RNA id: XM_043219883.1


Basic Information

Item Value
RNA id XM_043219883.1
length 4633
RNA type mRNA
GC content 0.42
exon number 10
gene id txlnba
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 18846395 ~ 18864036 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTCCACTGGAGGTTATTTTGAGGGGCTCATGCTGTCAGCTGTTGTCTCGAGTCCTTTTGGACCCTCCTCACTTCTCTTTTTCACTCTGATAAAAGCGTGGACTGACTGGTTCATTGTCCTGCTTTTCTATTCGAACCCGAACGGACACGTGTGGGATTATGGAGGGCAGTGACCAGACCTCTGAGAATGCCAATGAACAAGTCAATGGTCCAGAGGAGCAGGCGGTGGACCCCATGGAGGACTTTAGCAGGCAGCTAGAAGATATAATCAACACGTACGGAGCAGCATCCAACCTGATGCAGGAGCAGATCTCCATCCTGGAGTCTGAGGAGAAAAAGGAAGAGGAGGCAAACGCTGATAAAGAGGCTGGCCCACAAGAAGCTGGTGCCAGTCCAGAGAAAGAGCAGACAGCCGATAAGAAACTCCTCAAGGGCCTGGGTAAAGAGGCCGCATCCTTATTGCAAAGCCTGAACAAGCTCGGCTCACCAGAAGAGAAAGTGGAAATGGTGTTGAAGAAATACACTGAGCTGGTGGAGGAACACAGGACTGAGAAGAAACAGCTGGAGCAGCTTCAGCAGAGACAGGGTCTTCTGGTCAAGCAGAGAGATCAGCTTCAGTTCGAGCACAGTCGTGCCATCCTGGCCCGCAGCAAGCTGGAGATGCTCTGCAGGGAGCTTCAGAGACATAACAGGACTCTAAAGGAGGAGAGTCTGCAGAGGCTGCGGGAGGATGAAATGAAGCGGAAGGAGATCTCTGCTCATTTCCAGAGCACGCTAGTGGACATTCAGAATCAGATCGAGCAGCACAGTAACCGCAACAACAAGCTGTGCCAAGAGAACAGTGAGCTGGCCAGCAAACTCAAGACCATCATAGAGCAGTATGAGAGAAGAGAACAGAGCTTAGAGAAGATATTCAAACACAGAGATCTGCAGCAGAAACTGTCTGATGCCAAGCTGGAAGAAGCCAACATGCTACTCAATCAAGCTGAGGAGAAGCACAAAAGAGAGAAGGAATATTTACTCACTCAGGCTGCAGAGTGGAAACTACAGGCTAAAGAGCTGAAAGAGCAGCACACTGTCATGCAGGCCCAGCTTGTGTTGTACTCCCAGAAGTTCGATGAGTTCCAGAACACACTAGCAAAAAGCAATGAAATCTACATTACTTTCAAACAGGAGATGGAGAAGatGACAAAGAAGATGAAAAAGCTGGAAAAGGAATCAAGTATATGGAAGACTCGGTTTGAAAGCTGCAATAAAGCTCTTGTTGAAATGATTGAGGAGAGATCAGAAAAGGCCAAAGAGTTTGAACTCTTCACTTTGAAAATCGACCGTCTGGAGACTCTGTGCCGAGCACTgcaggatgaaagaaaaagtttatATGCCAAGATTAAAGAAATACGGTCCTCAGAAAAGGTGACTCTAGCACCTGTGGTGGACTTGCCCCAAGTAGATGAGCTTCCAGAGCTTGTCGAACTTCCAAAGCCAGCTACCAACCCAATGCTGACTGCAGAAATGAAGAGGTTGCGAGAGGAGCAGATCCGTCTGCAGGAGTTTGCAGCTTCCTTGGTAAGCTCCATAGATGATGCTGAAGAGTCTGATACTGAAGAAGAGAAGGCGGCAGAAAAGTTTCCAGCAGTTCCTGAGGTTCCCAAACCTGAGTCTAACAAACCAGCAGATAAACCAGAGTCAACACAAGATAAACCCTCTaacacagaagaaaacaaaccagAGGTTGCTAGAGTAAACGAAGAGAAGCCATCAGAGCCTGCTAATTCTGAACCCGCCAAAGCTGAGACAGAAACCAAACTTCCTCAAGATCCTCTACAACCAGAGATCACTGAACAACAGACAGGAAAACAGGAGACCGCCAAAGAGGATGCAAGCCAGAAAGATGTGACAAAAACAGAAGAGACGATCAAACAGGAATCCACTCAGCCAAAGCCTGTCATGAAAGATGAAGCTGTTAAACCTGAGCTACCTGAACCAGAGCCACACAAACAAGAGCCCCTCAAAGAGGAGCAGCCAAAGCCTGTCTTGAAGGAAGTTAACAAAGATGAAGCTATTAAATCTGAGCTACCTGAATCAGAGACGCCCAAACAAGAGCCCCTCAAAGAGGAGCAGCCAAAGCCTGTCTTGAAGGAAGTTAACAAAGATGAAGCTATTAAATCTGAGCTACCTGAATCAGAGACGCCCAAACAAGAGCCCCCCAAAGAGGAGCAGCCAAAGCCTGTCTTAAAAGAAGATAGCAAAGATGAAGCTGTTATAACTGAGCTACCTGAATCAGAGACGCCCAAACAAGAACCTCTCAAAGAGGAGCAGCCAAAGCCTGTCTTGAAGAAAATTACCAAAGATGAAGCTATTAAATCTGAGCTGCCTCAACCAGAGATGCCCAAACAAGAGCCCCCCAAAGAGGAAAATGCTGAGAAAGCCACAGCTGCCTCTGAGGAAGCTAGAGCACCGGCGACAAAACCTAAAGCCCCAAAATCCCAAGAGGCAAAAGCAAAAGCCGGCAAAGTCCAGCCTAAAAAACAAGCTGCGCCCAAGAAGAAAGGTTCTGCAAAGGGCCCTAATAAAAGCTAAGCCGAAATGCATTaccaaagtttttctttttattgtttctaGATCAGTTTGTTTGTGTACTTAGTGTACTTGGTTTGTGTACCAAGTCTTGCTGTTGATGAGTTTAAAGGCCACATTTGTCAAGTTTTGTCTAGTCAGTGTGTTACTCCTGTCAGCATCTGTTGGTGTCTGTCCTTGCTTTTTTCTGAACTGAATGTTGATTCAGCATTTATAAAGTCTTGGTATGCTTGAGAAATGATGTAGGCCTAATGTTCTTGGTTGGTGTGCATTGTCTGTGTAGTGTGAATTGAACTCATAAGTTAATACAGACGATGACAAACTGGTCTTTATGAACTTTTGAATATAAAGATGAGTTTCTAGCTTCCTGTAATAAGGACTTTTTTCCACTTGTAATACTTTCTTCAATACCTTCAAATAAATGTCTGCATTTGACAATCCTATAAAATGTGACTATGactaatacaatatatataatttattcctattaATAAGTAAGGGATTATCAATAGGTTGCTGTGCATCacaagattttaaatgtatgatgtGGGGGCCTAGAACTATCTGATGCAAagcatatttagttttgtttttagaaagttTGTACTAGTTTGCACTAGTTTGAAAACACCCACTTTTGcctcattctttttttcttttttttttacagtgtgaagGCAAGGTCGTATGAATTTCTGAACAGCTTGTTTTAAAAACTTCCCAGTACATTATGACAAGTGCTTTGAACATTAAAATCCAATTTACCAGCTAATTACTCCGTATAGAGTTACCATAAAAACGGAAGGTCAAAGACAGAAATCTAAAGATAACTATCTGTGTGTTTCTCAGACACATAAGgtcaataaaatcaatatcatATTTGCAAATGCGCTCATACATGCTTATGTCCAGGAAAACCaatcttgtttgttttctctttttttcccactcTTTCCTGCTTCAGTTTTCTCACACAGAACAGCCTCCTGGACATAACCAGTCTGGTTTCAGTGGAAATTCAACCTTGTCACAGTTGTTGCAGCTTTAAAGACCCTACTCCAAAGAATTTTCgaaattttcttttcttcaataCTTATCTTGTTGGATCCATTTGCTGCTTTTGACATAGTTCACCACAGGATCCTCCTGTCAAGGGCATCTCAGGAACCAGACTCCAGTGGCTTGAATCTTACCTCTCAGATAGGTCCCTTAAGGTATTTTGTAGAGGTGAGAAATCCAAGTCGCAACATCTAACTACTGGGGTGCCTCAGGGCTGAGTTCTTGGACCACTTCTTTTCCCTGTCTATATGGCATAATTAGGTTTTTCATgtcactgctatgctgacgaTACTCAAATGTATCCGACAATAGCTGCTTGAATCTTAGAACACACATCTCTTGCTGGATGAAGCATCATcacctttaactttttttttgccaagacAGAACTGCTTGTGGTTCCATCAAACTCATTATTTCATCATAATTTCAGCATCCAGTTAGGCACATCATCCATATATCCTTCAAAACAGACAGAAACTTTGTAGTTATGACTGACAACTTTCTGAGACTATATTGCTAAAACTACAGATTTGCTTTATTCAACATCAggaagatcaggccctttctttTGGAAAATGCTTCCCAACTCTTTTTTCAAGCTTTTGTTTTGTCCAGGCTGAACTATCACTAGATGGCTGTATTTTTTCTAttctgctgttttcttttatatttatttcagaattttaaaaaaacaacttgttaCGTGCACTGTGTTAGTCTAACTGAGACTTGTCATAGCACTTGCATATCACTGCTcctttgttgattttgattgcttccattgtcctctTTTGTAAGtccaatttaatttattgacttttcagcatcattacagaTTCAAAAAGGAAGAAATTACTAAAAAAGAATACACAGAGTTCTTATAAAGTCTGTAATCATTCAAAAGTCTACACACACAGGGAATAGGTGATCTGAGTGtttttagataaaagcatctgcatgctaaatgattaaatatatgcaatagaAATGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206550 lncRNA downstream 16596 18824880 ~ 18829799 (-) True G139823
