RNA id: XM_043219845.1


Basic Information

Item Value
RNA id XM_043219845.1
length 2237
RNA type mRNA
GC content 0.41
exon number 11
gene id pla2g7
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 18325927 ~ 18331052 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGGCACAAAGGCAGGGTTGTGGTTTCAGTACGAAGCGTTGTTTCAACGAATCATTCGCTTAGGAGATTTGTTTCACAAAAAGACTTTAACAAAACAAGTCGAGACATTTTTCGCACGGATCCAAATTCAGCGGGATCCGCGACAGTGACACATATGCATCCAGTCGCGGTCAGGGTGAGGCTCCGCCTGCTCAGCAGGGACTTCAGCCGAGTCTTTATGTAGTCCTGCTACCGTCGATGTATTTTGTCAGCAGACTCGTTCAGCTGACTCTGGTTAAGAAGATATATGAATGGTCAAAGACAACGTCGGgtttaaaGTACATTCCTAAGTGGAACTGGTTGGCTGTTTTCACAATGGGTAATTCATGCGCGCACAACACTATGAGTATCCCGCCAGGAAAAGGACCCCACCAGGTGGGATGCACAGACCTGATGGTGGGCCACACAGTCCATgGTACGTTTTTGAGACTCTACTATCCGTGTCAAGCGTCTGAGAGTCCTCAGCGGCCAGACTGGGTCCCGTGTAGGGAGTATTTCAATGGCCTCGCAGACTTTATGAAGATGAACAGAGCGCTCAGTGAAAGGATTTTTAACTACCTTTTtgGGGCTTGTAAAATCCCAGCAGCCTGGAATGCGTCGTTCAAACCAGATGGGAAATATCCTGTTATTATTTTCTCCCATGGACTGGGAGCTTTCAGGACATTGTATTCGGCCATATGTGTTGAGTTGGCGTCACAGGGCTTTATTGTTGCGGCCGTGGAGCACAGGGATGAATCGTCTTCTGCAACTTTTTACTTCAGAGAGCATAGTGAGCCAGGAACAAAAAAGCATCCGTCATGTGACATAGCCAAGCCTGTGTCTGATAACCTGGAGGAGGTTTGGATGTACTACAGGCCATTGAAAACGGGCGAGAATGAGTTTCCTCTAAGAAACAAGCAAGTGAAGCAAAGAGCAGATGAATGCATCAGAGCCTTAGACATCCTCTTTGACATCAATTCAGGAAAGTCTGTGGAAAATGTCTTGCAATGTGACTTTGATTTGTCAACAATGGAGAATTCCATGGACTTGTGTAGAATAGCGATTATGGGACATTCCTTCGGAGGCGCGACGGTGATCGAATGTTTGTGCAAGGACGTCAAATTCAAGTGTGGTGTGGCACTGGACACCTGGATGTTTCCTCTGGACGAGGAGATCTTCCCAGGAGTAAAGCAGCCAATCTTTTTCATAAACTCTGAAAAATTCCAGTGGATTGGGAATATCATCCGCATGAAGAAACTGGACTCTGCTATCTTTTCTAGAAAAATGATAACCATCAAAGGGACGGTCCATCAGAGCTTCCCAGATTTCACATTTCTTACCGGGAACTGGATTGGAAGGCTCATGAAGCTAAAAGGAGAGATTGATCCACACATAGCCTTGGATCTTTCCAACAAAGCAACTTTGGCTTTTCTTCAACGCCACTTAAATCTGGACAGAAACTTTAATCAGTGGGATCCTTTGATTGATGGAAAAGATGACAACTTGATTCCAGGAACCAATATTACTATACCTCAGTCATCTATTTAATCAAGTAGCATAAAATGTGACTTAATAATCTTGCAAATGCACTTGTAACGAAGAGTCAGAACGTTACATGTTTGAGAAAAGACCAGTCTATCATTATGCGAAATCTGTTTTTGAAATTGCATaagagaaatttttttttgactgccGTGTATGAGTACGATTGAATTTGCACTATGGATTAGACGGTGATCtgatgtaaattacatttagtattttaaaacaagGCAAAAACTACAGTACATACAGGATGATTTATGAAATATACCACTTGCTAACAACATATTTGCAAAACAGACAGTGCAATagactttacatttattttttaagacttCACCGTCCTTTGTCGTGCCTTAATGTTTTTAGTTCTAGAAAGTGGGTGTTTATAtcaatgcaatgtttttaataatgtgacTGTTATAATGGGACATTTATAATAAGTGAAATTCTTCATAGCTTACTGTCACCCTGAGTTTAACATCTAGAAAGTAGGACATAATCTCAGGTTCTCTGAATCTGCAACTTTCTGATTTGTAAATCAATAGAATCAGTTTACactacaaattaaataaattcttcaaTTTCCGTATCTATGATTTCcagtaaaatgacaaatgcaaaaaggtacagtttttatgtatatgggattttgtttattaaacagaATATCTGAA

