RNA id: XM_043219788.1



Basic Information


Item Value
RNA id XM_043219788.1
length 1097
RNA type mRNA
GC content 0.43
exon number 7
gene id si:ch211-245h14.1
representative False

Chromosome Information


Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 19514080 ~ 19516523 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GTATCAATTTAGTTTTAGCAACAATAACTTTCGCTTTCAATACACCAGAAATGAGCAGCGCGGGGTCTTCCTGGATTTCGTGGATGAATCCGAACAACTGGACGATCACCAAGGAAAAGAAGGGCAGGGCTCTTCGACAAAAAATCCATGAAATCTCTCAGTCTTCTGTCCTAGATGAGGCAGGCATTGAAGACGCTCAGATCCTTACTTTGACTAGAGAGGATCTGAACGAGCTTTTTCCTGGAATTAAGAACTTTCAGCTCAGAAGGACGGTTATGACACTAATAACAGGAACAATGAAGGATTCACTTAAACATGGCCCAGAAACATTGGCTGGTGCCATGAAgcatttaatgcacaaaaacGATGATGCTGCTGTACAGGAAGTCTTAAAGGAGTCTCTTCGAGCGTTTAAACAAATGGAGGATCAGCTTAAAGCAGCACAGGCTTCGTTGAAACCATACATTGAGGTCTTGACTAGTCTCTCCGAGGCACCTGCTAGACCAGAGGACTTGTCAAACAAGAGAACATTTCCAAACTCATTCCCAGCAGATACAAACTCTACAACTGTGCAGACTCGCAGGTTTGAGCCTTTGGTCAGAGTGCATCCATTTGTTTGTGGTCGAACCTTGGGAACGGACAAGCAAATTCTTTCCCTGCTCAGGGGAGTTAAAGAGACTAATTTATTGGACTGTCAGTTGATACTGGCCTTCAATCCTGTGACTTCACGAGCTGGAACTGACACAGAGGAAGCATTAAAGAAAATTCCAGCTGATAAACCAGCAGTACTGGTGACAATGCACCATACCTTCAACCCTGCCTACACATGCCCCAGTGTAAATACATCATCTCAATTGAACAATGTGGAACACGTTAATGTGCTCTTCCACGACTCTCATCACGGTCTTCTTAGGTGTCCAACAAATGAACATGCAATTGCCAAACTTCAGTCGGTCTTAAACCAATACATGTAAACAGTCTTGCTTCAAACGCTTTAACTGTCAATCACTGAAAATGACACTGCCATGTATTTATGCTGTATGATCATAtgagaagacaaaaacaacaagccagctaataaacaactaataaaCCGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU207027 lncRNA downstream 65368 19445828 ~ 19448712 (-) True G140175
TU206999 lncRNA downstream 173020 19335079 ~ 19341060 (-) True G140152
TU206741 lncRNA downstream 213787 19298269 ~ 19300293 (-) False angel2
TU206702 lncRNA downstream 263290 19224380 ~ 19250790 (-) True G139940
TU206658 lncRNA downstream 353923 19159838 ~ 19160157 (-) True G139903
TU207123 lncRNA upstream 220431 19736940 ~ 19737992 (-) False G140240
TU207125 lncRNA upstream 220431 19736940 ~ 19737817 (-) True G140240
TU207124 lncRNA upstream 223190 19739699 ~ 19740363 (-) False G140240
TU207139 lncRNA upstream 284013 19800522 ~ 19801668 (-) True G140248
TU207134 lncRNA upstream 284156 19800665 ~ 19801668 (-) False G140248
XM_043219776.1 mRNA downstream 26730 19455804 ~ 19487350 (-) True itpkb
XM_043219777.1 mRNA downstream 27816 19455804 ~ 19486264 (-) False itpkb
XM_043219807.1 mRNA downstream 210268 19298234 ~ 19303812 (-) True angel2
XM_043219739.1 mRNA downstream 251128 19262324 ~ 19262952 (-) False LOC122324949
XM_043219738.1 mRNA downstream 255382 19256688 ~ 19258698 (-) True nsl1
XM_043219808.1 mRNA upstream 25868 19542377 ~ 19554327 (-) True slc30a2
XM_043219785.1 mRNA upstream 85023 19601532 ~ 19615201 (-) True trim54
XM_043219796.1 mRNA upstream 100252 19616761 ~ 19628027 (-) False dnajc5ga
XM_043219797.1 mRNA upstream 100252 19616761 ~ 19628027 (-) False dnajc5ga
XM_043219798.1 mRNA upstream 100252 19616761 ~ 19628027 (-) True dnajc5ga
TU206747 other downstream 210112 19300376 ~ 19303968 (-) False angel2
TU206746 other downstream 211232 19300376 ~ 19302848 (-) False angel2
TU206721 other downstream 251202 19261466 ~ 19262878 (-) True LOC122324949
TU206720 other downstream 257825 19254810 ~ 19256255 (-) False batf3
unassigned_transcript_2507 other downstream 437962 19076046 ~ 19076118 (-) True trnaf-gaa_119
XR_006247245.1 other upstream 85023 19601532 ~ 19615202 (-) False trim54
TU207099 other upstream 541115 20057624 ~ 20059603 (-) True G140227
TU207100 other upstream 541115 20057624 ~ 20058499 (-) False G140227
TU207179 other upstream 545093 20061602 ~ 20062977 (-) True G140277
TU207486 other upstream 1456895 20973404 ~ 20975750 (-) False crnkl1

Expression Profile