RNA id: XM_043219892.1


Basic Information

Item Value
RNA id XM_043219892.1
length 2792
RNA type mRNA
GC content 0.41
exon number 12
gene id LOC122325054
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 20230975 ~ 20242311 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gCCAAAAAATTACTTTGGTATGAAAACGTTGCCAAAGTTTGTAtactatattttgtataatttattctgTTGCAGATGCTAGAAATTTTAGGACcatgatattttcattttaatttaaatttcaacttcagatataattataaatatatttaatgttaaacgAAACTAATTTCTTTGCGGAACAGATATTATTTGATAtgttatatttgatatttttaactcTTCTTTATTCAGTCTGCGTAACGattttttaagtcttttaagTTTGAATGAACTGCTGAGTTAGCGCCTGCAACACCTGTCTCCCAGTGGGAGGAGCTATCTAGATAAGGGCAGGGCTTAATCATATAGCGGGCGGAGTTATGTTATGGTGTGAGCTGGGTGTGAAGATAGTGGGCGCGGTTAGCTTCGGGGTAGGAGGGGCTAAAGCTATAATAGCAGGGGCCAGTGTTATGAAGTTACACGGGGTTGTTCGTAGTGGGCGGAGTTAGCTGTTTGGTGGGAGGATTTAGTTTCATTGCTCAGATCATTCTCAATGAAGAAATCCGATCTGATACGTGACCGCTGATGAGTGTAATCAGATATGTTAACAGGACCTTTAGATACAGACTCCTCATAAGCGCTCCAGACGAGCATCACTGGATTCTAGGTTGCGATGGAATGGATTACTTTAATTTTGACTGCGTCTATTGTGattatttcttttcatcttcTCTTTGGCAAAAGAAGTCATCCCAATGCTCCTCCATGCATAAGAGGTTGGATACCTTGGTTCGGTGCTGCTTTTGAATTTGGCAAAGCACCTTTGCATTTCATTCAGCAAGCCAGAGCCAAATATGGACCAGTTTTCACTGTTGTAGCCGCTGGGAAGAGACTGACATTTGTGACCCTTAATGAGGATTTCCGAGCTTTTTTCACTTCCAAAGATGTTGATTTTGAACAAGCGGTGCAAGAAGCTGTTCACAACACAGCTTCTATCAGCAAAGACTGTTTTTATAAAACCCATCCAACCTGTGCTACCATAATCAAAGGCAGACTGACTCCAGGCAACACGGCAGTGCTATCTGTTCATCTCTGTGAAGAATTTAATGATCATCTGGAGAACCTTGGAAGTGAAGGATCTGGACAGCTGAATGAGATCATCAAGAGTGTTATGTATCCAGCAGTAATGAGCAACTTACTGGGCCAATGTAACTCCCCTAATAGCGCTCTCACCAGGCAGGAGTTCCTGGAGAAGTTCACAACGTATGACGAAGGATTTGAATACGGATCCCAACTTCCAGACATGTTCTTGAAGCAATGGGCAAACTCGAAGCGATGGCTCCTTTCTCTGCTGAGAAATATGGCTATGAGAGCAGATGAGACCCTCAACAATGAGAATGATGGAAAGacTTTACTACAGCACCTGGCTACTGCAATAGATGACAAATATCTTCCCAATTATGGCTTACTTTTGCTTTGGGCTTCACTGGCAAATGCTATACCGATTACGTTTTGGgctattgcttttattttggccaATCCAGAAGCGTATAAGATCGCAATGGATCAGATCAACGCTGCACTCAGAGACCAAGACAAGGAGAAGACAAAGGTGACCCTGGATGACTTACAGCACATGCCATATGTGAAGTGGTGTATCATGGAAGCCATTCGGCTGAGGGCCCCTGGAGCCATCACTCGTAAAGTAGTGCGGCCTCTCAAATTACAGAATTATGTTATCCCGCCTGGCGACATGCTGATGTTGTCTCCCTACTGGGCTCACCGAAACCCTAAGTATTTCCCAGACCCGGAAGAtttcaaacctGAACGATGGGAAAAGGCAGATTTAGAAAAGAATGTCCACTTGGAAGGTTTTGTGGCATTTGGAGGGGGGAAAAATCAGTGCCCAGGAAGGTGGTACGCTGTTATGGAATTGCATATGTTTGCGGCCCTCATCCTCTACAAGTTTGAATTCACCCCGCTGGATCCAGTACCCAAACCGAGCCCTTTGCATTTGGTGGGAACCCAGCAGCCAGACGGACCCTGTTCAGTGAGATACAAGCACAGATAGAGCACTCATGTCCAGAGGTCTGTGCTGCCGCTTTAAAGCTTTGTTGACAGTCTTGACATAAGAGTTGCAGAGATCAACTGCATTTCCTGGGCTGAGCTTCAGAGGTTTGAAGCATCATGGTGAATGTTAAACAGTGACTTGGAAACAGGCAAATATTACATCCCTCTAAAGGAAACCAGAAAATCACACAGTGTTAAAGGTAATTTAGGATATTagctttaatatatattacagttttgttgGGTCAACCGCTGTATAACTGATGGCATAATAGAGATGAAATATATCAGAAAGCATAAGGTTGTGGAAATTCCTTTTTCCAGACGGAGAGACTTTATCATTTTCAGgatgtataaaataaacaaaatgtattgctGCATGTGACCGCAGTCATATATTACAGTTAAACATCTTGTGCACGAAATGGACGGAGTAAAGACAAGTTTATAGACAATATAACTGAGTGGAGGTTCTCTTTTGTGAAGCAGAAATATGTAAACAcattattatgtgtataaacACCATGCTTCTTTTTCTGCAGTGGTGAAAAGGATTGTTTCTATAAACACATCTGTCTTGTAGTCTGTAAGTTCTTTACTGCATCTGTGTACACTCATTTTTggataatattacataatattacacaGCATACTATAATTTTATGTGCTTGGATGCAAGCGTCTTTAATTTGTAAGTCAAATAGATTGTTTACTTCCATTAAATATACTGATGTACTTGA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K07439 CYP39A1; 24-hydroxycholesterol 7alpha-hydroxylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207209 lncRNA downstream 62977 20148280 ~ 20167998 (-) True G140304
TU207161 lncRNA downstream 321328 19905631 ~ 19909647 (-) True G140265
TU207139 lncRNA downstream 429307 19800522 ~ 19801668 (-) True G140248
TU207134 lncRNA downstream 429307 19800665 ~ 19801668 (-) False G140248
TU207124 lncRNA downstream 490612 19739699 ~ 19740363 (-) False G140240
TU207223 lncRNA upstream 24357 20266668 ~ 20268266 (-) False G140315
TU207225 lncRNA upstream 24357 20266668 ~ 20268266 (-) False G140315
TU207226 lncRNA upstream 24357 20266668 ~ 20268266 (-) True G140315
TU207227 lncRNA upstream 24357 20266668 ~ 20268266 (-) False G140315
TU207243 lncRNA upstream 44169 20286480 ~ 20286995 (-) True G140328
XM_043219894.1 mRNA downstream 1154 20173548 ~ 20229821 (-) True rcan2
XM_043219895.1 mRNA downstream 35502 20173548 ~ 20195473 (-) False rcan2
XM_043218919.1 mRNA downstream 159698 20069406 ~ 20071277 (-) True LOC122324484
XM_043220540.1 mRNA downstream 381930 19827100 ~ 19849045 (-) True LOC122325502
XM_043219787.1 mRNA downstream 579846 19649188 ~ 19651129 (-) False LOC122324982
XM_043219893.1 mRNA upstream 15942 20258253 ~ 20263850 (-) True clu
XM_043220219.1 mRNA upstream 50983 20293294 ~ 20296159 (-) True ccdc25
XM_043218776.1 mRNA upstream 59095 20301406 ~ 20304874 (-) True pbk
XM_043218870.1 mRNA upstream 64328 20306639 ~ 20311285 (-) True LOC122324455
XM_043220350.1 mRNA upstream 69113 20311424 ~ 20328698 (-) True pex7
TU207179 other downstream 167998 20061602 ~ 20062977 (-) True G140277
TU207099 other downstream 171372 20057624 ~ 20059603 (-) True G140227
TU207100 other downstream 172476 20057624 ~ 20058499 (-) False G140227
XR_006247245.1 other downstream 615773 19601532 ~ 19615202 (-) False trim54
TU206747 other downstream 927007 19300376 ~ 19303968 (-) False angel2
TU207486 other upstream 731093 20973404 ~ 20975750 (-) False crnkl1
TU207613 other upstream 956399 21198710 ~ 21278741 (-) True G140616
TU207887 other upstream 1267318 21509629 ~ 21512353 (-) False LOC122324936
TU207950 other upstream 1490235 21732546 ~ 21741004 (-) False batf
TU207987 other upstream 1598802 21841113 ~ 21841468 (-) True G140883

Expression Profile