Function

GO:

id name namespace
GO:0016042 lipid catabolic process biological_process
GO:0003847 1-alkyl-2-acetylglycerophosphocholine esterase activity molecular_function

KEGG:

id description
K01062 PLA2G7, PAFAH; platelet-activating factor acetylhydrolase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206311 lncRNA downstream 12322 18311356 ~ 18313605 (-) False G139681
TU206315 lncRNA downstream 12322 18311356 ~ 18313605 (-) True G139681
TU206317 lncRNA downstream 12322 18311356 ~ 18313605 (-) False G139681
TU206313 lncRNA downstream 35107 18255858 ~ 18290820 (-) False G139681
TU206183 lncRNA downstream 145740 17888568 ~ 18180187 (-) False G139590
TU206339 lncRNA upstream 8222 18339274 ~ 18339510 (-) True G139700
TU206340 lncRNA upstream 8977 18340029 ~ 18340244 (-) True G139701
TU206341 lncRNA upstream 9677 18340729 ~ 18341183 (-) True G139702
TU206343 lncRNA upstream 10995 18342047 ~ 18342330 (-) True G139704
TU206385 lncRNA upstream 74752 18405804 ~ 18411854 (-) True G139708
XM_043219315.1 mRNA downstream 94872 18214570 ~ 18231055 (-) False fzd3a
XM_043219314.1 mRNA downstream 94872 18214570 ~ 18231055 (-) True fzd3a
XM_043220435.1 mRNA downstream 162602 18161260 ~ 18163325 (-) True lft1
XM_043220328.1 mRNA downstream 174254 18134188 ~ 18151673 (-) True kif26bb
XM_043220333.1 mRNA downstream 192699 18123631 ~ 18133228 (-) True cnstb
XM_043220580.1 mRNA upstream 12411 18343463 ~ 18350122 (-) False adgrf3b
XM_043220579.1 mRNA upstream 12411 18343463 ~ 18350121 (-) False adgrf3b
XM_043218608.1 mRNA upstream 23118 18354170 ~ 18363861 (-) True LOC122324297
XM_043218603.1 mRNA upstream 35715 18366767 ~ 18401190 (-) True adgrf6
XM_043220535.1 mRNA upstream 70114 18401166 ~ 18405819 (-) True LOC122325497
XR_006247229.1 other downstream 501726 17810274 ~ 17824201 (-) False swt1
TU205714 other downstream 897856 17346806 ~ 17428071 (-) True erh
TU205713 other downstream 897856 17425868 ~ 17428071 (-) False erh
TU205287 other downstream 1863711 16455468 ~ 16462216 (-) True G139030
TU205233 other downstream 1959155 16364810 ~ 16366772 (-) False fndc1
XR_006247304.1 other upstream 12420 18343472 ~ 18350122 (-) True adgrf3b
TU206351 other upstream 74975 18406027 ~ 18446949 (-) False G139706
TU206365 other upstream 75702 18406754 ~ 18442292 (-) True G139706
unassigned_transcript_2507 other upstream 744994 19076046 ~ 19076118 (-) True trnaf-gaa_119
TU206720 other upstream 923758 19254810 ~ 19256255 (-) False batf3

Expression Profile