RNA id: XM_043219772.1


Basic Information

Item Value
RNA id XM_043219772.1
length 4259
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC122324970
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 4917807 ~ 4928160 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAAGCAGCCAGAGGAAGGCAGCAAACACTACTCTGGGGACGGATCTTTACAAGCGTGGGAAGTGGAGAGAGCTCTATCTCGCAGTATCCCAGGCTTTCCCTGCCCTCTGTCTGCTCTGAAATCAACTGACAGAGTGTTGAAGTAATCAGAGCAGACCCGGCGCTGCCTAGAGCCTGTTTTCTTCTATCAAAACCAGAGCAGCCCCGTCGTTCTCAGAATCGGCTGCTTTGGATCTCTTTCGCAGTTTTTGGACCTTCTGGAGTCAAGGAGCAAAGACATGACACAGGTTGCGTCCAGAACCGGAGATATCTGAGGAAAGTGTTAGTCCAGACCAGTGTGAGGAGTTGGGAAGAGTCAGGCTGAGCACTATGACGGTTCGTGTGAAGCTGCTGGAATGTGCTGTGCTCAGCCTGACGTCCATCCACCCTGTGTCACGCTTAGGGCGCCCCTCTCGCCTACTACCTGGACGTCACGCACTTTGTGCATGTTCTTGCTGACTACACATGTGTTGGTATATTCTGGCTTTAGCAGTCAAGAGAAACAGaAGCTAGAGGAAATCTCTTCTGAACATTACCATAGCGCACCAGTGTAAGGCCTTGCGGAGCCAGTGCGGAGGAATTATCTGCTGTCAGGTCCTGCGCCGGGCTGATAGGGAAAGCAGCGCACTAAGGGCCACGGTGAGGGGGACGGCCGCAGGGGGAAGGGACCGACGATGCCGTCTTCCACCATGCAAATGTTTGCCTTTATTCTGGCGGTGCTGGGAGTCGTGAGTGCCACGGTGGCCACGCTGCTGCCCAACTGGAAAGTGAGCGCAGATGTGGGCTCCAACATCATGACTGCCATCTCGCAGATGCAGGGACTGTGGATGGACTgcacctggtacagcaccggAGTCTTCAGCTGCTCGCTTAAGTACTCCGTGTTGGCGTTGCCGGCTTATCTCCAGACTGCACGCACCACTATGGTGCTTTCCTGCATGATGGCGACAATGGGACTCTGTCTGGCCGCCCTAGGGCTGAAATGTACTCGCTGGGGTGGCAGTTATCGCTCGAAGGGACATACTGCGATTTCTGCAGGGGCTTGCTTCGTCATAGCAGGGGTGCTGTGTCTGGTGCCCGCATCCTGGTTCACCAATGAGGTCATCACGACGTTTATGGACTCCAAAGTGCCCAAAAGCAGCAAGTACGAGCCAGGGGCAGCGGTGTACGTGGCTTTCGTGTCGGCAGGATTCCTTTTAGCCGCAGGCGTAATCTTTTGCTTATCATGTCCTGGAAGAAGAGGCGGTCCATTGGATTCTGGCTCGTCCCACCCCGACAAGCCAAAACCGCAGAAGCCGAGCCAGGAGCAGCCGAACCGCGACCAACCCAAACAGCAGCACTGCGAACAGCAGAGTCAGACTGAACCTCCGGAACGAGAGGAATCGCATCGAGAGAAACTACACCAGGACAAGCTGCAAGCGGACAACCGGCAGCAAGAGAAGTCGAACCTAGAGAAGGACAAGCAGTACCTCTCTCCATCTCGAACCCGAAATCCAGACGCCAAGGCCGTCTACAGTCTGCACGACTATGTGTAAACATCTATCGAGTGTTCTTGGTTATCAGACTGCCTTTCTTTGTAAGCGGCAAAAAGAGGAGGGGAAAAGCAGGAGCAGCGGGAGGAATAATGACTTTGATGCTGTTATCAACCCTTCTCATCTGTGCTTTTGCTCACAGCAAGCGAAGCAGTGGAGGTATTTCCAAAGCCCCGGAACAGACAAAGTAAGGATTGTGAATCCTCGGGTACATGGTACAAAGGGGGCCGAGGGGTGACGTAtcataaaaaaggaaatttctTAAGCCGTCAAAGTAAGGAAAGTTCTGAAGATGCAAtggtttgaaaaaaatctgcattttataGTTGCACCATCATATCATTACTGAAACGCAAACTCTAAGAGaaccaaaattaaaaagctTGATACACACTGCTTATCTagcctagatttttttttgtctttttacagccaaaatatctagaaattctTCATTCAATCTcgttttcacaaaaaacaattcaaaattaagtgtttttacgtgatataaactaaataatctgccaatgggataagcaaaataatcttgtttttatgtttgaattaTTTCGCTTACCCTATTGGCAGATTATATGCTTGCTATAAGCAAAAAGCCACTTAattctttttctgaaaacaaaagctatttatacttgtctagaaaatccttcttgatttaagaatctAGGctagaaagcattttttgcagtgcattagGCAGTATGTGCATGCTGTTTGTAGATAATGCTGTTAATAATAGCTTGCAGTTGTGAAAGGGGGATAATCAAGCTTGCACCTGAGGATGCTTCACCCCATCAGCTGTCCATTAAATGGTGCATGTCCTTCACAAAAAGGGATTTTGACATGTCCAGTCcatatttttcaaagaatggtGATGGGGGGAGGCAGAGATCGTCTGAGGTAATGATGCTCTTTGCTTTTCCATTAGGTTCGCTACGGATGGGTGCACAGTGCTCATTTATTGCGCGCAGGCAGatacaccaacacacacacacaagcttttCTTCCCTCCCTCGTACTCCTGCTAGAAGGGTAATGGGGGCTTGCACCCAATCATCATGATGCTGTGCGTCAGTGTGTCGTGCCTGCAGGAAGTGCAGTCGGTCCTGTTCTAGGGCAAACAGGACGCAGTAACACGCTGTTCACACTTTTGTCGAAAAGTAGAACCAAGGAGACAGAAACCTCAGCGGTGGCTTCGGAGTCCCCCGCTGGGCAACAATTACACCTTTGGTCTGCGTCTCAAATCGGTCAAACCATCCGCAGTATTTTCTGATTGCTAAGCTGTTTTGGGTTACAGTCAAGCCATTGACCATTTTTTCAGAGTCAGGGGAAATAGGAAATGTTTGATATAATGTACCGCATTTGACTTGAGCTAATACTAAGTGTCATTGTCTGTGCTGTTTCCGTCGTAACGATGGTCAAGGGCTCCTATTGTCTCCAGAGAGACGCCACAGCAAGACATTTTCTGCCTTTCACTTCTGTCTCACATATAAGCACACATActgctgtttgtgtttgacATGCGTTTGCAGAATGCTTTAGAAATTGACAATGAAAGAGAGCAAcaaggcctttttttttaacaaagtgcCAATGGACCatgttttgctttattgttCATATACTGTcaaatcacctttatttatatagtacttttttctttaaatttgcTATAGTTATTTGGGTCCAAAAATCTGAGAACACTGGTGAAAATTATGCTATTTTacctttaatttgtttttataaaattcaaTTATCAAATTATatcaacaaattattattacattacaaaattatttcagtATAATTCAAGtgcaatttatatattgtactgaataaatattctGAATACTCTGAtgcttctttattttaaattatttttatttttcatgaaaaaaaaagaattcagaTTTTCATTATGGTCTAAGACGTTTGGGCAGCACTGTAAACAGTTGGATATGCCGATTGTGGCCTgaatcttattattattatcatatatgGGTTTTGTATAACCATCACATCAATACagacattttgaacattttgaaaatagcattttattttagtatttatatgTTTTCCCATGCTATTTTGttgtaaacacttttttttatttttaatcaaaaatttatcttttaagttattttattgaCCTTTGCagtgaataataaaacaattcatttcaTTACACGGTGATATACAGCAgagtgcaaaaatatttttggaatatATTTTGATGATAACAGAAATCCCTGTCCtattaaagcaaaatatattcatttatattttaaaatgttttaatgttataaCGGACATGCCTATTCAGTCCAGGtcacgtgcaaaaaaaaaaagtcacatgaaCAACTGCACGGATATTCAGAATTGGGTTTGGTTTGTTGTTTGAATGTATCTCCAGGAGTGTGTTTATATCAGCAcatgtacattatttttaagaaacagtGATCTGAAAATCTTCGATCATCATGACACGGTGAATGTTGACTACATTGAATGTTGCTTTGTGttaaattagtcattttgaaTGTTCTGTTTTGGCTTGACGAAATAAGGGCTTCATTTAGTGAATTTACAAACTGTGTGGCCAGTAACGATGTGAAACCATCAAATCCAATAAAGCACATACTTAAGCCTGTACAGTACAACAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200965 lncRNA downstream 181001 4736549 ~ 4736806 (-) True G136069
