATTTGGACAGACGGAGATCATGTGATTCCGAGCGCTCTGGACACGCCTCCTCATCCGGACCAATAGATCTAACGCACATTCTTGCCAAACACCGAAAATCTGATCCAAGTCCACTCATTCACTTGAGGCGGCGGGATAATGTGACGGGAACGGGTCAGGACTCGTCACATCTGATTCTGGTGACTTATGAGCGCAAAGTCACCACTACGAGGAAGGTGAGCATACCTGGCATCTTGGTCCCTGACATTATCGCCTTCGATCCAAGCGGCAGTACGGTTGCCGTTGCGTCCAACACATGCAACATGATCCTAGTTTACTGTATCACGGAATCTTCCATGCCTAATGTGCAACAGATCCAGCTACAAAAAAATGAGAGGCCCAAAGGGGTGTGCTTTTTCACCAACAAGATGTTGCTCTTCATGATTGGCCGGCAGAAGTCCAATGATCCTGCTTTCCTCCCCTCCTCCAACACAGACAAGTACATCTTGAGGCTAATAGCCAAGGAGCTGGTATTTGATGAGGAAGGTGCCACCCCAGCGGTTCCCAAGCCCGAGTCGGCTAGCCAACATCATGGGATTAGACGTCATTCTGAGAACTTTTCTAAAGAGGACCGTCTATCAATTAAGGATCTAATACTTCCCGGAGGCTCGGTAATTATTTCACCATCCAGTCGGAGGAAACTAGTCGAGGAGGTACGCAGCTCAGATTTGAGCCCCGTGGCAAGCTCTGCCGACTTCTCGGATAGAGCATCCAGTGCCTCTTCTGTTACTCTGGAAACCTACGACATGGATCACATCAGCCGCATGACCACGCTTGCCGTAGCTGGTCAGGCCAGCCGGGATTCAAGTCGACCCTGTTCACCAAGGTACGAGGCCTCAGAAAAAGTATACTCCGATGCCACTCCGCCAAAGAACAGTTGTCAGTCCAAAGAGAAGAACCTGGAGCAGCTGACGCAGAACATGGAGAGAATTTTCACCCGATTTGCTGATGTCCAGCAGTGCCTCGCAGAAATCAGAGACTTCACCCAGAACGGCAAAAAGATTGCATGCAGTTATCCTTCTGCTTATGAACCGCAATATGTGCACATTACGTGTCAGAAACAGTTGTCTGAGAATGTGTATACGGACGAGAGAAGGCCGCTGTTGCTGTGCGGAGGACGGATCTGCCTGCAAGTGATGCAGGAACTCTTCGGCCTGACAGTCATAGAGATGATGCATGGTCCCATGTGGATCGTCTTGGTGGCTGACGCCGATGGTTTCGTTCCGctcacatttaaacacaaagaCGAGCTCACAATCAGGAGCGCAAGAAGGAAATCCCCTATGAGACCCCAGAGTTGCGCCGACGTGTTTCCCCCTGAGAGTCCAGTGGCAGAAAAATGAAGCCTGTGTCATATCAAGAGGActcattagaaatatttttttttatgatatttgtcTTGTTAGCTGGATATCTGTGGCTAACACGGGGATAATCCAAACTCTCAGTTTGGAATTCAGGAAAACGTCTTGCTGACATATTTGCCactgtgatatatatattggaTATTTATAGGTATATGCAATGTGAAAGTTGTCAAGGGTAgaacagttttttaattttcagaagaAATACTTGAGTGCCTGCTTGATTACTTTTGCTTAAATAGGTTCTattttgtcacacacacacaaaaaaaccgAAGGAAcatgtaatgtaaaattaaagaaGATTCatagtgtttgtatttttgtatgtttcatcaTTGAAGGAGAGAGTAACATATTGCATGTCATTCTGATTCCATAACAGCACGTTgcttaaatttaacttaaattgaATTGGTATAAAAACTCAATGTATTGTCTTGTAAAGCATTCATCTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208102 lncRNA downstream 386320 22112160 ~ 22112425 (-) True G140971
TU208101 lncRNA downstream 387876 22110663 ~ 22110869 (-) True G140970
TU208100 lncRNA downstream 392464 22105969 ~ 22106281 (-) True G140969
TU208095 lncRNA downstream 400406 22097906 ~ 22098339 (-) True G140967
TU208092 lncRNA downstream 416128 22081524 ~ 22082617 (-) True G140964
TU208233 lncRNA upstream 33565 22539367 ~ 22539567 (-) True G141078
TU208234 lncRNA upstream 33791 22539593 ~ 22539914 (-) True G141079
TU208235 lncRNA upstream 34118 22539920 ~ 22540327 (-) True G141080
TU208237 lncRNA upstream 34886 22540688 ~ 22541150 (-) True G141082
TU208238 lncRNA upstream 35661 22541463 ~ 22541694 (-) True G141083
XM_043219319.1 mRNA downstream 28475 22394835 ~ 22470270 (-) False atad2b
XM_043219318.1 mRNA downstream 28475 22394835 ~ 22470270 (-) True atad2b
XM_043219320.1 mRNA downstream 28475 22404012 ~ 22470270 (-) False atad2b
XM_043219962.1 mRNA downstream 401540 22092072 ~ 22097205 (-) True gzf1
XM_043220027.1 mRNA downstream 439919 22053057 ~ 22058826 (-) True chgb
XM_043219692.1 mRNA upstream 35975 22541777 ~ 22552274 (-) True opn8b
XM_043220550.1 mRNA upstream 51702 22557504 ~ 22567131 (-) True opn8a
XM_043219919.1 mRNA upstream 164240 22670042 ~ 22683646 (-) True clic5b
XM_043218592.1 mRNA upstream 264117 22769919 ~ 22776432 (-) True lin9
XM_043220475.1 mRNA upstream 271319 22777121 ~ 22791942 (-) True parp1
unassigned_transcript_2512 other downstream 382956 22115707 ~ 22115789 (-) True trnal-uaa_37
unassigned_transcript_2511 other downstream 383625 22115038 ~ 22115120 (-) True trnal-uaa_36
TU208103 other downstream 385701 22112602 ~ 22113044 (-) True G140972
TU207994 other downstream 651828 21845806 ~ 21846917 (-) False LOC122325102
TU207987 other downstream 657277 21841113 ~ 21841468 (-) True G140883
XR_006247154.1 other upstream 883367 23389169 ~ 23401391 (-) False mcm9
XR_006247155.1 other upstream 884663 23390465 ~ 23401391 (-) False mcm9
XR_006247156.1 other upstream 884665 23390467 ~ 23401391 (-) False mcm9
XR_006247216.1 other upstream 1286275 23792077 ~ 23823050 (-) False tbc1d32
TU208856 other upstream 1498885 24004687 ~ 24006665 (-) True G141502

Expression Profile