RNA id: XM_043219758.1


Basic Information

Item Value
RNA id XM_043219758.1
length 6962
RNA type mRNA
GC content 0.45
exon number 25
gene id stxbp5a
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 16691307 ~ 16760481 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCGCACGCGCGGCGCTGCAGCGGTGTTTCCGCGTTGAGTGGAGAGCAGAAGGGATCGAGCGagcgagaggagagagagagagagagagagagagagagtgagagagatagagagagtgggagagagagGATAGAGGGAATTTGAGACGCAGCGGGACGCCGAGTCAGAATAAACGGACACCCCACAAACgataacaaaaagcaaaaaatatcaACGTTAACAACCCAAGCTTTTAGCCATGGAGGACTCGgtgaaaaacacttttaaaatgtgagGTTTAAAGAGACGTGCTGCAGAAACGAGCGAGAGCGGCTTTCCCCCTCATCATCCACGGCTGATCTCGACTCGGTGCTCCCGTCCCCTTCCGTCTCTCGCACCGGGGGGAAAATGAAGAAGTTTAATATACGTAAAGTGCTGGACGGCTTGACGGCTGTGTCGTCCCCTTCTCCATCCCCGCAGCTCGGGGCCAAGGAGAACGAGCTCATCCCGGAGACGCTCCAGTCTGAGCACTTCCAGCTCTGCAAGACTGTGCGCCATGGCTTTCCTTATCAGCCCTCCTCTATGGCATTCGACCCCGTCCAGAAAATCCTTGCCATCGGGACTCAGAGCGGAGCTTTACGATTATTTGGCCGACCCGGTGTGGAGTGTTACTGTCAGCATGAGACCGGAGCAGCCGTCATCCAGCTACAGTTTCTCATAAATGAGGGGGCGCTGGTTAGTGCTTTGGCTGATGATAGTATTCACCTGTGGAACCTGCGACAGAAGAGACCAGCTGTGCTGCACTCACTCAAGTTCAACAAGGAGAGGATAACGTTCTGTCATCTGCCCTTCCAAAGTAAATGGCTGTACATCGGCTCGGAACGAGGAAACATCCACATTGTAAATGTGGAGTCCTTTACCCTCTCAGGATACACCATCATGTGGAACAAAGCCATTGAACTGTCCTCCAAGGCCCACCCCGGCCCAGTCGTTCACATTAGTGACAATCCTATGGATGAGGGCAAGcTCATAATAGGATTTGAGTCTGGGATCGTAGTGCTGTGGGATTTGAAATCAAAGAGAGCTGACTACCGGTACACTTACGATGAGGCGATCCATTCTGTGGCCTGGCACCACGAGGGGAAGCAGTTTATCTGTAGTCACTCAGACGGCACACTGACCATATGGAATATAAAGTCCCCAGCCAAGCCTGCACAGACAATCACGCCACACGGAAAGCAGCCTAAAGATGGAAAAAAGCCAGAGCCTTGCAAACCCATTCTTAAAGTAGAGTACAAGACCACAAGAGCAGGGGATCCGTTTATGATCTTCTCTGGTGGTTTGTCGTATGACACTGTTGGTCGACGGCCATGCTTGACAGTAATGCATGGAAAGAGCACGGCAGTATTGGAGATGGATTATCCCATTGTAGATTTCCTCACTCTGTGTGAAACGCCATATCCTAATGATTTTCAGGAACCATATGCTGTAGTGGTCCTCCTCGAAAAGGATTTAGTTGTTATTGACCTTGCACAAAATGGTTACCCAATCTTTGAAAATCCGTATCCCATGATGATTCATGAGTCTCCTGTGACGTGCTGTGAGTACTTAGCCGATTGTCCTGTGGACCTCATACCTGCACTTTACTCTGTCGGGTCTCGCCAGAAACGACAGGGCTACAGCAAAAAGGAATGGCCTATCAGTGGCGGAAACTGGGGCTTGGGCACACAAAGCTAccctgaaataataataactggGCATGCAGATGGTTCAGTGAAGTTCTGGGATGCTTCGGCAATAATGCTCCAGGTGCTGTACAAGCTAAAGACAGCTAAGGTGTTTGAGAAAGCTCGCTGCAAGGAAGAGAAACCCAGCACAGAGATTGTGGATGAGGACCCATTCGCCATTCAGTTGTTGTCTTGGTGTCCTGAGAGCCGCATGCTTTGTGTGGCGGGCGTCTCTGCCCATGTCATCATATACAGGTTCAGCAAACAGGAAATCACCACAGAGGTTGTGCAgttaTTGGAGATCAGGTTACAATATGAGCTGAATGATCTGGAGTCTCCAGAAGGGGGAGGAGATCAGACACCAGCTCCTCCCACACCAAGCACCTCCCCCAGCCCACAAACCACCGCCCCTCAGACGCACACCTCCACTAGCAGCAACTCATCAGATGGGATCCGAGACAACATACCCTGCCTCAAGGTGCGCAGCAGTCCTCTGAAGCAGTCTCCAGGGTATCAGGTGGAACTGGTGGTACAGCTGGTGTGGGTCAGTGGAGAGCCGCCCCAGCAGATCAGCAGCTTGGCCATCAACTCCAGCTATGGCTTAGTGGTGTTTGGCAATAGCAATGGTCTGGCAGTAGTGGATTACTTACAGAAGACTGTTCTGTTGAATCTGGGAACTGTGGAATTGTACGGCTCTAATGATCCGTATCAGAGACAACCGCGATCTCCCCGCAAGAGCCGGCAGCCTTCTGGAGGGCTTTGTGACATTAACGAGGGCTCAGCCACCTCAGAGGATCGCTGCAAATCCCCCACCTCAGTCCTACTCTCTGTATGTCCCCCGCGGGGTTCCATACCCCTAGACAACAGGGACAACTCCTTCAGCCGCTCACGGAGCTCCAGCGTGACCAGTATTGACAAGGAAGCACGAGAGGCCATCACATCTTTCTATTTCTGTGAGACGTACAACCGTAAAGCAGATGGCGGGCTTACACCTAGTCTGTGGGTTGGCACGTCCTTGGGCACAGTCTTGGCAATCTCCCTCAACATGCCCCCTGCTGGAGAGCAGAGGCTTCTGCAGCCAGTCATTGTCTCCCCTTGTGGAACTCTTGTCAGGTTGAAGGGCAGCATTCTCCGGATGGCTTTCCTAGATTCTACAGGGTCTCTCCTCCCTTCTGCTTTTGAGCCATGGTACGAACCCAATGCCCCGGCCAATGGAGAGGAGCGGGACAAGGTCCGCAAGAGACGGCCGGTGTCTGTCTCCCCATCCACATCCCAGGAACTGAATGAAAACCAGTATGCTGTGCTGTGCTCTGAGAAACAGGCCAAAGTCATTTCCCTGCCCTCTCAGACCTGCGTATTTAAACACAACATCACCGAAACATCTTTTGTGCTGCGGGCAGATGTGGTACAGATGAACACTGGCATTTGTGTGGCCTGCTTCTGTGCCAATGGACACATCATGACCCTCAGTCTGCCAGGGTTGAGACCACTGCTGGATGTAAATTACCTACCCCTGACAGATATGCGGATAGCGAGAACGTTCTGCTTCACCAACCTCGGCCAGGCCTTGTACCTGACTTCTCCTACTGAGATCCAGAGGATCACCTACAGCCAGGAGGTCTGTGAGAACTTACAGGAAATGCTAGGTGAGCTGTTTACTCCAGTGGAGACACCTGAAGCTCCAAACAGGGGATTCTTTAAGGGTCTGTTCGGAGGAGGAGCACAGTCTCTAGACAGAGAAGAGCTTTTCGGCGAGTCAGGAGCCGGAAAAGCACCACGCAGTCTCGCTCAGCACATTCCAGGTCCCGGGGGTATAGAAGGCATGAAGGGGGCAGCGTCAGGCATCGTGGGTGATCTCGCTCGAGCTCGGATAGCGTTGGATGAGAGAGGGCAAAAACTGAGCGAGGTGGAAGAGCGGACGGCAGCCATGATGGCCAGCGCTGACGCATTCTCCAAACACGCTCATGAGATGATGCTAAAGTGTAAGGATAAAAAATGGTACCAGTTCTGATCTCCGCAAAACAGCAGAGCCCAAAGGGACTCAGGAGTTCTCCTACACAGCCTTGTTCATCCGTAATCCTTCTCCCACTCCCATCTTTATCTCTCCTCTGCTGGACCAGTGGGATCCCTCGCTCTTTCCTAGCACAATATTAAATACAGTCTGCTTACAGAACTGAGAGCGGCCCCAATCTGAGGAATATCATACCATGACGGCGTCCACTCTTccgttttttttgtctgttcgTTTAATATCGCCAATCCCCTCTCATGGCGGCTGGGCTTTGCACGCCCTGAAATACCATTTCTTCTCTCAGTCCTTGAATTGTttttgtgctgttgtttttttgcaatcaCGAACCTGCCTCCCACATCGGAGAGCAGAAATTAgtcaaaaaaagacagacagactaaacaaaaaatacaataactaAACAACAAACgtcttaaaaaaatctaaaaaaaagagtatatatacataattctATATAAATCTCTGTAAAAATGCCATATTCGCTATTGACTGTcgagaaaaaactgaaatacgAAGACACCAGGTGAAGCACTGAGAAAAGATGTCATAACATGGAGGAGTCAAACCTTTCAGAAGAAGAGAAAACGTCTCCTTTCTCCAAAAACCTACACAATATACTTACTctgtacattttttcttttttttttcaattcgaATTGCCCCTTTGGTTTAATTAGcgtttgattatttatttatttttaattatttatttagcaaaacataataataataatttgtaaaatcaACTGTaaatgtctaattaaatatacagtggtcatatttttatggaattATTGTGAATATCactttaaataatgctttacaTTAAAGTACCATCGTGAGGGTTTACAATAAGTCGGCATGATCCAGAGAATTAAGTGACAGATCTATGtggtaaatgaatgaaatatgtaACGAAGTAATGATGGTATTTTCATGTGATACATTATACAGATGTTTAAACTTTCTATGAAACTCCGCACAGAAAATATCTGGTCTGGACTGCGTTGTGGAAGAAAGTTGAAGGTTTAAAGTTATCCATGTTTTGTTGGGTAGACAGCCATATAGACCTCAACAGCTAGAACATTTGTTGTGACTGAAAATGACATCGCAGTCTCTTCGGCGTTGACTCTGGGATTTGATTTTGTCCATTAGACCAGCTTTCTCACTCCTGCATACCGCGTAGAATTAATATAGACGCTTTAGTTGAACATGTAGAGATTGTACTTTAGTAACTATTTTGGTCCACgtttcatttgttaaataaaaagcacttaCTGTACTTTCGGAAACTGCTCTTTTCATACCTGGACATTTGGAGCGGTTTTCCAGCTCTAATCTTTGATGACCTGAGACTCGATTATGAGCTTGAAGTAGGGCGGAACGCTTTCAGTGACTTGGAAACAATGTTCACTGTAGTTCTGAATGTCAGGAGGACGTGTTTCTGTCTGGTTTCACACACTGGTGCTTCACGTGTAAAGCAGCGGCACAGAACGTACTTCAAGATCATCATCTGTGAAAACAACTTGCAGTGAGTGTTAGGTGTACATTCCGAACCGGAAAGCTAGAATTTAGTATCAtcaaatacaaaagaaaaaaaaatgtacagcaaACGTCTTTCTCGTCCCATTTCTCCCTTGAAACCACATTTTAGtgccattatatttatttgtggtttGCAAGAAATGCTGCTATATATGTTGCATTGATTACGTGTTCCATTGTCGTTCCAGATACCGATTTTCACTTGCCTCTCTGCCCAAAGTTTTTTGCCATTCTGTGAATGAAAGGAGTAGTTCGACAATCTGGGAGCGTAAATTGCGAGTGGTCCAGGCCATACTGATCCTAAGACAGTTGCCATATCTTTTCAGACGCCAAAGATTTTCTTTCACTGAGTTCTGTACTCCATTGACTGTGTTCGACGGCTGTTTGTGTCTCAAGTACCACTGCATATTTCACCAGTAACAGTGTTGAGGACTTTTCTGATGTTTTTGGCTGTGTGCTAGTCTGCCTTTCGTGTGTTTCGTATGCCGTACTTCAAACAAAGAAAAGGGAGGGGGGGGGAACTACAAAACAAAACGAAGCCAATCTCTCTCAGACTCTAAATGTTTCTCTGTGTTGGACTCTATATTCTCTGTAGACGTGTTTTCATGCCATGGTGTTATAGTGTTTCTGAAGACCGggtttgtttttgaatatcTCGCTCGTATGTCATCTCTCCCGATTAActacttaaattatatttgtacgATGTGTATTTTTCTCTGCAGTACTGTATTTCCCTGAATAGATATCCTTGTCATATTTTTAATCAtcgattattaaaaaattatttttatatatgctttGAGGAGGACGTATTTTGAGCTCGTCGCGCTCTGTTACTTGTCTTCATatctttgttttctgttgtgcGGTCCGTTTGTTCATGCCATCATCGACACAGCAGGGTGATTTTTGAATTCAACACGAGCGAGTGAGCTTTTCCTTGAAATTCTCGCATATAAGCGTGGTTCATTCGAAAAAGGCCATGCATTTGATTACGTGTGttggaaaatacattttgggcCCTGATaattcaaaaccaaaaaaaaaattttttttccaacaattGGACGGTGGCTCATGTACTCATGAGATATTCCCAGGAAATACTTGATGGCCTAGGTTGCTATTTTGTCATTGTCAAATCGATAAAGTATCCAATCAGCCGTGTTGAACTGTAATGCTGTAAATGTCAGTAATAAGTGTTCTAACTCCAGCAGAATTTATCGATTCAGTTCATTCATGTCTGTTTCAGAGAGGTTTCAGACTCACTCTCGATGTGAACCTGGTTGTTTGCCCTTTGTAATCTTTTCATGACTaaggcgaaaaaaaaaaaaaaaaaaaaaagttcttgttGCTTTCTTggaattaatttcttttaatttattcattttgaaatgtttcatgttgactttaaatgaaTCGTTTTATTTGTCTCAGACAGAACATTCTTACctgaaatattacacttttaacATGCAGAAGAGCCTCATTCATTTTCTGTCCTGAATATAACGGTTATCAGTGGGTTGCAGTATTTTCTCATTGTAGCCAATTTCTTGTACAGTTTTATGCAAATTTCACATGGATGTTTATGACTATCTGCTGCCACAAACAATTTAGAATTTCTGTAGATAGAAATTACTGtgcaatggaaaaataaaacgatTTAAAAATC

