RNA id: XM_043219918.1


Basic Information

Item Value
RNA id XM_043219918.1
length 2211
RNA type mRNA
GC content 0.44
exon number 9
gene id usta
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 16475351 ~ 16519770 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AATTGTCAAAAGCTGCTCAGTTATGAACTCGATTCTTGGctgaatatttgtttaattaaaattgttgcTATTGTCTCTGCTGCCCATGGCTTCAGGATAACAACGTGACGTGGAAATAGGCTACAAATGCACAGCTGTTTTCACAGacagatattattttatttgtattatttattcaaatagttTGCCGCTAAATGCGTGTGTTGAATTAGTTTTTGTCAGACTGCACCGACGCTTTCCCGCGTCTTCCGCCTGGTGGTGCTAAGAAGCACAAGGCAGCGCGTGAGCTCGAGTCCATCCTCCGGTTGAACTTTTTCCTCCACATTCAGTAATCTGACACCGACACTAACCCCAAAAAGCAGAGGATGGATTCCCAACTTCATTCGCAAAAATAGCTCAGCCAGAGCAGACGGGAAAACACGGCCGAGCTAGGGGGGCCAAACATCTGAACGCGTGCGCTCGCGTGCATCGATCTGTGAAGCGtgtttggtttttgtttaaatgttggCTAAAAAGTTTTTATCTAAAGAGGCGGATGGGTGACGACCATTCTCGGCGCTTCCATGTGAGGAGACGATGAAGAATTACAGCAGCAGTCCCCGTCTAAACAATCACAGCGCGAGTCACAGCACTGATCGGAACAGCAGGAAGAGGTTCTGGTTCTCGGCTCTAGGGCTTCGCTTCTCTCTGCGCGATTATGGTTTCTGCATGGCCACACTGCTGCTCTTCTGTCTCGGCTCACTGTTTTACCAGCTGAACGGAGGACCCCCTAAAGTTCTGCTGGAGATCAGGCAGTATCTCGGAGAATCCACTTTTGTTGACGACCACGGGCCTCCTACACAAAGGGAGCTGCCATTCCCAAGTCAGGTGATCTACAACAGGGTTGGCAAGTGTGGAAGTCGAACAGTTGTCCTGTTGCTGAGGATTCTGGCAGAAAAGCACCAGTTTAACTTGGTGTCCTCTGACATCCATAACAAAACCAGACTCACAAAGCATGAacaggTGGATTTGATGAGAAACATTAGCACTATTCCACAGCCTTTTTTGTACACCAGACATGTTCACTTTCTCAATTTCACAAGGTTTAGGATAGAACAGCCTGTCTACATAAACATCATCAGGGATCCTATTAACCGTTTCCTCTCCAATTACTTTTTTCGTCGTTTTGGGGACTGGAGAGGAGAGCAGAATCACTTGATCCGCACACCCCAGATGAAAGATGATGAGCGATATCTGGACATTAATGTTTGCATCATGGAGAACTACCCAGAGTGTTCTAACCCACGTCTCTTTtacattgttccatacttttgtGGACAACACCCTCAGTGCAGGGAGCCGGGTGTTTGGGCTGTGGAGAGGGCCAAACAAAACGTTATAGAGAATTTCCTACTTGTGGGAAttctggaggagctggaggatgTGTTGCTCTTGCTGGAGAGACTCCTACCTCACTACTTCAGTGATGTCCTAACCATCTACAAGAGTCcagCATTCTGGAAGATGGGGAACCTTACAGGCACAGTGAAGAAGCACATGCCCACTCTAGAGGCCCTACAGCTAAAGGCTGGCAGTGCACAGCTTGTCCTGGGCCTCCTCCCCTCTGTCACAGCGAATGAGAGACGCCTACCTTACGCCCACTAACCTGGAAAATATTTCCCACCTTTTCCATGAGCAGATTCTTCTCAAAAGAGAATGAAAGGTGAACAGCACAGGAAAAGGACACTTAAATCACCGATATTTTTAGccactgtaattattttaatgaaacggGTCTAATTTAGACATgatgtcatatttattaatatatgacATTCTTTAGACAAACATGTTGCTATGACAACTGCACACCACTACAGCATGAATCTACTATCCCTGCTTCTTTGgtccaaaaacacacaaaagtatTAGCTTGagaaaaacactaaatgcattGATTATACAGTCAATGAAGAGAaacatattacaatttttaaaaagtcaagcACTTTTCAAAATAGTATCTATCAAAAATGCTTGAACTCTTCTACATTACATTCCTCATGTCATGCAAACTGAGGGAGAATACGGCACagtaagagaaaaataaaaattttaaataacaaaataatgcaaaagcaCACAGAATAAACAAGTATCGAATATTATAAAATACGGTTACTGTTTCCTATGAACAGTACAGATCAATTTGGAGCTAAACCCTGAGACGCA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component
