RNA id: XM_043219909.1


Basic Information

Item Value
RNA id XM_043219909.1
length 6939
RNA type mRNA
GC content 0.46
exon number 20
gene id sash1a
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 16520443 ~ 16690139 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCAGTGAGGGAAGCGCGAGAGCCTTGTGTTGTTTGGGCGGAGTGAACCATTGCTCTGGAGAGGGGGAGGCTGGAGAACTCAAGCGCAAAAATCCGCTTCGGGCGTTTTCGTCGGTGTTCTTGCTGAATGGGGCTGTCGTGGGTACTTCTGGACGTTGTTTGTCTCGCAGCAATTGGCTTTgatgttatttatgtattgttatgatcaaaactttttttatgcgGTCGCACTAAAGAGAACTCCCTAAAGTTTGGGTTGGTTCGCACCGACGAAGTGCCAAGTGAATAGCTGAAATCTGTCCGGCTACACTTGAGTTGAAGTTTCTCTGTACGGCGCGCGCTCAGCTGGattcaaatggaaaacataTCAGCGAACTTGATGAATATGTATTTCTACTCGGAATACTTTGCATCCACTTTTGAAAACGCGTCACGGGATAGCGAAATACTATCTCCGGTTTAAAAGACGTCTGGACATATTTTATGGTTTGGGGATTAACATTCGTCAACTTGAAATTTGAGGCTGTAAATCCATCAGTGTTTGACAATGGAGGAGGATCAAGTGTCTTCTCCCGAGGAGCCGCAGGCGGTCAGCGGCGCATCATCGGACAGTTTCTCCCGGCTCTGGTCGGACGTGATGGGGATGCTGGATGGCTCTCTGGGTAATATAGATGACCTGGCACAAGAGTACTCGGAGTACTACAACACATACTTCAGCGACGTTAGCGATCGAATGGAGGAACTACGTAAGCGACAAGTGTCTCAAGAGCTAGACATGgaaaAAGCAGACACCAGCTTCAACTCTTCACAGCTACGCTCAGACATCCAGGAATCGTTCGGCATCAGCAGTGAGGTGTCCACTCCAGAGACTGAGAGAAAaattcCTCTGCACAAATCCAGCTCTGAAGATGGATCAGGAAAGTGggacaacaagaaaaaaaacaaatccttcTGGCAGAACTTTCGAAAGTCACAGAAAGGGGTCACAAGGCAAACGTCAAAAGGAGAGGACATTGGCTATGTGGCCAGTGAGATCACTATGAGTGATGAAGAACGGATCCAGCTAATGATGATGGTGAAAGAGAAGATGATTACAGTGGAGGAGGCACTGGCACGGTTAAAGGAATATGAGAGGAACAGACAGTTGAGCAGCAGTACAGACACAGCAGAGTGGACTGATGGATCCAGTCCCCCTGTTAACCTCTCCTCCGTCTACAATTCTGTGGAGCAGTCAGATGATGAGCAGGAGGACTCAGTGAAATTCAAGAGGCTTCACAAGCTGGTCAACTCGACTCGACGTGTTCGCAAGAAGCTAATTAAAGTGGATGACAGCAAAAGACATGGCTCACAAGattCACTCAGTCTGGATGCAGCTCCCTTATGTGATGACATAAATGCTCTGTATGCAGAAATCCACAAGAAGCCAGCCCAGTGCACAGACTCTTCTTTGTCCTCTCTTGCCCAAGAGCAGCTCTCTCTGGATGGGGACACGGACAGCCTAACCACCTCGCCTTCCACCAGTAGCCTTGATGCCTGGAAACCTGCTCACAAATTAGTGAAGACCCCCGGCACACATCCCCACGGCCTGATCCGCCCTCCGCGGAAGAGTAGTGCTGGATCTGGACTGGGTGTAGTGGGGGGTAGTGGCTCCTCTTTCTCCGAATTGGAGGGTTTGGGAGACGACAATGCTAAAGTCTCCCGCTCGGCTACAGACGGAGAGATGAGGAAGGCCTTGTCATCTCTATCACATGGGGTAAGTACCGACAGCGTCTACGCTTTTTATGGCCTCACTAGGCCCCGCCCAAAGCCGCACCCCCTTCTGGTGTCTTTAGATGACATTAACAGCACCAAACGGCCACCGGTCTCCGTGTGGCAGCGCAATAAGCCTGACCCAAACTACGCATACTCCACCAAGCACCTGCTCTACCAACGTTCCTGCAACACTCAGAAAACCATCGCTCCCTCTTCCACCTTGCCCCCTTCCCCACCCACCCGTGAGCTTCCACTGGCCAGGGAGAAGGGAAAGAGCTGTGGGAGTGGAGTAGTGGGCAGCTGGCTGTTTCCACCGAGGCGCCTGAAGGGAAGGACAGCGGTTAGTGAGCTCAACATCACCTACGTGGTGGAACGCAGCCTGTATGGCCACTTGAACTGGACTGGGCTGGTTAGGCCCGTCACGCTGAGCAAAGCAGACAGACGTTGGCTCCTAGAAGACGAAAGAGATGCGAACAGGAAGTGGGCATCAAGCATGGATCGTTGCACCAAGCGAGTTCTCTTACGCATCCAGCAGAAGTCTAGAACGTGTAGCTTTGGAGGATTTGACCTGTCTAATCGTTCTCTCCATGTGGTCAACACGACCGAGCCTAGTGAGCAGGAGGCTCTGTACAGGGACTCTGTGAAATCTCCCACCACATCCCGTATCTCTCTAGGAAAGAAAGTCAAGTCTGTAAAAGAGACTATGAGGAAACGCATGTCAAAGAAATATGCCGGGTCTCTCTCTGAACAGtCAAGTCCAGATGGAACACCCAGTTGTCCTCAGTCTCCTCAGCCAGACACGGACTCTTTAGAGAAGCCCAAACTCAAGGCAGGAGGGTCTGTAGAGAGTCTGCGCAGTTCCCTCAGTGGGCAGAGCTCCATGAGTGGACAGACGGTGAGCACCACAGACTCATCGGCCAGCaacagagagagtgtgaggAGTGAGGATGGTGATGATGAAGAGCCTCCGTACAGAGGCCCTTTCTGCGGCAGAGCTAGAGTTCACACTGACTTCACACCCAGTCCATATGATACAGACTCACTTAAACTTAAGAGAGGAGATGTGATTGATATCATCAGCAAGCCGCCCATGGGCACATGGATGGGTCTGCTCAATAACAAGGTGGGcacatttaagttcatttatgTGGATGTGCTGGCTGAAGAAGAGGAGAAGCCCAAACGAGCGGTtcggaggaggaggaagggcAGGCCGCCCAAACCTAACTCAGTCGAGGAGCTTCTGGAGAGAATCAACCTGAAGGAGCACATGCCTACATTCCTGTTTAACGGGTATGAGGACCTGGACACGTTTAAGCTACTAGAGGAAGAAGATCTGGATGAGCTCAACATCAAAGATCCTCAACACCGTGCTGTACTGATGACCGCTGTAGAGCTACTGCAGGATTACGACAgcAGCAGTGATCCGGAGCGCAGCGCCCTCTCTGGCTCTCAGGAGAAACTCCTCTGTGAGGGGCGTGGCCTCATGGCTGACTCCCCACGGGACTCTGGTTGCTACGAAAGCAATGAAAACCTAGAGAATGGTAAGAGCCGCAAGGCCTCACGCCACAGCCGTGGTTCATCTGGATTTGATTGTGGGGGTGTAAAGTCTCCAGACTATCCCACTCTTCCCATGACTCACTCCACTGAAGCTCTTCAGCAGCAGGCCAAGAAGGACCGCAAGTTCCCAAAGACCTTTCTGCAACGGCCTATAAAGGGCTTCAGTCTGCGAAGCCTCGGCCTCAAGAAGGGCTCCAAAGCAGGACAGACCTCCCGCATACCGGTCAGCCGAAGCTGTGAGGAGTTGGACGGTCCCCAAGAGACCCCTGAGTCTTGGAAGCGCTCGCATTCTCTGGGGGATATACACTGGGAGCAGGCTTTCGATCAGAGGAAGGACCAGAGTTGCAGTGAGGATAAAGGCAGGccagagagcaaaaaaaaagaaaaagccgGTCTTGTAGAATTAAAACTGGACCAGAGTGGCGATAAGGCTGGAAGAGAGACAGGTTTACTGCAGAGACCTATGGTTCCCACACAGCTTCCTCTCAGCCCGGTCGGTCTATTTCCTGCCGCTCAGACCTTGAACCGCCAACCGGTTTCTGCCCCAACTAGCCCTGCTCCACGGACTCACCCTAAAAAGCCACCTGTCCCACCTCCTGTGCCTGCTAAAAAGTCCAAAGAACGTCTGCCGAACGGTCTGCGCCATCCTCCGCTAGTGCTGTCCGGTTCGGTGCCAAATACACCAATTCTACCCCCAAAACCCATTTACACCCCAACCACTCCCTCTGAGACTTCCCCGTCAACCCCATTATCACCAGGTGAATCTGCAGCGGCTCTGAGTCCACCCTGGCTGTCTGACCTACCTGAATCAGCATGTCCTCAGATTCATGGAACTAAAGTCGCCCTCAGCAGGAAGATCTCCCATGCCAAAATGACTGACCTAGAGACTCTGCTGGAGGACAGGATGCACTTGGAAGGCATTGATCTCACCGAAGAGCCGTATTCTGATAAACACGGCCGCTGTGGTATTCCTCAGCTCTTGGTACAGAGGTACTCAGAGGACTTTCAGCAGCCAGTGAAGGACGTGGCGTCCAGTCTGGATCAGATCAGAGTTAAACAACTCCGCAAGGAGCACCGCATGGCTATTCCCTCAGGAGGTTTGACTGACATGTGTCGGAAGCCAGTGTCTCCTGTTCACGTGAGCTCAGTGTCTGATTGGCTCGTGTCGATTGGAATGCCCATGTATTCTGCCCCCCTATTGGCTGCAGGCTTTGACACGCTGGATCATGTGTCATCCTTAAATGAGGTGAAAGCGAGGGAAGCAGGCTTGAAGGAGGACCATCACATACGTATTCTCCTCAGTGAAGCCCAGCTTGTCACATCCAGCAGCTCAGGACAGTCATAATACTAACACGAGCAGTTAAGGACttgattaatttgatcaaattttgCTGGTAAATGGACAGACCTGGACAACAGCTGCCGAATTTTCTCCCACCTTTCTGTCTTATAATCTCAGCCTTTTGGCATTTTCAGAAATGACTGATCTGGCTTCTAAGGACTGTTATTGTGGGCCTATCAACAGATGTTTCCATAGAAACATCTAGTTTTGGCCTGAAACATCTGCCTGTCGAAagaaagcacactttttttctgagaatttATGCTTTTGTATGAATATAAAGACCGTTCTGAATCCTTTTTCAGGAAGTGTaagatttatttagaaaaaaaaaactgtaaaagaaaagtttttagtGCTTATTGAAGCACACGAGTATCACGAGTATGTCACCTGGCCAAAGCAATGTCATTTCATGCAGGTTTGTTAATATAAAACTACTTTATCTCTCAAagcatacagtatgtatatgaAAAGATGTGTACTCTTGGGTAAGTCATTCCCGAAAGCATGATGTTGCCATATGGGGATATTCAGAGCAATGCATATTTTGATTTCAGGCCAATAGCTGGCCTCGGTTTTAGCAAATATGTACTATGTTTGTAATGTTtcgtttgtttctttcttcaagGTTACATTTTAGCATCACTCCTTATAATCTGCttaatataatactgtatattccCCGCACATTTAATCTTCCAGTCTTCTAAACACACAATATTCAGAACGCATCACTTACTCGGCTGTTGCGGCATATCAGTTTATTACTGTATCAGCTGTATCAGTTTATGTTGCCTGTTATCTTGTTACTCTTGCATATTGTGTACCTCTGATCGTACTCAGCATTGATGGCAGTGATGCATAACACAGCTGTAATATGCTTGCTGGAGTGAAATGTGTACaggtgttttattttcttttgtccCAGATTGCCTTGCACTTTGACTTGGGCGTTGAAGACATTTTGAATCGTAGGAATAAACTTGAGCTCTTAAAGCACACAGTCTTAGCCTTAAAATACAACTAAATCAAAACTGATATGAACTAACTTAGAGGAGTGTTCTAGTTACATTAGCGAACTGGTGCTTAACCCAAAAGTGTTCGACATTGGGAAGATGAAATGTCCAATGaagcattgtttatttttgtcattcagaaCACAATGACAATGTGTTTCAGGAAGAATAAGGTGTTAGGGACTTAACTCTCCTTACACACATCTGGTGATTCTCTTACAGTGTGTAAAGACTGAAAACTGAGCGTGAAGCGCAACATTAGCTTACGTCACTTGGGCATTAGCATGACGTCATCACTGCTCACAGATCGAAAGCATTACATCAATCCAAGTTAAGCACAATGAAACGAGTTTCTCCCACAATCACTCTCAGGCTGCAAATCCTTTGGTTTTCCATTTACAAGACGACACCATTAATGCTTCCCTAAGGCCTTGCGGTTTCTAGGGAATAGTTTTTTTGAAAGGTTGCTTTAGAACTGTGTTTCTCCCTCATGCCATTCACTCTTTTGTATCTAACGCAGCACAATTTATAGGCCGCAATGCTCGAGGTTTTAATGAACGTTTTAAGCAGTAGAGGATCGATCGAGTCTTTTTGTATCAGAATGGATGCCTTCAAATTGCTATCAGTTGAGTGCTTTGATAACAATGAGGCTTTTTATGTGATAAAAAtcgaaaaaatatatttcatgaaatgttactgtaaaaatgcactttatggaagaatgaaagtttttttaattccattgtGGAGAAAATGAGATTACAAATTGAcacatttgcagtttttttttaaaagacgttTGTTTTCAGGTCAGATGTTGATGGTTGAGGTGAGCTGTTTAAATATCAAatctctgttaaaaaaaaagaattataatcactttttaattaattaaagaacTAACCATGACCAGTTAATTATTTCAACTTAAATGCTATAAAACTTGGTCTTAATTACATATATGAAATGATTAACTGAGGTTGCACATTCTGTATATGtaattgatatttaaataacttatttttgcttttacatcaaatgtaattattagcTGTACTATACATCATAGAGCAATACTCTTTCACCTATAGTTAGTTAGTGACATGCTCCAGTGaccattgtaaaatatatgtataaaaatgattttatctgGTTTAAGTTCGCTAATGATTATCTATAAAGGTTTTGCTTGtgtatttacaaacaaaaatgtcttaaaatatttgTCCCTTTGaggtgtaataaaaaaaagaatatccTACACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205289 lncRNA downstream 65040 16454884 ~ 16455403 (-) True G139032
