RNA id: XM_043219919.1


Basic Information

Item Value
RNA id XM_043219919.1
length 3049
RNA type mRNA
GC content 0.43
exon number 6
gene id clic5b
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 22670042 ~ 22683646 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTATAAGTGACCTGCCATCAGGTGAGGGCTGAGGCTCGACTTTCCAACTTCTCCAGACTTCCCCGCACTTCTCCACAGCCCTGGAAGAGCTTTAATCAGCATGGCTACAAACGCCCAAGAAATCATTTATGAACAAATAGAAGAGACTAAAGAAAACGTATACGAGAAGCCGTTCGAGAGCATAAATGACAACCCGGAGCCGAAATACGAGAATCAAGGCGTGAGTAAGGAACTCCCCGAAGAACCGATGTACAGCACGATCAATCAACCAGACTATATGGACACGAGAGGAACATCTCAAGACGGAGAAGAACAGCCTTCACCTCCCAGTGAACCAGGAGAGCAGCTCGAGAGCGAGATCATGGTCGCCTCTCTGCAGAATGGAGACGTTTACGGATCTTCATCTGTAGAAGAAAGCGGAGACCCATGTGATGACCAGCCCTCGTTGGTCCACGAAGACCTGCTCATGGCGTACAGTCTCCCAGAAGACGGATCTCCCGAACCCGAGGAGGTAGTTGACTACAGCCTGAAGGACGTGGAGATCCGCGCCGCGGAAGAGCCAGCGGCAGTCTCCGACCAGACTCAGCCGAATATTGCGCTTTTTGTGAAGGCCGGTTGTGATGGCGAGAGCATCGGAAACTGTCCGTTCTCTCAACGCCTCTTCATGATCCTCTGGCTCAAAGGCGTGGTCTTCAACGTCACCACTGTTGACCTGAAGAGgaAACCAGCTGATTTGCACAATTTGGCTCCGGGCACTCATCCTCCTTTCCTGACCTTCAACGGTGAGGTGAAGACAGACATTAACAAGATCGAGGAGTTTCTGGAGGAGGTTTTGGCACCACCAAAGTACCCCAAACTTGCAGCCAGGCACAGGGAGTCAAACACAGCTGGGAATGACATATTTGCAAAGTTCTCAGCTTTCATAAAAAACACTAAGCCAGATGCGAACGAAGCTCTGCAGAAGGGTCTGACAAAGGCGCTCATGAAGCTGGACGAGTACCTGAACAGTCCTTTGCCTGATGAGGTAGACGCCGACAGCATGGAGGAGGAGAAGGCCTCCGACCGCAGGTTCCTGGATGGGAATGATCTGACTCTGGCAGACTGCAACCTTCTGCCAAAGCTCCACATAGTGAAGGTCGTGGCCAAGAAATATCGGAACTACGACATCCCCAGTGATTTGACAGGCGTGTGGCGTTACCTGAACAATGCGTACGCGCAAGAAGAGTTCACCAACACCTGTGCCGCCGACAACGAGATCGAACTAGCATACATGGATGTGGCTAAAAGGCTAACTAAGTAAACCGATGAACAAATTCGACGCATATAGACTTGGGGTAGCTCATTTCTCGGGGGAAGAGATGACGTTTTCTATGTAATTCAAAGCTGTTGATCCCGAACTACAAGTCAGTAGtttcattcatccagggtcctGTTAATCAATAAGGGCCGGTGCTCTGATGTAATTACCGTGAAATGTGAATACAAAATATCAGCTCATATTCACCAGCTCTCGTAAACATTGTCCCAAGTGACTTCTATTGTATCTCTATTTAAAGAGATTTCACATtactgttttctgttgttttactCTGTTTATCATATCATGCACTGATTCTCGAGGCACTGGAACAGCATGCCCCACAACTTTAATTGCATCGAGACCGAATTAAAGATTTGCCACTAGAATATTTACATCACCTTCTGTCAGCCCAAAACATAATTCTTTacaaagatttaaatatatataaaactaatatccaaataataaattgacacataccttactttttaaaatcagagGTAAAATTAACAATGTCTCTTAAGTGTttaattaatgtgaattatactattatattagAAAAATGATGCATCTGAATATATCTTAAAGTTTAATTTCCTGTCTGCAGTGTCACGCGACCCTTCAGATATCTTACAATATGCTAAAAATTACTTACCAGtgttaaaacagtaatattgttgtggaaattattttaaaaaagtcattatttgcaAGTCTTTACTGAcgcttttgatcaatgtaatgcatccttgctgaatgaatatatatatatatatatatatatatatatacatatatacatatatacagcactcacaaacaaacatttgaatgatagTATGATAGTATAGAATTTTGTCGGTACTCAAGAATCGGTGCATTGCATAACCTGTCGTATATACGTGACAGCCGTTTAAGCATTTCAAATCCGTATTTCATCTCCAATCGTTTTACAGTATCTGTCGATATTGCTttctgttatgtttttgttattatttgtgtacAATGGGTAAAAAAGATCTCTCGTGAGCAGCAGGACAAGCGAAGCGAAAAGGTTGGTCCGTCCCGGGCAGCTTTATAACCAATCATACAACATTTGTACATgtctcatgcatttttttacccCAAAGGAGCACTCGTCTTTAAATACATGATGATTTAATGAGGTGCTAATTTAATATGTGCCTTCGTTAGAAGAAATGCAGTGTGGCAAATCCAGCGTATTATTGCTGTCATTGATCATTTGTACACGAATATCCTGCTCTTTTAAAGTTTCCGCAAACGGTTTACAGAAATATCTCGAATCTTCATTGCCTCATCATGTAATTTGCTCGTAAAGTACAACTTTTTCTCAGTCTTTCCTCTGTTATTCCTCACGACTCGTATCATTTTGTCTTCTCGTTTCATTTTGGCTTATCTCAAAGCGCTTAACATCATTCGGCGCTGGATACATcatgctgaaatatttattcacaGCCCCGTTTATAGGAAATTAACGAGCTGACATGGAAAGGAGATTCGGGATACACGGCGGTCCACCGAAATGGAGAATAAGGAAATCTGATCGGGCGTCTGTCCAGGTCTCCTCCTCTCCACTTAGCACTGCTGGAATATCGTAGGGCCCATGATAGGTCCTTGTGGAGCTCCTGCTCTTGTGTGGTTTGGAAAAGCGTTTGATATGAAATGAGAGTGTGGCGCCAGAGAGGCCTGTTCCGAGTGAAGctctatgaataaaataatattttcaca

