RNA id: XM_043219765.1


Basic Information

Item Value
RNA id XM_043219765.1
length 4710
RNA type mRNA
GC content 0.46
exon number 21
gene id LOC122324966
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 21713484 ~ 21730228 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gagagagagagagagagagcgagagctgGAGTTATTGTTTGTATCTGAGGTTCACTGAGGATACTGACAGTCTTACATGAAGGTTATCAGAAAGCCTTCAGTGATATATGGATTGTTTACCAAACCTCCAAAATGGAATATCTGGCTTTAAcggaataaatatttgtaaatatcaCTTAATATTCAGTTAATTTAATCCcttcataattttatatatatatatatgtattttttttttgttagttttattttaaagaatgtcaaGAAATGTGATTTGCCACTTTAACAGCAGTAGCTTAAAAAATCACGCTTCCACTTGAATCAGgATGTGGAAGAGCGATTCGAAATGCGTTTGTCATGGAAACGGAGCCGGGGATCGTTAAGGAATGACGAACTGAATCTCTCCGGTGCGTTTCTACTCAAACCCGAGCGGAATAAACTCGGACAGCCGTGACGGATCTTCCACAGACGGCAGTATTACACGTCAAACTCCGGTAGGGCCTCAGTATGTCGGTGAACGGGACTCAGGACGGCCCGGTTACCGTGGCAGAGCCGCACGCTGGCGGAGGCGCGCGCGAGATAACGGCGGCGCGCGGCGGCTCGCTCTCGCTGCCGCGTTTCATGCGTCTCAAGTTTGCGCCGGAGTCTCTGGAGAAAGTTTATCAGACGTATTTTCTGCGGCAGCGGCAGGAGACGTTACTGGTGCTGATCGTGTTCGCGGCCCTCTTTAACGGTTATGTCGTCATCATGTGCGCGGTGGTTTACTCTGAGGATAAACTGAAGACGCTCGCGGTGGCGGCGGGCGGGCTCGCGTCCGATATTCTGCTCTACATTTTGTGCCGGTTCCGCTTGCTGCCGGGATTCGTGTCCCGGGGACTAGTGCCGTACGCACTCTGGACGCTCATCACGGTCCACGTGCTGTGCTACTTCAGTTTGAACTTCGCGGGGTTTCACGCGGCCGGTGACACTGTAGGATGGCAGACGTTCTTCCTCTTCTCCTTCTTCCTCACGCTCCCGCTGCCGCTCGCGCCCATCGCGCTGCTCAGCGCGCTCTCGTGCTGCGCGCACACGCTTCTGCTGGCATTCACTATAGCACAGAGACACCAAGACAAACTGCAGTTAACAGTGCTGATCAgacagCTGGTGGCGAATCTGATGCTGTATTTTGCTGCTGTGCTGGTGGGCGTGATGTCATATTTCATGGCCGACCGTAAGTACCGAACGGCGTTCCTTGAGGCCAAACAATCTCTGGAAGTCAGTCTTACGCTGAAAGAACAGAGCCAACAGCAGGAGGAATTGCTGTTGTCCATTTTGCCGAAGCACATAGCAGATGAGATGCTTCAGGGCATGAAGAAAGGAGCCAATCAGAAATCAGATGCTCAGCAGTTCAATACCATGTACATGTACCGCCATGAAAATGTCAGTATCCTTTTCGCAGACATTGTAGGTTTTACACAACTGTCTTCTGCCGTGACCCCAAAAGAACTTGTCAAACTGCTCAACGAACTCTTTGCTCGCTTCGACAAACTAGCAGCACAACACCACCAGCTGAGGATCAAGATTCTGGGAGACTGTTATTACTGTATCTGTGGTTTGCCAGATTACCGTGAAGATCATGCTGTCTGCTCCATTATGATGGGCCTGTCTATGGTGGAGGCCATCTCATATGTGCGTGAAAAAACTCAGACAGAAGTGGACATGCGTGTGGGTGTGCACACGGGTACTGTACTCGGTGGAGTCCTGGGACAGAAGCGCTGGCAGTTTGATGTCTGGTCTACTGATGTTACTGTAGCAAACAAGATGGAGTCAGGAGGCATCCCAGGGCGTGTGCACATCTCTCAGAACACAATGGACTGTTTGCACGGTGAGTTTGAGCTGGAGGAGGGCAATGGAGGAGAGCGCTGTGAGTATCTTCTGGAGAAAGGTATCGACACATACCTGGTGCTCGTGTCCAAAGACACTCCCAAAACAAACGGAGTGACCAACGGCACAGTGATTAATACAACAAAACCCAGCGGCAGTTACACATCAGTAAAGAACATACCTGAGGAGTCAGAGACACAGCAGCTGCAGCTGGCTAATATGATCGATGAAGGGATAGAGGATGAGCATCTGAACCAGCTGCTGAACAAAGCTctgctggagagagagacagaggagacTCTGGAGAAGAGGAAGACGTCGGTTCTGTCTCTGAGGTTTGAGGACTCTGATCTGGAGTCTCGTTACTCAGCAGAGAAGGAGAGACGGACGGGTGTTGCGTTCAGCTGTTGTTGTGTCGTTCTGATCTTCACCTCAGTCATGGAAATGCTCATAGACCCACAGCTGATAGTGAATTATGTGACTCTAGCTGTTGGTGAGCTGTTACTTCTGATTCTGACGCTGTGTTCACTAGCAGCCATCTTTCCTCGAGTCTTCCCCCGTAGGCTGGTGTCTTTCTCTCAGTGGATCGACCGCACACGATGGGCTCGTAACACATGGGCAATGGCTGCCATATTTGTTCTGACCATGGCTGAGGTGGCTGATATGCTGAGCTGTGTTCAGCCCCCTCTTGTGCTGCTGAACTCCTCTTCCGGCATGACACTCGAGTCTCTGGGTGACGGCGGTTGCGCAGAGAACCCCAAACACTACGGATACATATCAGTGCTGTCGCTCGTGGCAACTGTTATGCTCGTACAGCTCAGCCATGTGGTCAAGCTGGCGCTCATGCTGCTGGTTACCATAGCAACAGGTGCCGTAAACATCCACAGCTGGATGTACATTTACGACATCTACGATTTCATTCGCTACCTGGACTACAGTTACTCAGTGGTTCCCACCAGATATCTTCTGACTGTGATGATTATCATCATGATGATGAGTTTCTACTACTTTGCGCGTCACGTGGAAAGACAGTCGCGTAAACTGTTTCTGTGGAAGATTGAGGTTCACAATCAGAAGGAGAAAGTGTATGAAATGAGAACGTACAACGAGGCGCTGGTCACTAACATGCTTCCTGATCATGTGGCCAAACACTTCCTGGGCTCTAAGATGCGCGATGAGGAACTTTACAGTCAGTCGTACGATGAGATTGGCGTGATGTTTGCCTCTATTCCCAACTTCTCTGACTTTTACACGGAGGAAAGTATAAACAATGGAGGAATAGAATGCCTTCGAATCCTGAATGAGATCATCTCTGACTTTGACAGTCTTCTGGATCGCACGGAGTTTCGCCACATTACAAAGATCAAGACCATCGGCAGCACATACATGGCAGCATCGGGCGTGACGCCGGAGAGCAACACTAATGGATACGCCGACCGCAAGATAGAGGATCAGTCCATCTTGGAACGCTGGCAACACTTCGCTGATTTGGCAGACTTTGCACTGGCTATGAAAGTCACACTTGGAAACCTAAACAAACAGTCGTTCAATAACTTCATGCTGCGCATAGGTCTGAATAAGGGGGGTGTGTTAGCTGGAGTGATTGGTGCTCGCAAACCTCATTTCGATATTTGGGGAAACACTGTAAATGTGGCCAGTCGTATGGAGTCCACTGGGGTTATGGGTAACATACAGGTGGTGGAGGACTGCTATAACATCCTGAAGGAGTACGGTTTCCGTTTTGTCAGAAGAGGACCCATCTATGTAAAAGGAAAAGGAGAACTGCTCACTTTCTTTATGAAGGGCAAAGACAACCCGGTCTCAAAGACAAATGCAGTGTCTCTCCCACATCAAATACCAGACAAATCCTGAGAAGACTGAGGATGATAAGgacattgacattttattctgtgttattttgggcctttttctacttttttttagaaacaatgCAAAAGGGTCAAAATGGGTCTCCCAAATAAGCATTACAGCTCAACAAGTCTGCAGCACATGCACAACCCAATAGACAACTCTGGAAAAATTACCCACTACAAACAACAGCCAAATGTTGTATTAACTGAAAAACTGatattgcttgttttattttaaaaacacatgttCCATCATTGAGACAGATCAAAAACACACCATATGGTCTATTGCATGCTTTATAcacttttggttttaaaaatagCTGATATGCATTTGATATGGTTACAGTAAACTATGAACTGACAGttgtaattacagaaaatgttaTTGTTGGCTATATAAAGCCCATAATAATTGATaaagattattataattattgaacacaaacaaacacaatcagGACCAAAAAACACTACTCAAATTATGTCAGCTCAAAGACACACATCACTTTAACAGAAGagcatgaaaaaatgtatatcattCAGAATTTTGGATTCTATTATTACAGCGTTAagagttatatttttattttgcatgtagCTTTAGCCAAGAATATCACACTGAGACAATATTTTAGTTGATGTATAGTCAgaacgtttttttatttactttttttttaataatcaccaTCTGCAGGTCTTTATCTCATACCCAGCAGGCTGATTGACatttaatgcctttttataaacacatttcactCGTGACGTACTGTTTGTTTCATGTATAGACAGACCTACATGAAACTTTTGGTTATAGATCAGATAATTATGTCTCTCAGAATGTGTGGATTTTTTTGTAGATTGTGGATTTAGCAGCTCTTAACGctgttgtcagtttttttttattgtttgacagAATAAGAAAATTTCATGACTTAAAAGGCAGCcaataaaaaaacctaaaaacattacatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207881 lncRNA downstream 14209 21698420 ~ 21699275 (-) True G140807
