RNA id: XM_043219796.1


Basic Information

Item Value
RNA id XM_043219796.1
length 2731
RNA type mRNA
GC content 0.41
exon number 5
gene id dnajc5ga
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 19616761 ~ 19628027 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTAATAATCAAGCGCGTCCTCGGAGCTCTCTACGCTTTCAAGGGAGGACATGCGGCGATAGCAATGAGGAGCTGTACATAGGATATCTAAAGAACCATTCGGCCGAGTCCTCTATGATTCAGCCAgttaattatatcatattacCACCCAGTTCAAGCATTGAATCATGGCAGACGCCAAGCCACCCTCTGACAGGCCTCAGAGGAAAATGTCCACTACAGGGGACAGTTTATACAAGGTGCTGGGACTGGAGAAAGGGGCCACAGCAGAGGACATTAAAAAAGCCTACAGaaaactGGCTCTGAAATACCATCCAGATAAGAATCCAGACAACCCCGAAGCCGCTGAAAAATTCAAAGAAATCAACAATGCCAACTCAATCCTCACCGATGAGACCAAGCGCAAGATCTACGATGAATATGGTTCCATGGGGCTCTATGTGTCCGAGCAGTTTGGAGAAGAGAGTGTCAAATACTATTTCCTCATGTCGAAGTGGTGGTTCAAGGCTATGGTCATGTGCTGTGCCGTCTTCtcctgttgctgctgctgttgctgctgctgtttctgCTGTGGAAAGTGCAAACCACCAGAGGAGGACGAGAACTACCAGTACGTGGACCCAGAAGACCTGGAGGCCCAGATCAAAGCAGAGCAGGATGGAGGAGgcTCAAATGTCCCTATTTTGATCCAGCCCAGTTCCACCGTCAACACCTCAGAGTCTACGCATTTCGCAGCCAGCCAGTCCACGTACAACACCCAGAAATGAGCCACCTGCCTGATCCTGGTCCCCAGTTATTACTGAGGGGGTCCTGCTGATGGACTCTAAGGCCCCTGATGTAGTGTGCTGACGGCAGGGCATCACGGCACCAGGACTAAACTGTGCCACTGCGCCATACCCTGACTCTGACCCACTGGAATCGAGTGGCAGTTTGCCAAAAGACAAGGAAGCCTCTGCCAATCTCATCTGTGTCTCCATTGgtgtgtatgtctgtctgttAGTATATAACTACAcgttcatttcaaaataatatagcTATGAGACTGGTGCCACTGGGCAGTGCTCCAGGTGGGAAGTGGGTCTTACTTTggggtgtctttttttttttttttttttttttgggttctggctatttattaaatttttttttttaactttttttatgtgttagAAGCATGGATGTGAGTGGAATGAACATGTGAGTGCATGCAAAGCAATAACAGCATGCCACTACTATACAGCATAGGAACGTGCAAGAACCTCTCCCACTTATCTTCATCCAAATGCTGAgccacaactttttttttttttttttttttttttttttttttttttgcttctttagaTGGCAATGTTTTCCGTTCTCAAGTTTGCAGTCATCTGTTACATCTGCATTATATTGCATTTCGTTTTAAGATCAAAGCGGTCAATCGCACGCAAATGTCAAGACATGGCTGTGCAGCGACTTTTTTCTGACCAAAGCGAAGGCGGACTTCTCAAACGTCAGCTGATGCGCTTGTGTGCAATGGTCGCATATTTCCCTAAAATCAGAACACTTGAATATGCTGGTGAAAGTTTTTTCTATGCACTTTTTTTCCACTACCTTCATTGGAGGCTTCTAATGCAAATCTAATGGCTTGAGCCCTTAAAAGTACTTCACTACTGCAAAAGCGAGAATATCTGTAAATGTgaagttttaatttgttcaaGGGGCTGTAACGGGATCGACCCTATTTTTGGTGAACGCTATGCCAAATCGAGCAAGCCTATGCTTTCTTTGTGCTCTTAGGACATATGATGACGAAacgcaaatatttttaatgatcttatttatttttaatatatcagaATTGAGATTAATGTGTATGACTGAGTGAAACGATGTACTGTGTAAACTTGATTTCAAAATTTGGATCTGCAAGAGCCTCATGATTTTAGCAATAAGGAAATGCCCGTTGTGTTAAATGTGAAGGACTCAAAATAGTCTAGTCAGGTTACTGTTAGAAGCACTATATTAGAGTTAGTACATTAGATGCCAAATGTTTTCCTTGTAAATTGTTGTTCCAAATGCAATAGTATATACATGGATTGTACACCATTTTGTTTCTGTGCGCGAaaagaaatgtatgtaataatttCAAGTAGTATATTCTCATCTGTCCGTTCTGGTTGTCATTTTGGGGGGCATTTTCTTATAGCAAAGAAGTTCTCTTTTATTCCGTAAAAACTGGATGGTACTTTCAGAGAATAAACttgccaaaagaaaaatataaagccAGACATTCATTACAAAGCATTGGGATATGATCCGCTTCCAAACCAGCTGTTActttatttctgatttttatttttatttttattttttccagtggTACATTTCCATGCTCACTGGGTCACTTAATTTAATTGCACAAGGCCCGTTTCTgcaatcaacaaaaaaaatgttggcaCTTGTTTGGGGTGCAAACGATAACTatgattttaaagcatttcaccAGTGCACATATTAAGTTTTATGATGCTATGTGTAATAACCTGTTTGAGGGGCGGGGGGGGGGAGCCAAGTCTGGTCTGAATTTACCAACAGCCAAAAAGGATGCAAGAACCACAGAAGAACGCATTGCTACTTTCCTCCTGTTTTTATTCGACATGGTTCGTTATGCATCACATATTTCATTGTCTGTTTATATTATTGAATCagaactaattaaataaatggggATTTGTAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207027 lncRNA downstream 168049 19445828 ~ 19448712 (-) True G140175
TU206999 lncRNA downstream 275701 19335079 ~ 19341060 (-) True G140152
TU206741 lncRNA downstream 316468 19298269 ~ 19300293 (-) False angel2
TU206702 lncRNA downstream 365971 19224380 ~ 19250790 (-) True G139940
TU206658 lncRNA downstream 456604 19159838 ~ 19160157 (-) True G139903
TU207123 lncRNA upstream 108913 19736940 ~ 19737992 (-) False G140240
TU207125 lncRNA upstream 108913 19736940 ~ 19737817 (-) True G140240
TU207124 lncRNA upstream 111672 19739699 ~ 19740363 (-) False G140240
TU207139 lncRNA upstream 172495 19800522 ~ 19801668 (-) True G140248
TU207134 lncRNA upstream 172638 19800665 ~ 19801668 (-) False G140248
XM_043219785.1 mRNA downstream 1560 19601532 ~ 19615201 (-) True trim54
XM_043219808.1 mRNA downstream 62434 19542377 ~ 19554327 (-) True slc30a2
XM_043219789.1 mRNA downstream 100238 19514080 ~ 19516523 (-) True si:ch211-245h14.1
XM_043219788.1 mRNA downstream 100252 19514080 ~ 19516509 (-) False si:ch211-245h14.1
XM_043219790.1 mRNA downstream 100261 19514080 ~ 19516500 (-) False si:ch211-245h14.1
XM_043219773.1 mRNA upstream 759 19628786 ~ 19647088 (-) True cad
XM_043219787.1 mRNA upstream 21161 19649188 ~ 19651129 (-) False LOC122324982
XM_043219786.1 mRNA upstream 21161 19649188 ~ 19651129 (-) True LOC122324982
XM_043220540.1 mRNA upstream 199073 19827100 ~ 19849045 (-) True LOC122325502
XM_043218919.1 mRNA upstream 441379 20069406 ~ 20071277 (-) True LOC122324484
XR_006247245.1 other downstream 1559 19601532 ~ 19615202 (-) False trim54
TU206747 other downstream 312793 19300376 ~ 19303968 (-) False angel2
TU206746 other downstream 313913 19300376 ~ 19302848 (-) False angel2
TU206721 other downstream 353883 19261466 ~ 19262878 (-) True LOC122324949
TU206720 other downstream 360506 19254810 ~ 19256255 (-) False batf3
TU207099 other upstream 429597 20057624 ~ 20059603 (-) True G140227
TU207100 other upstream 429597 20057624 ~ 20058499 (-) False G140227
TU207179 other upstream 433575 20061602 ~ 20062977 (-) True G140277
TU207486 other upstream 1345377 20973404 ~ 20975750 (-) False crnkl1
TU207613 other upstream 1570683 21198710 ~ 21278741 (-) True G140616

Expression Profile