RNA id: XM_043219858.1


Basic Information

Item Value
RNA id XM_043219858.1
length 6837
RNA type mRNA
GC content 0.45
exon number 2
gene id flrt2
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 6673230 ~ 6708654 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGAAGCTGTTCATTTATTAACAAGTTACCACATACGCTGCTCAATTTGAAAAGTTTTGGCTGATGATAACTCAAAAAAGTATCCACTCGGCATACGCAATAAACATCGCTTTCTAATaactcctaaaaaaaaaaaagcaaatcagcACAAAGAACTACAACAACATCGTCCATTCTCTCCGCGTCTGTGCGTCAAGCGGTTACAGGAAGATCTCTTGATGTGTGAAAAGCTTTTGTTCTCTAAAGAGCAGACTCGGTTATGACCCCTCATGCCATTAGATCATAAAGCATCAAGAACCGAAGCATGTTGTGCTCAGTTAGCAGCTTATTGGATTCCAGCTCGCAAACATAAATCAAATATCACCGAAGCTCATAAGGGTTGAAAGGCCTTTGCTACCGTGAGTTATATTTTGCTCTTTACTCAGCAACACACAGACGGATATAGGCATCGCACACGCACCAGATATCAGATGACGCTGTTGTTTTATATAAGTCGCGCTATAACGGCATGGTATACGATCTAATCCCAGTTCGAGTTTTGCCGTGTTCCTCAGAGGGCTGTCGCTCAGGTGCCGCTGATTCATTCTCCCCGAGCGCTGACGTCCTGCGGCATGCCTGACCCCTCGCCCTCATAACTCCCGCTTCGTTCCGGGGGACGCGACCCCACGACCCGCTCCTTCTCCAGAATCCGCCTGCCCTCTCCGAATTCCTGAAACATGAGCCCCGGCCCAGTGAGCTCATCGGCAGGCGTGGACTCGCAAAATAACTGCGAAAAAGAAAAGCGAGAGTGCGAGAGATGGAACGCAGAAACAAAAGACAGGTTGGACAACGCCGGCGACGGCTCCCGAAGGGGTTAAGTTACACGCAGCCGAAAGCGTAAAGGAAACAAAGGTGCGCTTCTGAGCCTCATTCTCAGGACCGACGCCGCACGCCTCAGCGGGAGCCGCTTCTTTTGAGCTCCGTTCTCTCTTGTCGGAGTCGGTATCTAAAACACACGTAATTCCAGAAGGCTCCCGCTGCCCTTCTGACCCCGCCGCGACCGAGAGACTCCGGTGTGAAAGTCTCTGGACCCAAATGTCACATCTTCCGGAAAGCCCTCGGGCTGAGGCCCATCAGCACTTGACAGCAGGCTGGGAGGTGGACGGTGTGGCTCAGTGCTTTAGCACTCTCTCAGTCACACCCTGCTTGGGCCGAGAGAGCAGTTCTGCAATGATCTGATTCCTCAGCATGGATGGCTTGAGTGAGAGAACCCATGCACTCTAATGAGACCACCTCTCCAGACAAGGACTAGAAATTATCAAGGGATTACTCCTCAAATTCCTGGTTTATCTGCGAACTGCGCATTAGAGTAATCTTTTAGAGGACTTAATTTTGCTGGATTTGTTACGTTTCCTTTTTACTCCCTCCAACCACTGATTTTGTCTTGCCATTTCCTCACCCtccctttatttttttcactatgGAGTTTCAAGCCGGATTTTGGAATAACGATTGGACTTCATTTCTTCGCTTTTGGTTGACAGTGTTGTTGAGCTTGCATGTGCAGTTCAGCCCTGTCTCCTCCTGTCCCAAGGAGTGCCGCTGCGATAGAACATTTGTTTACTGTAACGAGAGAAGCCTGACGTCTGTGCCTCTGGGGGTGCAAGAGGGATACAAGACCCTCTTCCTCCACAACAATCAGATCAACAATGCCGGCTTTCCATTGGAGCTACACAATGTTGCCTCTGTAGAAACTGTTTACCTGTATGGAAATCAGCTGGATGAATTTCCCCTCAACCTTCCCAGGAACGTTCGAGTGCTGCACCTCCAGGAAAACAACATCCAGACTATCTCCAGGGCAGCACTTGCCCAACTATCCATGCTGGAGGAACTCCATCTGGACGACAACTCCATCTCGACCGTAGGGGTAGAGGAGGGGGCTTTCAGGGAGGCTGTCAGCCTCAAGCTTCTTTTCCTCACCAAAAACCACCTGAGCAGCATTCCTATCGGATTACCGGCAGATATCAAGGAGCTGCGTTTGGACGAGAATCGCATTGCCGACATTGACGAGGATGCCTTTCAGAATGTCACCACCCTCCAGCGACTTTTGCTGGATGGGAATTTGCTTGAGGATGAGGGCATAGCTCCTGGAACCTTCCAGGACCTGGTCAACCTAAGAGAACTGAGCCTGGCTCGAAACTCCCTCACAGCTCCACCACCGTTGCTCCCTAGCGTATCCCTGACCAAGCTCAACCTGCAGGAAAACCAGATGGACACCATTGAAGTGACAGCCTTCGCTGGGCTTTCTAAACTGGAAAAGTTAGACATCTCTAGCAACCAGCTTCAGTTTCTTCCACCAGGTGTCTTTGATGGTTTGAGAAACCTGAGGCACCTTAATGCAAGGAACAACCTCTGGAGGTGTGATTGCAACATTAAATGGGTCATTGCATGGCTCAGGTCTCTGCCTTCTGCGATAAACGTCCGCGGGTTCACATGCCAGAGTCCCGAAAGGGTGCGTGGCATGGTAATTCGTGAACTCACTCTAGATGCCATCGACTGCCCAGCGGGCACCGTCCTGCATCCTTGGCCAACTCATTCATATCCATCTACATTGCCACCCCGCAGAACCACAGTCATCACCAAGACCACCTCCAGAACCACCCGCTTCACCACCATTTCACCCACTGCTTTTTACCCTGTCTCGGCCAATCCCACACCCCCATTCCCGCAGTTCCCTCCCGGCCCCCTGCCTCCCTATGAAGACCCCTTAAAAATCTCCTTTCATGTAGTGAACTCTACCTGCATTGATGTGAGCTGGGAGTCTTACTTCACTGTGACGGCTTACAAGGTGACTTGGGTCAAAATGGGGCAGAGTTTGATGAGTGATATGACTCGAGAAAAAACAGTGCCGGGATATCAACGAAGGCTTAGCCTGTCAAATTTAGAACCCAGGTCTATCTACCGTATCTGCGTGTATGTTCTGGATACTCTCAACACGTACAGACCGGGCGAGGATACTATCTGTTCTGAGGCTAAGACCAAATCCACATCCGCGTACTCTGAATCTGAGCAGGCTGCCCAGCAAGACAACACCTCCACGCTCCTATTGGCTGGAGTCATAGGTGGGGCCGTGTTGGTGGTCTTAGTGAcacttctaagcttgttttgctGGCACATGCACAAGAAAAGGTCGTCATCGTCCAAATGGAAATACAATCGCGGCAGGAGAAAAGATGACTACTGCGAGGCCGGCACCAAAAAGGATAACTCCATCCTGGAAATGACTGAAACGAGCTTTCAGATAGTGTCACTAAACAATGAGCAGCTTTTAAAAGGGGACTTCAGAATTCAGCCCATCTACACACCTAACGGAGGGATCGGCCTCAGAGACTGTCACCTCAGTAACAATAGCATAGCTTACTGCAAGAGCAGTAATGTTCCCAGTGTGGACTTCTGCCACACATGATGCTTTTTGACAGATGCTACAACCATTTGTTCAAAGAAAATGTAGTTCAATATACTGTACAATacacgtatacatatatacatatatatatatatatatatatatatatatatatatatttccaggTGCAGTCAACATGGTAATTTATACTGTGGACAAGTATGTGGAATTCTGCTATATTTTCTATTCTTAGTAAATATGAAATGGTTTTGTAATACGTGTGAGGCTCAAAGTGGTTTTGCTCAAGGACGCTGCGGATGTTTTGTATAATCGAAGCACGTTGGCTACCTGCTGCAAGTGGAGTCCACAGGTTTTGCCTCTCTACCACTTTAAAATCTTGAAAACGTTGCTAACCACACAACCAAAATATGCCCTTTGTGCTGAAATACAGCTACCCCTTCACACAACAGTAGTTAAGATAACACAGTGGTCAGGAAACCAAAACACCGCTGATTAAGCtgcagcaggaaaaaaaaggagctgagtttttttttttttttttggaattgaaGTGCACTTTCTTAATGCAGCAGAGAGCATGAGCAGTCATTCAGGAAATGAGCTTTTGTGGAAATCACATTTGAAGGGAAAAGGGACCACTCTTCAAAACCCTGCAGTTCTCACAAGGAGAAGCCTCCGTCGCTGAATGCGGTAGGGAGAAGGGTTCCTGTGCAAGAGGTTTTTCAGGAcatatttgtgtataatttTGCCCACCAGGGGGCAGCTTGTCTCAGTGCATACTGCTCAAACAGACCACAGACACTCTAGCATGTTAAAATCCTGGCTTGTCTGGAAAAGCTTTTGTGTCTGAGCCTTATTTTCAAGTAATTAGCAGCCCAAACATTAAATGAGCTAATATAATAACTGAACCCCTGTGGTAAACTTAATATCTTGAGGGAGCTCTGTAATCTCCTTCGTGTTTCTTTAATTATGATTTGTAAAACGtaagaaaattatgaaaaatgtcaactttaaatctgtatttgcCTTTTATGTACTTTCTTTCTAAAACATGTTCTCTGATTTACAAATTAGGCCAGGGTAATACACAGAGCTCCACCTTTCTATCTATTTCTGTGCTCTCGCACGAATGCGATCAAGAACATTCTACAGAGGCATCCACGTTATTGTCTGGCTTTTCCTTTACTGACCAAAACCCTTTTTAATCATGCATCACAACAGGTGGGATGATGAATGGACATTTAAACAAAAGCCCTCTTTTCACTGAGACGAACTGGCACATGCCAGATTCTGTCTTTGAAAGAGTTTCAGATCCCTGCATGAGCGCAAttagaactatttttttttaatggcgcACCAGTTTTCCAGGACAGAGAGCCGAGTTTGGAATTCAGGCTTGCTGTGGAGAAGTATTTATCATGCGCTGTTACTCATAGACTTTACTTGCTTTgacaagattttattttgtgggCCGAGTTCAAACCCCCACTGCATAATCCCTGGTCcaagaaagggaaaaaatgcaGAGGTTGTTTTCGCTTGGCAGGAGGATTCGTGACTGGGATGGGGGTTTGTAGTCGGGGTGGTGGTCCTAATTGTCAGAGTTAACCCTTCATTGCTCTCCAACTTGGCATTAGGGTTCAGACTAGATGGCTGGATACTTGTTTACATCCAAATTGCTTTTGGAATTGCTCAAAATCAAACGGATGCTTTGATTTCTGTGACTAACACAGTTGGTGCTTGCACAGGTTAACTACCAACAACCCACAAGGTTTGTCTCAGTGGCACAAACAAAAAGGGCTACTGCATTCTGTGGTCATGAAAGTATTTCTCCTTAGCATCCCAGCAGGCTTCTCCGACCACCCGGTCCCTACTTTTCCTTGAAATCTGGAACGTCCTCGGGCTCCGTTTCTCATCCGAAGGCTTTTAACTGATGTGTACACCATTAACAATTCATTTCAAATCCTGCGGCCACCCGTAACTCTTTTTAACAGACTTCCTCCACACAAGTCCGGTGCGGTTGTCAGGCTCAGGTTACCAGAGAGGAGGCGGTTGCGGTGGCTCAGACCCAAATGAATCGCGCGAAGTTAACCCGATAGTGAGATAAATCTGTCCCGAGCCTCTCGCAGACGTATTTTCACAGAGAGAAAAGTAATGGCACTCGTGCCACTATCCTCCTCCGAAGTCCTCAGAGCTAGCTTTTGCTGGGTCGCTACCAAAACCAGAAATGTCTCATACTGAACTGTTTTATCTATTGCCTTACTGTAACCCAGCAGTATGTCTTAATGTGGTTCACGTGAAGGATTTGACTTTATTTACACAGAGATCTGTGGCTTACACGTTTCGAAGGCAGGACTGAATGGAAAGCACACATTTTGAAGGGCAATTGCAAACAGCATCCTGACAGACATCAATAGATGACATTGCTAACAAGTCAAGGTCTATCCTCCAGACAAGAATGGCGTGTTATGATTCAGAGTGACTCATTGCTTCACTCGTGTGGCGTACattgttctttattttctatGGATGAGCTGAAAATCACAGTAGTGGCCCTGTAGTCAAATGGATGTATTACACAAAAGGGACTGTGAGCAATGCCTTGCGTCCGTAATCCTACCCAACATTCAATCAGTTTCTTGAAAAAGCACATCGATTTGGTTTGGAATAATTACTCTAAATGACTGTGAGGTCAGTCTGAACAAAGCACTACCACAAATGTGGCTGAATTCGTCTTTGATCTTTGTGTGTCCCTTTCActctttttttgaaagaatatatttttcattacgTTTTTTGAAAGGTTTTCTCACATGTGCAATTTGGTATATATGTGTTCaatattaaaacttatttaataCAGATTTCAGCACATCGGTTGACATAGCGGTTTTGCATTAGGACAAGACAAATTCTAGCTGATGTTTGAATGAACGGCAATCTGACAACCATGACAGGTTTAACAACAACCACAGCGTTTTATGTTTTAGCATTTGGGTCTTTTTTCTTCACGTTTATGATGGGGAGCGATTCTGCTTTTCACAAATGGTGATTTGTTTGATCTGTAAGCTGGGTTTTGCGAGTAGAATCCATTGGGAACCAAAGTAATTTTTTGATTGCtatgtacatttaatttctttcgTTTGTTTCCACTActaaactgttgttgttgtccCATGTATGTGCCTTGAAATGAACTTACAATGTAAAGTCCTTGaaacctttaaatgtttttgcacaagTTGTAAATAGAGAaaccaagcttttttttttttttttttttttcgaaaataAAGGAGCCATCAGAATTGACATACGATCTTGTCCGTTACAGACGAATCTCACTTTCgtatttttctaaatgtgtgagatacatttattaacacattgTGCCTGTAGTTGTCCAAAAACTAAAGGTTGTACAAAACtgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201648 lncRNA downstream 275120 6383432 ~ 6398110 (-) True G136506
