RNA id: XM_043219895.1


Basic Information

Item Value
RNA id XM_043219895.1
length 3160
RNA type mRNA
GC content 0.43
exon number 4
gene id rcan2
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 20173548 ~ 20229821 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

acatggacacGTACGTCTGAGAGTTACAGCAGGCTCTTCAGAGCAGGAAAGCAGCATAtccaaacactcacacacagcctCGCGTGCATTCAGACGCGCTCCTCACACATCCTCTGTCAGGGGCCGGTCATCCCTTCAATCTGAGTGAGCCCAGGATGCCCTCCAGGAGCGTGGACTGTAATATCTCCACCCTCATCGCCTGCGCGGTGGACGTGGAGGTGTTCACCGGTCGGGAGGTCAAGgAAATGTTCGAAGCGCTCTTTCTTGCATACGATGAGGGTGTGACGTTTCAGCAGTTTAAGAGCTTCCGACGTGTACGAATCAATTTCAGTAACCCCAAAGCAGCAGCCAGCGCTAGAATAGAGCTACACGAGACACCTTTCAGAGGAAAGAAACTTAAACTCTACTTTGCCCAGGTGCAGAATCCAGCATCCGAAGGAGACAATTTGCACCTGGCTCCTCCCCAGCCTTCCAAACAGTTCCTCATCTCCCCTCCTGGCTCACCTCCAGTTGGCTGGCAACAGATTGACGAGGCCACACCAGTTATAAACTACGACCTGCTTTATGCAGTTGCCAAGCTTGGCCCAGGTGAGAAGTTTGAGCTACATGCAGGCACAGAGTCTACACCCAGCGTGGTGGTCCATGTCTGTGACAGTGACAcggatgaggaggaggaaccAAAGAACAACCCTAAACCAAAAATCATCCAGACCCGACGCCCAGACCTGCCAGTCTCACACTGAACTCTACAGCTCCACACAGAGTCAGGAGGACTTATCCCCTCCACCATCTCCTTCACAGGACCTCTGCCACTCTCCTTCAGAACCTTATCAAATACACAAGCAGGGTCTGAGGGACTCTAATCTGTGTTTCTCGTTCAGCACACACTTGTATACAATACTCAATGTGCTGTCAcacaattgttttctttttgttcgtttttttttatgttgcaatACTCTGTGTTAAATATGGCCGCTCTCTGTAACTCTTTTCCAATCTGACTCTGTTGTAATGTCATCTGATCACCAGTTAGAGGCAGCATGCACCCATCCCTGCTCTCAAATACATTTCTGATTGGATACTGGGCCGCGACACGTGATAGTGTCAGATGTGCCTACTGGCTGATAGCAGGCCACTTGGCTTTGCTCTTGCACCACCACAACTATGTACCATTTTTTACCCAGCAAGCCATTAATAATATTACGTTCTTCATAAGGGCATGCTAGCCACTAAATGTGGCTAAACACCAGCGCTGCATGTGGCACCCCTAGAAATATATCTTGCCTAAATAATTTCTGTCAAATAAACCTAGTATGGCAAAAACGGTTGACTTTTGCGTAGCAAAAAGTGCAGACCACAAGAAGCGCTCTCTTCAGGCCAGTGCATGTTCTGGTAGCAAACTGTAAGTTATTATTTTCCGCTGTGTATAATTGTCTGTGTCCCGCCAACAGTGTTCTTACAGAAAAACGATGCTTTTCCGAACGATAAGCTGACATTTTGATTGCACCTTTCAGTGGAACCTATATGAGTTGCTTCCtcaatgtgaatttttttttttttttttttttttgtgcttgtgcCCTTTTCGGGACGGAAATATTAAACCTGACTTATTTTCTCTGTAAGCTCCCACTACAGATTGATGACACCAATGGGTAATCAGGTgtcatttaatgaaatctgtaTTATGCATGGTTACTCGTTTCTAGAATTTAACATAGTTGTCCCAAATCCGCAGCTCTTCTCGTTGTCTGTGAGActtcattcacacacaagttCATTTCTAATCACGTCCAAGAAATTGCGTAGGATGCTACTGAGACAGATCTTCCAAGTGCTATTACACATTGGGTAACTACATGGGTGATGAACCTATCTTATTCAGTCAGTATCTTTTTGGTGTGCCTAACTCATTTATGGATTATtaagctaaacaaaaaaaaacagctatttataTATCCAAAGTACATAACATCAAGGCATGCACAAACCATATCCGTAGATTTGAGTCGCAAAGGCACTATACTACCCATGTAGTTGGCAAACGCACCGTGAGAAAGCATTAGTTAGTCGTGGtataatgcttacattttttcttccaaaatatataaacgACGTTCATCCCGGACAGTCCATCAACACTGTGATGTGTCATTACTGTGATACTTGACTGATGCCCCCCATGTTGAAGTATTATTGTACGAGTATGTTGTAAATTTTAGAAGGTTATAAGGATTAAACATCTGTTGTTCAGTGTTCACGGCTTGTTAAGGATGGTAGCCACAACCATTTTTCCTCCAATCTCTGATTGTTCTTTGGTTCAAATGCTGTTGGTATGCGATTCATCTGTCTGTGTCCATTAGCCTGAAAGAATGTAGAAGTAATACATCCCATCCCCGTGAAGCAGTGACTCTTTCACTGTTCTGGAAACAGGGTATTACTGCTGTTTTTTGACATCACCGTCTGCGTTGTGACACACAGATGTTTCCTTATGCTACCACAGCCACAAGCCttatttgatttagttaacAGTGCACACTCTGGTTTgcttctccaaaaaaaaaaaagaaaaaaagaaaagaagtagGATCAGTACATGTCAATAGGATAAAGGGGATGAGAGCAATATAACAAAACTAATACCAACCAACTGTCCACTGCCTTGGACTTTCCCTTCCATTTAATTATAGCCTGCTCGGCCAATCAGCTCTTCCCATATTCTCACAATGACAAAAAATCTATCGCAGTCTCACACGCTGCCAGCCTTCCTTACCGTCATGtaatttaagatttttgtaTTGTTCTGTATTGCACTTTCTTATTCACATGACTGTACACGGTATCATTCAGTAACtgtatttccttttatttttcatgtactCCTGAAGACATGATATTATATCTGTTCTTAAAGTCTTTGATCTGGAGTTAGTGTCACTGATGTTGGGAAACAATATCTGTATTGTGTATACTCGTGCAAGACCATTGGTGTTCTTGTCATCTACATGTGCGTCCTGCCTGCCGACACTAAGGAGACATATCTGTATATAttaatcaataatatttttactgcatttttgtacaaatattcATGGTAGCCATGTACAAGTAGTTGAGATGATTCTTtgttagtattaaaaaaaagtttggttttAAA