TU206519 lncRNA downstream 175462 18669438 ~ 18670933 (-) True G139801
TU206504 lncRNA downstream 211729 18627307 ~ 18634666 (-) True G139798
TU206496 lncRNA downstream 247483 18598694 ~ 18598912 (-) True G139790
TU206392 lncRNA downstream 394263 18449962 ~ 18452132 (-) False LOC122324299
TU206615 lncRNA upstream 176754 19040790 ~ 19043914 (-) True G139871
TU206658 lncRNA upstream 295802 19159838 ~ 19160157 (-) True G139903
TU206702 lncRNA upstream 360344 19224380 ~ 19250790 (-) True G139940
TU206741 lncRNA upstream 434233 19298269 ~ 19300293 (-) False angel2
TU206999 lncRNA upstream 471043 19335079 ~ 19341060 (-) True G140152
XM_043219728.1 mRNA downstream 6071 18833395 ~ 18840324 (-) False slc25a27
XM_043219729.1 mRNA downstream 10722 18833395 ~ 18835673 (-) True slc25a27
XM_043219450.1 mRNA downstream 14822 18830424 ~ 18831573 (-) True ptrhd1
XM_043219448.1 mRNA downstream 61797 18781603 ~ 18784598 (-) True rpl7l1
XM_043219446.1 mRNA downstream 66688 18766159 ~ 18779707 (-) True slc5a6a
XM_043220516.1 mRNA upstream 7629 18871665 ~ 18874009 (-) True cited2
XM_043218876.1 mRNA upstream 136807 19000843 ~ 19010179 (-) True nmbr
XM_043220434.1 mRNA upstream 218509 19082545 ~ 19087185 (-) True si:ch211-202p1.5
XM_043220378.1 mRNA upstream 232243 19096279 ~ 19166008 (-) True hivep2a
XM_043220376.1 mRNA upstream 232243 19096279 ~ 19162787 (-) False hivep2a
TU206351 other downstream 399446 18406027 ~ 18446949 (-) False G139706
TU206365 other downstream 404103 18406754 ~ 18442292 (-) True G139706
XR_006247304.1 other downstream 496273 18343472 ~ 18350122 (-) True adgrf3b
XR_006247229.1 other downstream 1022194 17810274 ~ 17824201 (-) False swt1
TU205714 other downstream 1418324 17346806 ~ 17428071 (-) True erh
unassigned_transcript_2507 other upstream 212010 19076046 ~ 19076118 (-) True trnaf-gaa_119
TU206720 other upstream 390774 19254810 ~ 19256255 (-) False batf3
TU206721 other upstream 397430 19261466 ~ 19262878 (-) True LOC122324949
TU206746 other upstream 436340 19300376 ~ 19302848 (-) False angel2
TU206747 other upstream 436340 19300376 ~ 19303968 (-) False angel2

Expression Profile