TU201576 lncRNA downstream 395166 6274754 ~ 6278064 (-) False G136460
TU201549 lncRNA downstream 426339 6246263 ~ 6246891 (-) True G136440
TU201506 lncRNA downstream 467792 6205090 ~ 6205438 (-) True G136416
TU201487 lncRNA downstream 527569 6128498 ~ 6145661 (-) True G136398
TU201900 lncRNA upstream 418559 7127213 ~ 7130585 (-) True G136689
TU201908 lncRNA upstream 425094 7133748 ~ 7136993 (-) False LOC122324389
TU201909 lncRNA upstream 425094 7133748 ~ 7139291 (-) True LOC122324389
XR_006247160.1 lncRNA upstream 427120 7135774 ~ 7138782 (-) False LOC122324389
XR_006247161.1 lncRNA upstream 427120 7135774 ~ 7138780 (-) False LOC122324389
XM_043220304.1 mRNA downstream 203161 6467779 ~ 6470069 (-) True glrx5
XM_043218729.1 mRNA downstream 221767 6432762 ~ 6451463 (-) True LOC122324366
XM_043218837.1 mRNA downstream 259259 6410962 ~ 6413971 (-) True si:dkey-63b1.1
XM_043218759.1 mRNA downstream 304475 6350830 ~ 6368755 (-) True meis2b
XM_043218758.1 mRNA downstream 305264 6350830 ~ 6367966 (-) False meis2b
XM_043220372.1 mRNA upstream 412697 7121351 ~ 7124683 (-) False LOC122325354
XM_043220371.1 mRNA upstream 412697 7121351 ~ 7124683 (-) True LOC122325354
XM_043219826.1 mRNA upstream 447613 7156267 ~ 7158619 (-) True LOC122325011
XM_043220588.1 mRNA upstream 513982 7222636 ~ 7225982 (-) True LOC122325548
XM_043220587.1 mRNA upstream 514499 7223153 ~ 7225981 (-) False LOC122325548
TU201662 other downstream 221731 6432830 ~ 6451499 (-) False LOC122324366
TU201658 other downstream 259217 6412479 ~ 6414013 (-) False si:dkey-63b1.1
TU201577 other downstream 370254 6274754 ~ 6302976 (-) True G136460
XR_006247217.1 other downstream 742108 5924475 ~ 5931122 (-) False zpax2
unassigned_transcript_2505 other downstream 846499 5826620 ~ 5826731 (-) True trnal-caa_53
TU201897 other upstream 417094 7125748 ~ 7228963 (-) True G136688
TU201939 other upstream 588207 7296861 ~ 7305724 (-) True G136707
TU201958 other upstream 627497 7336151 ~ 7340436 (-) False LOC122324874
TU201961 other upstream 627497 7336151 ~ 7339939 (-) False LOC122324874
TU201941 other upstream 718015 7426669 ~ 7429268 (-) False LOC122325546

Expression Profile