Function

GO:

id name namespace
GO:0019722 calcium-mediated signaling biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207209 lncRNA downstream 5550 20148280 ~ 20167998 (-) True G140304
TU207161 lncRNA downstream 263901 19905631 ~ 19909647 (-) True G140265
TU207139 lncRNA downstream 371880 19800522 ~ 19801668 (-) True G140248
TU207134 lncRNA downstream 371880 19800665 ~ 19801668 (-) False G140248
TU207124 lncRNA downstream 433185 19739699 ~ 19740363 (-) False G140240
TU207223 lncRNA upstream 71195 20266668 ~ 20268266 (-) False G140315
TU207225 lncRNA upstream 71195 20266668 ~ 20268266 (-) False G140315
TU207226 lncRNA upstream 71195 20266668 ~ 20268266 (-) True G140315
TU207227 lncRNA upstream 71195 20266668 ~ 20268266 (-) False G140315
TU207243 lncRNA upstream 91007 20286480 ~ 20286995 (-) True G140328
XM_043218919.1 mRNA downstream 102271 20069406 ~ 20071277 (-) True LOC122324484
XM_043220540.1 mRNA downstream 324503 19827100 ~ 19849045 (-) True LOC122325502
XM_043219787.1 mRNA downstream 522419 19649188 ~ 19651129 (-) False LOC122324982
XM_043219786.1 mRNA downstream 522419 19649188 ~ 19651129 (-) True LOC122324982
XM_043219773.1 mRNA downstream 526460 19628786 ~ 19647088 (-) True cad
XM_043219892.1 mRNA upstream 35502 20230975 ~ 20242311 (-) True LOC122325054
XM_043219893.1 mRNA upstream 62780 20258253 ~ 20263850 (-) True clu
XM_043220219.1 mRNA upstream 97821 20293294 ~ 20296159 (-) True ccdc25
XM_043218776.1 mRNA upstream 105933 20301406 ~ 20304874 (-) True pbk
XM_043218870.1 mRNA upstream 111166 20306639 ~ 20311285 (-) True LOC122324455
TU207179 other downstream 110571 20061602 ~ 20062977 (-) True G140277
TU207099 other downstream 113945 20057624 ~ 20059603 (-) True G140227
TU207100 other downstream 115049 20057624 ~ 20058499 (-) False G140227
XR_006247245.1 other downstream 558346 19601532 ~ 19615202 (-) False trim54
TU206747 other downstream 869580 19300376 ~ 19303968 (-) False angel2
TU207486 other upstream 777931 20973404 ~ 20975750 (-) False crnkl1
TU207613 other upstream 1003237 21198710 ~ 21278741 (-) True G140616
TU207887 other upstream 1314156 21509629 ~ 21512353 (-) False LOC122324936
TU207950 other upstream 1537073 21732546 ~ 21741004 (-) False batf
TU207987 other upstream 1645640 21841113 ~ 21841468 (-) True G140883

Expression Profile