RNA id: XM_043219769.1


Basic Information

Item Value
RNA id XM_043219769.1
length 6905
RNA type mRNA
GC content 0.46
exon number 26
gene id LOC122324969
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 4928862 ~ 4966781 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCCTGATGGTCATTTGCTTTCTGCGCTCGAGGAGAAAACGTACTTGTCCTGGAAGATAATGCCATATTGAAGGACTTTGTTGATCATTTTGACAATTATTAATAGTCCAATACAGGCGTCTTCGTTTCAGCTGCGATGAgcgatggagagagagagagaggaacagcTGTGGTAGCGAGACAGTGAAGGGAGGAGGATCTCAGTAAGAGTCAGATGCTGCACCAGGCAGGAGCAGACAGAACCGTAGACAACGTTGGAAAAAGAGGATGATCATTGTGAAGGAATGCGAAATATGaaggaatatatttttgtgCTCTTACAACTGGCTTAATAACAGATCAGAATGGGAAATACAGATAGTCAGTACATCATCCCTGGTAAGGGAAAGTCTAGCTCCCTAAAGCTGCACACTTCTAAAGATGAGGCACTCTCTCCACACTCTTGGTGGAGGAGCTCCCAGAGCACCTCTGGATACAAGGCCAAAAATGGTTTTTCACCACACAAGAACAGCCAACCTTACATTTCCCGCCATTATGACTGCATTAAGGGGGAATCCAGTGACAAAGTACATTCAGAGAGCCACAGAGACTATGACAACATTTTATTCCAGGGAAATGGATTCTTTGTAGGCTACAGACAACAGACCGGAGGCCTCCAGGCCCCAGTGAGGAGCACCGGTTCTGAACTTAAAGATAATAAGAGCAGTCCCAAAGTTCTTTTTCGCGAGGATGGAAGTCTGAGGGTTGAGTTTACCAATGCACGGAGGGAGCCGGATGTTGAGCTGTCACTGGGCAGCTGTCTCAGTGGACCTGTTGATGCTATCCAAAGGGCCAGTAATGGGAGCTCTCTTAGCTCTGAGGGTTCATGGTATGACTCACCATGGGGGAATGGGACAGAAGATCTGTGTGATAACGTCTTCACCACCGGCCAACCTTCGGATAACAGTAGTGGATATACCACACTCTCATCTACACGTACTGTGGACTTTGGATGTTTTAATGGTTACAATACAGAGCAATCAGAGAACCGTATGGGTAACCTGACCTGCCAACCCACAGTTCACTGCAGTCAGTATGTAACCAATGATTGCAATAGTAATGGGTACAGTGCTAACCGCTCTGAGGAGGACAGTGGCATTGGAGACTCTGTGCTAATTCATTTAGAACATAATGGACTATCTGACCTTTACACAAACCCCAACATGACTGTGCCATTCCCTACCGTGGGCATCCTTGCAGCGGATCAACTCGAGGATGCTCCTCACCTTCAAGCCTCAATGACCTCTTCCCTGGATGTGAACTCCCAGAATGAGAGTCAGAAAACCCAGAATTACATCTCACAAACCCTGCCATGCAGAAAAGCAGTTCCTGATGGGAATACAAGGAAGGACTCGCTTAAGAGTCGCATCCGCCGCCTCAGCGATTGGACGGGAAGTCTGAGCAGGAAAAAGCGTAGGCTGCAGGAACCTAGTACTCTGGACTTTACAGAGGTTGTCAGCTGTGGAGCTGGGGTCACACTAGAGGAATCCAGACCGTTTTGGAATCCAGTGTCCTCCCAGACACTGTTAGACTGCTCTAGTTCCTCAACAGGCCCATTTAGGCAGCAAAACCCGAGTGCGGCTTTGAGGCAGAACATCTATGAGAACTTTATGCAGGGCCTAGAGACTGGAAGCAGCAGTGGAACTGCTGAAGGACTCCAGGTCTGGGAATGTGAAGGAGAAAGCAGCAGTGGCTCAATGGGCTCCTTGGAGCAAATGGATTTCCTGTTTGAGAAGGATCAAGGTGTTGTGCGGAGGGCTGGTTGGTTGGCTTTTAAGCCCCTCATTACCCTCCACAAAGACCGCAAACTGGAACTGGTAGCAAGACGCAAATGGAGGCAGTATTGGGTCACGCTCAAAGGCTGTACACTTTTGTTGAGTGAATCAAATGGAAAGACCTCAGCTGAGCAAGAATGCACACCTCGTTACGCATTGCTTGCTGAAGACAGTATTGTTCAGGCAGTTCCTGAGCATCCCAAGAAAGAGCACGTCTTCTGCCTCAGCAATGCCTATGGAGATGTCTATCTCTTTCAGGCTGCAAACCAAACAGACCTTGAGAACTGGGTGACGGCCATCCATTCTGCCAGCGCTTCCCATTTAGCTAAGCGTCAGGGGAAGGAGGACACTCTGCGTTTGCTTAAGAGCCAAAGCAGAGCTCTCCTGCAAAAGATCGACATGGATGGCAAAATGAAGAAGATGGCAGAGTTGCAGCTGTCCGTCATCAGCGACCAGAAGAACAGGAAGGCTATTGAGAGCCAGATCCTGCAATGGGAACAGAACCTGGAGAAGTTTAACCTAGAGCTGTTCCGCATGCGCTGTTACCTGGCTAGCCTGCAGGGCACAGAGCTGCCCAATCCAAAAAGCCTGCTGGCCACTGCTGGACGCCCATCTAAAATGGCGCTAGGTCGTCTGGGAATTTTTTCTGTCTCATCCTTTCATGCACTGATATGCACTCGCGATGAAGCTACCCTGAAGAGACGATCTCGCTCTCATCCTCGAGGTATGCGGAACAAACGAGGACTACTCTTTTCTTCACAGAAAGGATTAGACAGTCTGACCAAACGCAACCGGGAGAAGAGACAGTCCCTGTCCCAGATATTTGAAGGATACTCCTCTGGATCATTTGGTCATTCATCCACGCAGAACAGCTCAGAGCAGAAGCTGGACGGCTTCACCAAATTGCATGTAACAGCGCCACCCGAAGGAAACCAGTGGGACTGCAGTCTGGAGAGCAGGGTGTTCGTGCTCATGCCAGACACTCAGGTCCTCAGTGTGCCAATCAAACAGGACTGTCTGGTTTCTGATGTTCTCTCCCTGACCTGCAAGATAAAGCAGCTCGACCCAGCTCTGCACTGCCTGCACATGAGGAGACATCTGGGACAAGATGTGGAGAGAAGCACTCCAGCGCCCACAGACCTTGTAAAGACCCTGGTCTATGATGAACTGGAAGTTTGGCCTATCAATGTGTTGACCATAAACATGTCACGACCGGACACAACCGTAGATTTTGGTTTTGCGGTCACAGGTCATGTAGATGGTGCCAGGAGAAGTCATGTGTTTGTGAGCGAGGTGAATCCTGAAGGCCTGGCGTTTATCCGAGGTCTGAAAGCTGGTGATGAGATCTTGACTCTCAATGGCGTGAGTGTGGCCTCTCTAGACCTGGGCCTCATGCAGAGCTTATTCAGCCAGCATGAACTCCATCTTGTCCTCAGACGCGAGGACTACAGTACAGATGATCTGAGCCCCGTCTGGCCAGACTGTGACCCCAGTGAACCCGATCAACCCCAACCTCCTCGGGCCAACATCATTCACCCGGAGCAGTGGACCACAGCTCCGGCTCAGGAGCAGGAATTTCCCGAGGTCTCCGTGGCGCCTGCTTTGGAGGAGCTGGACGATAAGGCCGAGCGGGGCGGGAAGAACCCAGAGACGGCGTGTAATCTCTACCAGACATTTCCTGAAGGCTCTGTCCCCGTGCCGGAGGGCCACAGGAACCCTTACTCCACTGAAAGTACCCTTGCCAGATCCTCTCCTCGTCACATGTCTGTCACAGAGCGTCTGCGCATGGTCATTCAAGAGCTGGTGGAAACGGAGAAATCTTACGTCAAGGACCTTGAATCCTTGTTTGAGATCTATCTGAAGCCATTACAAAGAGAAACCTTCCTCAGTCATGATGAGATGGAGTCTCTGTTTGGCAGCCTGCCAGAGATGCTGGACTTTCAGAGGGTTTTCCTACAAACCCTAGAGGAGAGGACAACTTCCTCACCAGAGTACCATGCACTAGAGACTCCAGAAAAACTCAAgAAGCTCCTCTTCTCCCTTGGTGGATCCTTCTTATACTATGCAGATCACTTTAAGCTTTACAGCGGCTTCTGTGCCAATCACATTAAGGTGCAGAAAGTTCTGgaaagagCAAAAACAGACCGGGCCTTCAAAGAGTTCCTGGAGGCGAGGAACCCCACCAAACAACACTCGTCCACCCTGGAGTCGTACCTCATTAAACCCGTGCAGAGAGTTCTGAAGTACCCGCTGCTGCTGAGGGAGCTGGTGTCTCTCACTGACCCTGAGAGCGACGAGCACAGCCACCTCACAGAGGCATTAAAGGCTATGGAGAAGGTGGCCAGTCACATAAATGAGATGCAGAAGATCTACGAGGACTACGGCACGGTGTTTGACCAATTAGTGGCAGAGCAGAGCGGCCCTGAGAAGGAGGTTACTGAGATCTCCATGGGAGAGTTCATCATTCACAGTTCAGCACTCTGGCAAAACCCTCTGCCTTCTTTGGGTCGCATGAGAAAAGACCCTGAACTCACCCTCTTCCTCTTCAAGAGAGCACTCATTTTGGTGTATCGGGAAAGCAAGTTAAAGAAAAGAATGACTTCTTCACGGCCTGGAGATCTGGATCCTTTTAAATTCCGCTGGCTCATTCCTGTTTCATCCCTCCAGGTCCGACCTGGAAATTCAGCAGGGTCAGAAAACCCTTGTGTTTGGGAAGTTGTTCACACCAAGTCTGAAGTGGAGGGACGACCAGAAATGTCCTTTCAGCTCTGCAGCAGTAACCTGGAGAACAAGGCTAATGCAGTGAGGGCAATCCGTACTCTTCTGAGAGAGAACGCCAAGCGGACAGCTCCAGTCGAGCGGCCATTTAAAGATCTAAATTCTAACTCCACCTTCCCCAGGAGAAGTCACCCAGGAGCTCTTAGAGCAAACTCCTGGCAGCGGCTCCCCCCACAGTCTGACTCAGATGAGGGCAGACTGCTCGACGGATATGCTCACTCCGAACCTCCCCTCAGGCCCTCCAGAGGCCAGAGCTCTTCTCTGAGCAAGAGATCCACATTGTGCTCCCTGACCAGCACCTTGGAAGCTCAACTCCAGAGACTGAACTTCGTAGAGGAGCCACAAGGAACGAGCCAAAGCAGTTCCAGCAGCCTTCAGGGCAGTCAGGTGACTCTGCTGGAGGACACTCCAGGCCTGGACCTCAACACCCTGCTGGCCAGGGACTACACCGTGCAAAGTTTCGGTTCGGTAGTTAATGAGGATTGTTTTTACGACACGGTCATGGGCATCCAAAAAGCTGCCATCCCCACCCTGTAGAGGAAGCTGGTGCTATAAAgattaaatgcactaaaacatgaCTATTGTGCCTTGATATGAAGAGTTTTTACACAGCCAGTTTTATATCAactctgtcaaaaaaaaacaacaactagtGAGCTGCCTGCCTGGATTCCATTTTAAAGCATGAAAAGCATTATAATCATGCTGCCTTCTTTGCTCATGTTGTAAAGCAGTGTCACATGTATTCCTATCAGAAATCATCCATAATGGCAGATGACCATAAATATACTTATTCAATAGTGagaagtttaaaataattaagatttttatttttattttcaaatgttatttgatcaaaaaaaaaaacccatttaaataaacattagtcatttatttgtaaagaaccgcttaatatattttgaaatgttatttattcctgtgatggcaaagctaaatttttgGCAGCTATTTTCTTTGGAAATCATTCcattatgctgatttggtgctcaaaaaacatttcttattaggCCTTTTTTTATcctaattattccaaacttttgtaATGGTAtataataaagatttaatttaaccaGGGTTATTGAAACTTGGATGTATgaggaaatataaaataatgaatatttaaaatataaagtatacaaaaatatatgtacaaatgGAAACCTATTGTGGACAATTTGGCCCTCGGGAGTAAAATGAGAGTTTCATCTGGGCAGTCAGCTCACTAGGTTTGGGACAGAGCCTCTATGTGGATGAACAAATGGATGATCCTGCCTTAAATTCAAAGCACAGTTTACTTTTCCAGAGCATTCCGTATGAGCTGACacatgtattattaatacacGAGCAAAGACTGTTTCACTGTAAGTGAATACTGTAGctttacatttgtgtttgcttgtttgACAAAGGCTGAAGACTGAAACAGCTTGATTTCAGCAAGCTGGGCGACTTTTGATAAACCTGAAgtctgaatataaaatattttgtctaaattatGCTTGTATATGTTTCTTACAGAATTGTTGTGTgcatttgtaatgtgttttttttaaataattattattcaaaaggCATGTTTTACAGTCCTTAAGTTAAAACGCCTAAGGTTTCTCTGTAGTTTAAGCTTGAAAATACTGTTATTTCCGTTAAGATATGAATGTTGATATGctctgttttcagttttagtccctgtaatttatttgtaaaaacatactgtatgaCTTAACTAAACATACTTTgggaaaatgattttgttttttctatttaataaagcCTGTGTTCTATAATATGTATATCATTAAAATCTTGCAAATATTTATCTTCTGCATCATTGCCATATTGAACCAGTCAAACAGAAACAAGATTTCAGTACTTGACAAGATTTCTGttcataaatgaaaacaaagataATTGCAGCCAATCAAAacgctgatttttttttttttatgattatgtaCATATACGTTTTATGTAAACTGCAATGTCTTTGGAAAAAGTTTAGAGATTAGAGATATTTCTTTTTCGATACaccaactttattttaaatgtactaggtagacagagagacatggaatagaaaaaaaatacgcTCAACTGAGTGATAATTATGAGCCTTTTTCTCTAGCTTTCTTTGTTGAGGATTTTTGTGGGCGATGTTCATTGTGTATGTGGCCTTTGATAGTACATTTCTTTGTCCGTTAGATTGAAAAGAGATGGGGGGGGTGTTGTTCTGTACTACAAAAAAGAGCTTGATTTACATTCTGAGAAGCTGTACCAGTGCTTGCCAGGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200965 lncRNA downstream 192056 4736549 ~ 4736806 (-) True G136069
TU200890 lncRNA downstream 482659 4445773 ~ 4446203 (-) True G136012
TU200839 lncRNA downstream 492871 4098935 ~ 4435991 (-) True G135975
TU201129 lncRNA upstream 51580 5018361 ~ 5018714 (-) False G136175
TU201132 lncRNA upstream 51580 5018361 ~ 5018866 (-) True G136175
TU201134 lncRNA upstream 66818 5033599 ~ 5033804 (-) True G136176
TU201141 lncRNA upstream 124519 5091300 ~ 5097061 (-) True G136180
TU201152 lncRNA upstream 145392 5112173 ~ 5119766 (-) True G136188
XM_043219772.1 mRNA downstream 702 4917807 ~ 4928160 (-) True LOC122324970
XM_043220022.1 mRNA downstream 47235 4849379 ~ 4881627 (-) True bcl11bb
XM_043219065.1 mRNA downstream 223554 4695514 ~ 4705308 (-) False lgals8a
XM_043219514.1 mRNA upstream 6267 4973048 ~ 5010559 (-) True LOC122324828
XM_043220156.1 mRNA upstream 44600 5011381 ~ 5012580 (-) True si:ch73-111k22.3
XM_043219177.1 mRNA upstream 58025 5024806 ~ 5029567 (-) False selenol
XM_043219176.1 mRNA upstream 58025 5024806 ~ 5029567 (-) False selenol
XM_043220269.1 mRNA upstream 67568 5034349 ~ 5052435 (-) False ttc13
TU200901 other downstream 355860 4564385 ~ 4573002 (-) False LOC122324820
unassigned_transcript_2443 other downstream 479407 4449383 ~ 4449455 (-) True trnat-ugu_52
unassigned_transcript_2442 other downstream 630307 4298483 ~ 4298555 (-) True trnat-ugu_51
XR_006247237.1 other downstream 1058796 3642547 ~ 3870066 (-) False nrxn3b
TU201127 other upstream 44695 5011476 ~ 5012441 (-) False si:ch73-111k22.3
TU201117 other upstream 58025 5024806 ~ 5029532 (-) False selenol
TU201118 other upstream 58025 5024806 ~ 5029532 (-) False selenol
TU201119 other upstream 58025 5024806 ~ 5029532 (-) True selenol
TU201137 other upstream 203744 5170525 ~ 5284548 (-) False LOC122324433

Expression Profile