TU200890 lncRNA downstream 471604 4445773 ~ 4446203 (-) True G136012
TU200839 lncRNA downstream 481816 4098935 ~ 4435991 (-) True G135975
TU201129 lncRNA upstream 90201 5018361 ~ 5018714 (-) False G136175
TU201132 lncRNA upstream 90201 5018361 ~ 5018866 (-) True G136175
TU201134 lncRNA upstream 105439 5033599 ~ 5033804 (-) True G136176
TU201141 lncRNA upstream 163140 5091300 ~ 5097061 (-) True G136180
TU201152 lncRNA upstream 184013 5112173 ~ 5119766 (-) True G136188
XM_043220022.1 mRNA downstream 36180 4849379 ~ 4881627 (-) True bcl11bb
XM_043219065.1 mRNA downstream 212499 4695514 ~ 4705308 (-) False lgals8a
XM_043219064.1 mRNA downstream 212499 4695514 ~ 4705308 (-) False lgals8a
XM_043219063.1 mRNA downstream 212499 4695514 ~ 4705308 (-) True lgals8a
XM_043219066.1 mRNA downstream 212499 4698249 ~ 4705308 (-) False lgals8a
XM_043219769.1 mRNA upstream 702 4928862 ~ 4966781 (-) True LOC122324969
XM_043219770.1 mRNA upstream 703 4928863 ~ 4966781 (-) False LOC122324969
XM_043219514.1 mRNA upstream 44888 4973048 ~ 5010559 (-) True LOC122324828
XM_043220156.1 mRNA upstream 83221 5011381 ~ 5012580 (-) True si:ch73-111k22.3
XM_043219177.1 mRNA upstream 96646 5024806 ~ 5029567 (-) False selenol
TU200901 other downstream 344805 4564385 ~ 4573002 (-) False LOC122324820
unassigned_transcript_2443 other downstream 468352 4449383 ~ 4449455 (-) True trnat-ugu_52
unassigned_transcript_2442 other downstream 619252 4298483 ~ 4298555 (-) True trnat-ugu_51
XR_006247237.1 other downstream 1047741 3642547 ~ 3870066 (-) False nrxn3b
TU201127 other upstream 83316 5011476 ~ 5012441 (-) False si:ch73-111k22.3
TU201117 other upstream 96646 5024806 ~ 5029532 (-) False selenol
TU201118 other upstream 96646 5024806 ~ 5029532 (-) False selenol
TU201119 other upstream 96646 5024806 ~ 5029532 (-) True selenol
TU201137 other upstream 242365 5170525 ~ 5284548 (-) False LOC122324433

Expression Profile