RNA id: XM_043219777.1


Basic Information

Item Value
RNA id XM_043219777.1
length 5435
RNA type mRNA
GC content 0.43
exon number 8
gene id itpkb
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 19455804 ~ 19487350 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTGTCCGCCCCACCTGACTTCTTAGTCAAAGCATGTGATGTTTATCTTGACTTTACGAAAGGCATCGCTATTTAATCGAACGACCGAATTCATCCTGAAGAGATGGATGTTTTAATTCGCATATGGTTGCTGAAAGCACTCTACTAAAGCATGAACCAGTAGTGGATATAATATGTGAATGAGAAAAGGAGTCTGGGATTGTATTTTATTCCACATGCCAGCTTTCCTTGGTTCCTCCTAACAATGGTTGGCTCCAAAGGCCAGTGGACTTTGGATGAGTAGACCTAAATGGGAGCAAAAACGGACAGAGTCAGCCTGCCACTATGGCAGCTTATGCTCTGAACAGCCTGATAATGATGAACCCCAATAACCTGACCAATAAGAGTAGCCCTCGGACAGGAAGGCCTGTGCTCCCAGTGCCCAGTCGTTCTACATTCAGCCCAGTGCTGGGGAGCAGCGGTGGTCCCTATAGCCCCGGCAGCCTGAGCCCTGGGTCACCAGGAAAATCCTTTGTCTTCCCAACAGGTACTGGCTCCAGCTGCCAAAGGGCACCTTCACCATGTCGACGGCCAGAATCACTAGGCGTGCATGTGGGAAGTCGTGTGCGAAGACTGAGCGGGTCCGGCCTGGAGGAAGAACAGGAGAACGAAGAACGGCGTGCTGCTCAGCAACTCGAGCGGCACAAAGAACTGCAGAACGTGGAGGTGAATAAGAAGGTGGACCTGTTTGAGGCCCAAATATCGGCTCAGGCTCACAGCCGAGTGACTCAACGAAGTCCACGAATATCCAGGAAAACGGTGCCTGTCCAACTGGCCAATCTCTCCTTAAACGCAGGGGAAACACTTGTGACGCAGGACAAGGATCACTCAGTGGGGATCCCCAAAGAACTGCAAAATGGAAAGCGCTTCTCTGGCATGGAGGAGGGGCTGCAGGTCAGCGGTGAACAGAAGAACGGGGCTGACCCAAATACAGAAGAGGGCGGCCCACTTGAGAGCACATCAGCAGGAACTAAGAGCGAAGCTGACAGCTCTGCCGACAATCACTCCAGGACTTCACCAGAGTCCAACAAGTGTTCAGCATCTTGGACTGAGACATGTTTGACAAAGGAGAGAGCTGAGCCAAAAGAAACCCAGGCAGAGCCCGACGGGGTCAGTCCAGAGGTGGGCTCAATTCCAGCTGTCATTATTACAGACCACGGCATGGATGTCAGTGGGGAAGGCAAGGAGCTCCAGGTTAGTCCTCAACCTTACAGAGCTCTGAGAAagctctcttcttcttctgcctCGTCAACTGGATTCTCCTCTTCCTGGGAGGAATCAGAGGACGACATTTCCAGTGACACAGAACGGTCCCCAGCCTTCCTGCAGACACAACAGAAAGCGCATAAATCATGGAAGAAGATCAAGAACATGGTGCATTGGTCACCGTTTGTGATGTCCTTCAAGAAAAAGTACCCCTGGATCCAGTTGGCTGGCCATGCAGGCAATTTTAAGGCAGGGGCCAATGGTCGCATCCTAAAGAAACACTGTGAGTGTGAACAGCAATGTCTCGACAGGCTCATGAGAGATGTGCTAAAGCCCTATGTTCCTGCTTACCATGGAGATGTAGAGAAGGATGGAGAGAGGTACAATCAGATGGAGGACTTGCTGGCAGATTTTGACCTACCCTGTGTCATGGACTGCAAGATGGGCGTCAGGACGTATCTGGAAGAGGAGCTGACGAAAGCCAGGAAGAAGCCTAGCTTGAGAGCGGACATGTACCAAAAGATGATCGAGGTGGACCCCGATGCACCCACGGCACAGGAGCACGAACAGAAAGCAGTCACTAAGCCGCGCTACATGCAGTGGAGGGAAACCATCAGCTCCACCGCCACGCTAGGCTTCCGGATCGAGGGAATCAAGAAAGAGGACGGAACGGTAAACAGGGACTTTAAAAAGACCAAGACCCGAGAACAAGTGACCGAGGCCTTCCAAGACTTTGtcaaaggaaacaaaaacatcCTGCATTCCTATCTGAACCGACTGAAAGAGATCAAGGACACTTTGGAAATGTCGCCGTTTTTCAAAACGCACGagGTGATTGGCAGTTCTCTACTCTTCGTCCATGACAAACGGGAGCAGGCAAAAGTGTGGATGATAGACTTTGGGAAGACTACTCCGTTGCCGGAGGGGCAGGAGCTGAGCCACAGGGCCACTTGGGTGGAGGGAAACAGAGAAGACGGCTACCTCTACGGCCTAGACCACCTCATAGACATTATTTCCGATATGCTAACTTCTAAACCTCCACTAGAGTAAGAGGACTCTTCTTCTCTCCCTCCTGCACTACAGTTCAAGTCCTCGCTGGTTTCCCCTAAAGCTGTCCTAACCGATCGCCCCGTCTCACCAAAACCgaaaattagaaaaagagcGTGTATGTTTGTAAACTTGTAGATGCTGTACATATAGTGTAAATGCCAGTGTTTTAGTTCAGAAGATGTGTgaataggattttttttgcagctaGCGCTTTAACAGGCAGGTGAATCTTAAAGCCACACTCCCTTAATGTGCGTTCTTTTCAACATGCTAGTGTTACGGGAAAAGTGTAAAGCACTTACAGCTATGTTTTACTCTGTGAtcgttttaatgttttgtttttagatgctGCAGAAAAATTTgccttgttttttattttacacctggacaccatttttttccgggaaaaaaatctaaatttaaaacataacaatCGGATCGACCAATAGACGTTTGAGATATTTATGTTTACGGGATTCTAACAATATTcaattgttttacagtttttttttttacccttttaaCATAAAGTAGCgtaaaaatacatcatttataCTGAGTGCCTTTTGTAGAACAAATTCTCCCATTTGGTGGATGGTCTTATGTtgtgctttatatttaaattcttcATATTGACATTCCTTAAATTCAGTTGCCTTTTTTGTGCCTAAGTAGGGCTGGGTATCAACACAGATTCtccaaatcaatttttttttatgcaatacgATTCCGATACATTAGGAGTATacatcattttagttttaccGTCTATTCTCTCTCCGGTAATGAGAAACAACACCTTTTGGGAATCAAGCTAGAAGTCTGCAATTGATTTTTAGTCTGCTAAAAATATGATCTGGCTCTAGCAGTCACGCTGTATGTTTCTGACTCACTAATAAGATTAAGATTCATACATGAGAAAGATGTTCCTTGTCATCATTTCGTAGGACATGGCCATTTTTCTGAACTGTGACACACTGACAACTAtggtattaaaaatatgattactTTTTCAGTGTCCTTAAAGATTTAAGCAGCAGGGTGTAAAGTCGAAGTAAAGGCCCGTCTGTTTATTGTAAGCGTGCACTTCAGTTTTGTTGCGtgctgctttaaatgctcaaaaatggattctgattggctctcAACAATTTTTATCATTCATCGGCTGGAAAAAGTACTTTCGAAAGTTATACCAAGGACATTTTTTCTCTATCGTTACAGTTTTGCAGCAGACTCTGCTATACGTTTACATTTCGAAcgatttttacaattaaaatgattttttttgcgtTATCCTTGCTGTGACTTTAGACAGTGCCATCTGTAGGATAGTGCGATGCAATATTACAAATTGAATCAGAATCATTCAAATGAACATCATGATTAATTggaaaatctttatttttactcaGCCCTATGCCCAACCAGCCTAAAATAAGAAACGCGTGCCAAGGTTTATTCTCAGGAAGTGGCTCCAATTCAAGAAGACTTTAAATCAGTCTCATTTTTGTCTTTGAAACAAGCGAGTGCTGCAAACGTCGCTATAGTGCCCTTGTctatttgcttaaaataagaaCTTTTGTTCAAGGTAAAATAACATTGCTTTAAATACAGACTGTCACCTTGCACATCTGTTGACCAAAAATTACAACCATTCCACACAAGTTCAAACAATGTGAATAGTCACGAGAGCCTTAAGTAACGTTGTTCTTCCTTTGAAAAGTGCCTGAAGGCGCCGCTCGAATGCTGACTCGCCACTCTTCAGAGCGCATCATGTTTGAGAGAGGTGATTGTTGTTTGCATGACTATTTGCCATGCAAATGAACCATCCCTGCATACCCCCAAACAATGAGATAATGCTCCAAGCAAAATATCGCCGGAgataaaaactaatttgttgGTCAGTATGGAAACCATGTGCTGACACCAGCATAAACGCAATCAGTGATTAGTGGTTGTTGATTTAGCCCAGAGCGAGGAACACCTAGGGCAGACCTATATGTCGGGACGTCAACGCAGAGAGGCAGAGAGGTTATCGAGAGGCCTCCAACCAAATGTCACCGCGTGTTTTTAcccatcatttatttatgatgaGATTTCGTTGTCGTTAAATGACCTTTTACGAATGCAAAAGGGAACAGAGAGGACAAAAGGTTAGCGGGCGGTGTGGAAACGTTTTTCAAGTCGCTGTCCCACAGCCACGTTTCCCTAAACATGCTTAAAATGGGTAGGAAAAATGAAATAGGTCAAATCATAGCTGCTGTAAGTGATTTTTTAATAGGCCTAACGCGTGTAAACTGTCCTCGCTACCTGACTATGGGAGAAATAATTCTGGTTCTGTAATCAACCACAAAATTGCTGCTGGTGagccaagagagagaaaatatctaattatatgaaaaagaaatacagcCCTAAAAATGTGGctcatataaaaacatacatgacACAATGAAACGCTTGCTAGGAAAAATAACACTTCTCTCTTCTGGCAGTGCAAACAGCCACGGAAACGCTGTTTGTTAGTCAAGAGAGAGGAAAActtctttaatatttgttttcgaGAAACATACCTCCCGCTATATTCACGGTGTGTCACTAACctgatgaagaaagaaaaaggagacTTGTTTGGAAaccaaaaatacttttaaatacaatGGCTTACAGCAGCTTTAATCGGGTCTAAGAGGTTTCgggcttatttatttttttaccgaAATTACGTTTTTTCCAAAGTAAATCTTAAAGCCTTTCTCCCCACACAAACTTAAAAATTGAAGTAGGGCTTCCCCTGCTGTTTATGGTGCTGTATTACAgagaacaaacaaaactgaCCCAAGTCCTTCTTCTTGCCCtgaatgttttacatttcatgCCATTTGTGAGAGGTCAAAAACTGTGGGAATTTCTAGTGGTGTCATAcgtatacttatatttatattttgttacattttgcaCAAGAACACTAAATGTAGCtgcattgttttttcttttcttgtttgtttggctTTACCTCCCATGTCTTGGTGATATAGCGGTTCACTGTAATGTAAGCTAAGCTCACTgctgtgtaaaaaaatgtgcaaatgtcTTCAGAGTGTGctctgtctctttaaaaaataaaactttgaaaCCAG