TU205285 lncRNA downstream 68550 16450526 ~ 16451893 (-) True G139029
TU205207 lncRNA downstream 194690 16323406 ~ 16325753 (-) True G138983
TU205210 lncRNA downstream 194690 16324662 ~ 16325753 (-) False G138983
TU205179 lncRNA downstream 303727 16214344 ~ 16216716 (-) True G138960
TU205435 lncRNA upstream 281519 16843218 ~ 16845168 (-) True G139139
TU205444 lncRNA upstream 288855 16850554 ~ 16946540 (-) True G139145
TU205448 lncRNA upstream 297644 16859343 ~ 16860256 (-) True G139147
TU205451 lncRNA upstream 298627 16860326 ~ 16896383 (-) True G139149
TU205449 lncRNA upstream 328240 16889939 ~ 16891460 (-) True G139148
XM_043219918.1 mRNA downstream 673 16475351 ~ 16519770 (-) False usta
XM_043219917.1 mRNA downstream 679 16478604 ~ 16519764 (-) True usta
XM_043219398.1 mRNA downstream 76612 16435221 ~ 16443831 (-) True hpcal1
XM_043219399.1 mRNA downstream 76614 16435221 ~ 16443829 (-) False hpcal1
XM_043220534.1 mRNA downstream 153644 16347201 ~ 16366799 (-) True fndc1
XM_043219757.1 mRNA upstream 129608 16691307 ~ 16760481 (-) False stxbp5a
XM_043219756.1 mRNA upstream 129608 16691307 ~ 16760481 (-) True stxbp5a
XM_043219760.1 mRNA upstream 129608 16691307 ~ 16760480 (-) False stxbp5a
XM_043219758.1 mRNA upstream 129608 16691307 ~ 16760480 (-) False stxbp5a
XM_043218921.1 mRNA upstream 204016 16765715 ~ 16798477 (-) True adgb
TU205287 other downstream 58227 16455468 ~ 16462216 (-) True G139030
TU205233 other downstream 153671 16364810 ~ 16366772 (-) False fndc1
TU205232 other downstream 154976 16364810 ~ 16365467 (-) False fndc1
TU205229 other downstream 157131 16362131 ~ 16363312 (-) False fndc1
TU205141 other downstream 484190 16028253 ~ 16036253 (-) False LOC122324507
TU205714 other upstream 785107 17346806 ~ 17428071 (-) True erh
TU205713 other upstream 864169 17425868 ~ 17428071 (-) False erh
XR_006247229.1 other upstream 1248575 17810274 ~ 17824201 (-) False swt1
XR_006247304.1 other upstream 1781773 18343472 ~ 18350122 (-) True adgrf3b
TU206351 other upstream 1844328 18406027 ~ 18446949 (-) False G139706

Expression Profile