GO:0008146 sulfotransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205289 lncRNA downstream 19948 16454884 ~ 16455403 (-) True G139032
TU205285 lncRNA downstream 23458 16450526 ~ 16451893 (-) True G139029
TU205207 lncRNA downstream 149598 16323406 ~ 16325753 (-) True G138983
TU205210 lncRNA downstream 149598 16324662 ~ 16325753 (-) False G138983
TU205179 lncRNA downstream 258635 16214344 ~ 16216716 (-) True G138960
TU205435 lncRNA upstream 323448 16843218 ~ 16845168 (-) True G139139
TU205444 lncRNA upstream 330784 16850554 ~ 16946540 (-) True G139145
TU205448 lncRNA upstream 339573 16859343 ~ 16860256 (-) True G139147
TU205451 lncRNA upstream 340556 16860326 ~ 16896383 (-) True G139149
TU205449 lncRNA upstream 370169 16889939 ~ 16891460 (-) True G139148
XM_043219398.1 mRNA downstream 31520 16435221 ~ 16443831 (-) True hpcal1
XM_043219399.1 mRNA downstream 31522 16435221 ~ 16443829 (-) False hpcal1
XM_043220534.1 mRNA downstream 108552 16347201 ~ 16366799 (-) True fndc1
XM_043219400.1 mRNA downstream 153932 16315018 ~ 16321419 (-) True LOC122324754
XM_043218621.1 mRNA downstream 160628 16310886 ~ 16314723 (-) True acat2
XM_043219908.1 mRNA upstream 673 16520443 ~ 16690139 (-) False sash1a
XM_043219907.1 mRNA upstream 673 16520443 ~ 16690138 (-) False sash1a
XM_043219905.1 mRNA upstream 673 16520443 ~ 16690138 (-) True sash1a
XM_043219906.1 mRNA upstream 673 16520443 ~ 16690137 (-) False sash1a
XM_043219914.1 mRNA upstream 673 16520443 ~ 16690136 (-) False sash1a
TU205287 other downstream 13135 16455468 ~ 16462216 (-) True G139030
TU205233 other downstream 108579 16364810 ~ 16366772 (-) False fndc1
TU205232 other downstream 109884 16364810 ~ 16365467 (-) False fndc1
TU205229 other downstream 112039 16362131 ~ 16363312 (-) False fndc1
TU205141 other downstream 439098 16028253 ~ 16036253 (-) False LOC122324507
TU205714 other upstream 827036 17346806 ~ 17428071 (-) True erh
TU205713 other upstream 906098 17425868 ~ 17428071 (-) False erh
XR_006247229.1 other upstream 1290504 17810274 ~ 17824201 (-) False swt1
XR_006247304.1 other upstream 1823702 18343472 ~ 18350122 (-) True adgrf3b
TU206351 other upstream 1886257 18406027 ~ 18446949 (-) False G139706

Expression Profile