RNA id: XM_043219786.1


Basic Information

Item Value
RNA id XM_043219786.1
length 1338
RNA type mRNA
GC content 0.42
exon number 6
gene id LOC122324982
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 19649188 ~ 19651129 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

accaACATACTCTAGGTGACAggtcaaacaaaaaacattgtgaCTGGAAACTAACAGATGGGGCTCTGACACATACAGAACTACTAGAACAAGCTGTACCTGAGATCCAAACCTACTGAAACCTGCTCAAGGAGAAGAACCACCAAAAAAGCTAGTTTAAGTGAAAACACAGGAGAAATAATTACTTTCTGTGCCTACTGGACCAGAGACATGCACAACCAGGTTATTCAGAGCCTTGAGAAGGTACTGCACAACCTCTGGTTCATAAAAGAACTTTCTGAGCTCATTCTTGGAGCAgccttttacttttttgaagCCTTTGTTCGACTCTTTATTCCACACTGCAAGAAAAATGTTGAAGGAGAGATAGCCTTGGTGACTGGAGCTGCGAATGGCATTGGAAAGCTGATTGCGAAAGAACTTGGCCACCATGGAGCAACATTAGTCTTATGGGATATCAACTCAGATGCACTGGACAAAACAGCCAGAGAATTAAAGCAAGTATTGGATGTCCGTGTGTATGCCTACACCTGTGACTGcagcaaaagaaatgaaatttaCAAAGTTGCTGAACtggTTAAAAGGGAGGTTGGAGATGTGTCAATTTTGGTAAACAATGCAGGCATGGTAACAGGCAAACATACTTTCGTAGAAGCCCCTGACAGTCTAGTGGATAGAACACTAAGGGTCAATGTTGCAGGTCATTTCTGGACTTACAAGGCATTTCTCCCAGCTATGTTGCAACAAAATCATGGGCATCTGGTCTGCGTGGCATGCCATGGAGGGTTGTTTGCAATGAATGGCCTTGCAGATTATTGTGCAAGCAAGTCTGCAGCAGTGAGCTTTGCAGAATCTGTTGCATTGGAGCTGCTTGTCCTTAAAAAGGAAGGAATCAAAACAACAATAGTGTGTCCCTatctaataaacacaaaaatgtttaggGGATGTCAAACAAAGAGACCATCCTTTCTTCCAATCTTGGATCAGAGACATGTAGCAAAACAAATTGTGGATGCAATACTACAGGAAAAGACGTATTTGTTGTTACCCTTAAGTCTACATTTCTTGATGGCACTAAAGAGTCTCATGCCTGCCAAACTGGGCATCATCTTTGTGAACTTCATTGGTGGGATGGATCTGATGGATCACTTCAGGGGGGTTCCTGTACCCATCATCAGCTACAAAAGCCTCAGCGCCAACGAAATGACAGTGTCAGTGATCCACAGACCACCCTTATCTATTACGACTAAAAATCACCAGTGAGCTTAAATGCATGATCAGTCTATACTCAGTCTATAAAATTATTGCAGAGctgtgaataaatacatttttccttaA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207027 lncRNA downstream 200476 19445828 ~ 19448712 (-) True G140175
TU206999 lncRNA downstream 308128 19335079 ~ 19341060 (-) True G140152
TU206741 lncRNA downstream 348895 19298269 ~ 19300293 (-) False angel2
TU206702 lncRNA downstream 398398 19224380 ~ 19250790 (-) True G139940
TU206658 lncRNA downstream 489031 19159838 ~ 19160157 (-) True G139903
TU207123 lncRNA upstream 85811 19736940 ~ 19737992 (-) False G140240
TU207125 lncRNA upstream 85811 19736940 ~ 19737817 (-) True G140240
TU207124 lncRNA upstream 88570 19739699 ~ 19740363 (-) False G140240
TU207139 lncRNA upstream 149393 19800522 ~ 19801668 (-) True G140248
TU207134 lncRNA upstream 149536 19800665 ~ 19801668 (-) False G140248
XM_043219773.1 mRNA downstream 2100 19628786 ~ 19647088 (-) True cad
XM_043219796.1 mRNA downstream 21161 19616761 ~ 19628027 (-) False dnajc5ga
XM_043219797.1 mRNA downstream 21161 19616761 ~ 19628027 (-) False dnajc5ga
XM_043219798.1 mRNA downstream 21161 19616761 ~ 19628027 (-) True dnajc5ga
XM_043219785.1 mRNA downstream 33987 19601532 ~ 19615201 (-) True trim54
XM_043220540.1 mRNA upstream 175971 19827100 ~ 19849045 (-) True LOC122325502
XM_043218919.1 mRNA upstream 418277 20069406 ~ 20071277 (-) True LOC122324484
XM_043219894.1 mRNA upstream 522419 20173548 ~ 20229821 (-) True rcan2
XM_043219895.1 mRNA upstream 522419 20173548 ~ 20195473 (-) False rcan2
XM_043219892.1 mRNA upstream 579846 20230975 ~ 20242311 (-) True LOC122325054
XR_006247245.1 other downstream 33986 19601532 ~ 19615202 (-) False trim54
TU206747 other downstream 345220 19300376 ~ 19303968 (-) False angel2
TU206746 other downstream 346340 19300376 ~ 19302848 (-) False angel2
TU206721 other downstream 386310 19261466 ~ 19262878 (-) True LOC122324949
TU206720 other downstream 392933 19254810 ~ 19256255 (-) False batf3
TU207099 other upstream 406495 20057624 ~ 20059603 (-) True G140227
TU207100 other upstream 406495 20057624 ~ 20058499 (-) False G140227
TU207179 other upstream 410473 20061602 ~ 20062977 (-) True G140277
TU207486 other upstream 1322275 20973404 ~ 20975750 (-) False crnkl1
TU207613 other upstream 1547581 21198710 ~ 21278741 (-) True G140616

Expression Profile