Function

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205289 lncRNA downstream 235904 16454884 ~ 16455403 (-) True G139032
TU205285 lncRNA downstream 239414 16450526 ~ 16451893 (-) True G139029
TU205207 lncRNA downstream 365554 16323406 ~ 16325753 (-) True G138983
TU205210 lncRNA downstream 365554 16324662 ~ 16325753 (-) False G138983
TU205179 lncRNA downstream 474591 16214344 ~ 16216716 (-) True G138960
TU205435 lncRNA upstream 82738 16843218 ~ 16845168 (-) True G139139
TU205444 lncRNA upstream 90074 16850554 ~ 16946540 (-) True G139145
TU205448 lncRNA upstream 98863 16859343 ~ 16860256 (-) True G139147
TU205451 lncRNA upstream 99846 16860326 ~ 16896383 (-) True G139149
TU205449 lncRNA upstream 129459 16889939 ~ 16891460 (-) True G139148
XM_043219908.1 mRNA downstream 1168 16520443 ~ 16690139 (-) False sash1a
XM_043219907.1 mRNA downstream 1169 16520443 ~ 16690138 (-) False sash1a
XM_043219905.1 mRNA downstream 1169 16520443 ~ 16690138 (-) True sash1a
XM_043219906.1 mRNA downstream 1170 16520443 ~ 16690137 (-) False sash1a
XM_043219914.1 mRNA downstream 1171 16520443 ~ 16690136 (-) False sash1a
XM_043218921.1 mRNA upstream 5235 16765715 ~ 16798477 (-) True adgb
XM_043219428.1 mRNA upstream 39280 16799760 ~ 16814144 (-) True rab32a
XM_043219426.1 mRNA upstream 54225 16814705 ~ 16840062 (-) False grm1a
XM_043219423.1 mRNA upstream 54225 16814705 ~ 16840062 (-) True grm1a
XM_043219424.1 mRNA upstream 54225 16814705 ~ 16840055 (-) False grm1a
TU205287 other downstream 229091 16455468 ~ 16462216 (-) True G139030
TU205233 other downstream 324535 16364810 ~ 16366772 (-) False fndc1
TU205232 other downstream 325840 16364810 ~ 16365467 (-) False fndc1
TU205229 other downstream 327995 16362131 ~ 16363312 (-) False fndc1
TU205141 other downstream 655054 16028253 ~ 16036253 (-) False LOC122324507
TU205714 other upstream 586326 17346806 ~ 17428071 (-) True erh
TU205713 other upstream 665388 17425868 ~ 17428071 (-) False erh
XR_006247229.1 other upstream 1049794 17810274 ~ 17824201 (-) False swt1
XR_006247304.1 other upstream 1582992 18343472 ~ 18350122 (-) True adgrf3b
TU206351 other upstream 1645547 18406027 ~ 18446949 (-) False G139706

Expression Profile