TU207904 lncRNA downstream 41560 21576838 ~ 21671924 (-) True G140824
TU207906 lncRNA downstream 145124 21567633 ~ 21568360 (-) True G140826
TU207896 lncRNA downstream 161253 21549084 ~ 21552231 (-) True G140817
XR_006247240.1 lncRNA downstream 201001 21507244 ~ 21512483 (-) True LOC122324936
TU207946 lncRNA upstream 36721 21766949 ~ 21768597 (-) True G140859
TU207872 lncRNA upstream 40802 21771030 ~ 21774369 (-) True G140801
TU207986 lncRNA upstream 110287 21840515 ~ 21840765 (-) True G140882
TU207988 lncRNA upstream 111534 21841762 ~ 21842034 (-) True G140884
TU207989 lncRNA upstream 111898 21842126 ~ 21842345 (-) True G140885
XM_043219767.1 mRNA downstream 422 21699406 ~ 21713062 (-) True wdr26b
XM_043219768.1 mRNA downstream 829 21699406 ~ 21712655 (-) False wdr26b
XM_043220185.1 mRNA downstream 15790 21690418 ~ 21697694 (-) True fez2b
XM_043220184.1 mRNA downstream 15791 21690418 ~ 21697693 (-) False fez2b
XM_043220238.1 mRNA downstream 57920 21640329 ~ 21655564 (-) False lpin1b
XM_043220634.1 mRNA upstream 2316 21732544 ~ 21741077 (-) True batf
XM_043220461.1 mRNA upstream 20648 21750876 ~ 21755193 (-) True jdp2b
XM_043220462.1 mRNA upstream 20648 21750876 ~ 21755189 (-) False jdp2b
XM_043218899.1 mRNA upstream 29894 21760122 ~ 21763823 (-) True si:ch211-153j24.3
XM_043218898.1 mRNA upstream 29894 21760122 ~ 21763816 (-) False si:ch211-153j24.3
TU207887 other downstream 201131 21509629 ~ 21512353 (-) False LOC122324936
TU207613 other downstream 434743 21198710 ~ 21278741 (-) True G140616
TU207486 other downstream 737734 20973404 ~ 20975750 (-) False crnkl1
TU207179 other downstream 1650507 20061602 ~ 20062977 (-) True G140277
TU207100 other downstream 1654985 20057624 ~ 20058499 (-) False G140227
TU207950 other upstream 2318 21732546 ~ 21741004 (-) False batf
TU207987 other upstream 110885 21841113 ~ 21841468 (-) True G140883
TU207994 other upstream 115578 21845806 ~ 21846917 (-) False LOC122325102
TU208103 other upstream 382374 22112602 ~ 22113044 (-) True G140972
unassigned_transcript_2511 other upstream 384810 22115038 ~ 22115120 (-) True trnal-uaa_36

Expression Profile