Function

GO:

id name namespace
GO:0008440 inositol-1,4,5-trisphosphate 3-kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207027 lncRNA downstream 7092 19445828 ~ 19448712 (-) True G140175
TU206999 lncRNA downstream 114744 19335079 ~ 19341060 (-) True G140152
TU206741 lncRNA downstream 155511 19298269 ~ 19300293 (-) False angel2
TU206702 lncRNA downstream 205014 19224380 ~ 19250790 (-) True G139940
TU206658 lncRNA downstream 295647 19159838 ~ 19160157 (-) True G139903
TU207123 lncRNA upstream 250676 19736940 ~ 19737992 (-) False G140240
TU207125 lncRNA upstream 250676 19736940 ~ 19737817 (-) True G140240
TU207124 lncRNA upstream 253435 19739699 ~ 19740363 (-) False G140240
TU207139 lncRNA upstream 314258 19800522 ~ 19801668 (-) True G140248
TU207134 lncRNA upstream 314401 19800665 ~ 19801668 (-) False G140248
XM_043219807.1 mRNA downstream 151992 19298234 ~ 19303812 (-) True angel2
XM_043219739.1 mRNA downstream 192852 19262324 ~ 19262952 (-) False LOC122324949
XM_043219738.1 mRNA downstream 197106 19256688 ~ 19258698 (-) True nsl1
XM_043218875.1 mRNA downstream 199532 19254734 ~ 19256272 (-) True batf3
XM_043219538.1 mRNA downstream 222987 19220917 ~ 19232817 (-) False adat2
XM_043219789.1 mRNA upstream 27816 19514080 ~ 19516523 (-) True si:ch211-245h14.1
XM_043219788.1 mRNA upstream 27816 19514080 ~ 19516509 (-) False si:ch211-245h14.1
XM_043219790.1 mRNA upstream 27816 19514080 ~ 19516500 (-) False si:ch211-245h14.1
XM_043219808.1 mRNA upstream 56113 19542377 ~ 19554327 (-) True slc30a2
XM_043219785.1 mRNA upstream 115268 19601532 ~ 19615201 (-) True trim54
TU206747 other downstream 151836 19300376 ~ 19303968 (-) False angel2
TU206746 other downstream 152956 19300376 ~ 19302848 (-) False angel2
TU206721 other downstream 192926 19261466 ~ 19262878 (-) True LOC122324949
TU206720 other downstream 199549 19254810 ~ 19256255 (-) False batf3
unassigned_transcript_2507 other downstream 379686 19076046 ~ 19076118 (-) True trnaf-gaa_119
XR_006247245.1 other upstream 115268 19601532 ~ 19615202 (-) False trim54
TU207099 other upstream 571360 20057624 ~ 20059603 (-) True G140227
TU207100 other upstream 571360 20057624 ~ 20058499 (-) False G140227
TU207179 other upstream 575338 20061602 ~ 20062977 (-) True G140277
TU207486 other upstream 1487140 20973404 ~ 20975750 (-) False crnkl1

Expression Profile