RNA id: XM_043219785.1


Basic Information

Item Value
RNA id XM_043219785.1
length 1609
RNA type mRNA
GC content 0.47
exon number 9
gene id trim54
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 19601532 ~ 19615202 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGTTTGGACAGTAACCCAAGCCAGTACAAACAGCCCAAATATATCCACAGTCACTCTGCGGTTGGGGATTGAGTGGGCATCTGGATGCAGACTGTGGCTAGAGAACAGACCAAAGAataacagaaggaaaaaaaagtttaggagCTTTGTTTTATCTTTGTCTGGGATGAACTTTACTTTGGGCTTCAAACCAGCGATGGGAGATTCAAGTTCAGTGGAGAACTTAGAGAAACAACTCATTTGCCCCATCTGTCTGGAGATATTCACCAAGCCTGTGGTCATCCTACCCTGCCAGCATAATCTCTGCAGGAAGTGCGCCAATGATGTTTACCAGGCCTCCAACCCTCTTTGGCAAAACCGTGGCCCTGTGTCTGCGGGGGGACGTTTCCGCTGCCCGTCATGTCGTCATGAAGTGGTATTGGACCGGCATGGAGTATATGGGCTTCAGAGGAACCTGCTAGTGGAGAACATCATTGATATCTACAAATCAGAGTCTACCAGGCCACTCCTGCCCAAAACAGAGCAACAGCAGCTGATGTGCGACCAGCACGAGGAGGAGAAGATCAACATCTACTGCCTCACCTGCGAGACACCGACATGCTCCATGTGCAAAGTGTTCGGGGCTCACAAAGACTGTGACGTGGCTCCGCTGCCAGACATTTACAAGAGACAGAAGACGGAGCTGAGTGATGCCATAGCCATCTTGGTGGCCGGAAATGACAGAACACAAGCCCTGATATCACAGATGGAGGATATTTGTAGGACAGTCAAGGAAAATGGTCATCGGCAGATGCAGTACATCTCAGATAAGTTTGATGAACTTTACGCCATCCTAGAAGACCGCAAAAGGGAACTAATAGAGACTGTTGGCCGTGAGCAGGACCAAAAACTGAGCCGTGTGCGCTCCCTCATCCGTCGCCACGGAGATCACTTGGAGATGTCTGTCAAACTTGTGGAGACAGCCATACAGTCCATGGAAGAACCTCAAATGGCTGTGTTCCTGCAGAGCGCAAAGGAAGTGTTCAAAAAGATCACAGACACTGCCAAGGCTTCCAACATTGAGCGGACGGAGGCGGGCTACGAGAGCATGGCCCACTTCATCATCAACACGGAGAACGTGGCCGACACGCTGAGAGGCATCGACTTCCAAACAGGTGAAGATGGGGAAGACAGCGGTGATGAAGGCCCTGAAGACCTGACCACCTCACCTGGTCAGGCTGGTGAATCAGGGAGACGcatataacttatttttaaaccCAAGGGTATTTCCTGTGCTGACTTAAGAGAGACTATGAGGAGGTTTTCTTTAATCCTTTCAACATGGCGAGAGCTTCTTTCATCTGGTATTTTGTGTTCCTAAAAGTCTGAGCTATAGTTCAGTAAGAATTACAAATTTCTTCATAGCTTCTACATCCTGGATGTTCATAACGATTCTATGTATGATGctatttttggtgttttttttaatcttagaATGAGCTGAGGACATAggaaatctgaaaatatttgtggtttgttcaagtgtgtgtgtgtgtgtgtgtgtgtgtaaatcaccatttaacatttaaaggggtcagcaatgtttttgaaagactcttatgctcaccga

Function

GO: NA

KEGG:

id description
K10653 TRIM54, MURF3; tripartite motif-containing protein 54

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207027 lncRNA downstream 152820 19445828 ~ 19448712 (-) True G140175
TU206999 lncRNA downstream 260472 19335079 ~ 19341060 (-) True G140152
TU206741 lncRNA downstream 301239 19298269 ~ 19300293 (-) False angel2
TU206702 lncRNA downstream 350742 19224380 ~ 19250790 (-) True G139940
TU206658 lncRNA downstream 441375 19159838 ~ 19160157 (-) True G139903
TU207123 lncRNA upstream 121739 19736940 ~ 19737992 (-) False G140240
TU207125 lncRNA upstream 121739 19736940 ~ 19737817 (-) True G140240
TU207124 lncRNA upstream 124498 19739699 ~ 19740363 (-) False G140240
TU207139 lncRNA upstream 185321 19800522 ~ 19801668 (-) True G140248
TU207134 lncRNA upstream 185464 19800665 ~ 19801668 (-) False G140248
XM_043219808.1 mRNA downstream 47205 19542377 ~ 19554327 (-) True slc30a2
XM_043219789.1 mRNA downstream 85009 19514080 ~ 19516523 (-) True si:ch211-245h14.1
XM_043219788.1 mRNA downstream 85023 19514080 ~ 19516509 (-) False si:ch211-245h14.1
XM_043219790.1 mRNA downstream 85032 19514080 ~ 19516500 (-) False si:ch211-245h14.1
XM_043219776.1 mRNA downstream 114182 19455804 ~ 19487350 (-) True itpkb
XM_043219796.1 mRNA upstream 1560 19616761 ~ 19628027 (-) False dnajc5ga
XM_043219797.1 mRNA upstream 1560 19616761 ~ 19628027 (-) False dnajc5ga
XM_043219798.1 mRNA upstream 1560 19616761 ~ 19628027 (-) True dnajc5ga
XM_043219773.1 mRNA upstream 13585 19628786 ~ 19647088 (-) True cad
XM_043219787.1 mRNA upstream 33987 19649188 ~ 19651129 (-) False LOC122324982
TU206747 other downstream 297564 19300376 ~ 19303968 (-) False angel2
TU206746 other downstream 298684 19300376 ~ 19302848 (-) False angel2
TU206721 other downstream 338654 19261466 ~ 19262878 (-) True LOC122324949
TU206720 other downstream 345277 19254810 ~ 19256255 (-) False batf3
unassigned_transcript_2507 other downstream 525414 19076046 ~ 19076118 (-) True trnaf-gaa_119
TU207099 other upstream 442423 20057624 ~ 20059603 (-) True G140227
TU207100 other upstream 442423 20057624 ~ 20058499 (-) False G140227
TU207179 other upstream 446401 20061602 ~ 20062977 (-) True G140277
TU207486 other upstream 1358203 20973404 ~ 20975750 (-) False crnkl1
TU207613 other upstream 1583509 21198710 ~ 21278741 (-) True G140616

Expression Profile