Function

GO:

id name namespace
GO:0006821 chloride transport biological_process
GO:0016020 membrane cellular_component
GO:0005247 voltage-gated chloride channel activity molecular_function

KEGG:

id description
K05025 CLIC5; chloride intracellular channel protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208473 lncRNA downstream 7801 22660615 ~ 22662241 (-) True G141255
TU208238 lncRNA downstream 128348 22541463 ~ 22541694 (-) True G141083
TU208237 lncRNA downstream 128892 22540688 ~ 22541150 (-) True G141082
TU208235 lncRNA downstream 129715 22539920 ~ 22540327 (-) True G141080
TU208234 lncRNA downstream 130128 22539593 ~ 22539914 (-) True G141079
TU208522 lncRNA upstream 55995 22739641 ~ 22740927 (-) True G141283
TU208585 lncRNA upstream 147268 22830914 ~ 22831421 (-) True G141307
TU208599 lncRNA upstream 195086 22878732 ~ 22890133 (-) True G141319
TU208601 lncRNA upstream 200416 22884062 ~ 22890133 (-) False G141319
TU208609 lncRNA upstream 204874 22888520 ~ 22894015 (-) True G141324
XM_043220550.1 mRNA downstream 102911 22557504 ~ 22567131 (-) True opn8a
XM_043219692.1 mRNA downstream 117768 22541777 ~ 22552274 (-) True opn8b
XM_043219741.1 mRNA downstream 164240 22498745 ~ 22505802 (-) False LOC122324950
XM_043219740.1 mRNA downstream 164240 22498745 ~ 22505802 (-) True LOC122324950
XM_043219318.1 mRNA downstream 199772 22394835 ~ 22470270 (-) True atad2b
XM_043218592.1 mRNA upstream 86273 22769919 ~ 22776432 (-) True lin9
XM_043220475.1 mRNA upstream 93475 22777121 ~ 22791942 (-) True parp1
XM_043219706.1 mRNA upstream 109591 22793237 ~ 22802967 (-) True si:dkey-206f10.1
XM_043219255.1 mRNA upstream 157250 22840896 ~ 22845553 (-) True pomcb
XM_043219252.1 mRNA upstream 175830 22859476 ~ 22877145 (-) False snx9b
unassigned_transcript_2512 other downstream 554253 22115707 ~ 22115789 (-) True trnal-uaa_37
unassigned_transcript_2511 other downstream 554922 22115038 ~ 22115120 (-) True trnal-uaa_36
TU208103 other downstream 556998 22112602 ~ 22113044 (-) True G140972
TU207994 other downstream 823125 21845806 ~ 21846917 (-) False LOC122325102
TU207987 other downstream 828574 21841113 ~ 21841468 (-) True G140883
XR_006247154.1 other upstream 705523 23389169 ~ 23401391 (-) False mcm9
XR_006247155.1 other upstream 706819 23390465 ~ 23401391 (-) False mcm9
XR_006247156.1 other upstream 706821 23390467 ~ 23401391 (-) False mcm9
XR_006247216.1 other upstream 1108431 23792077 ~ 23823050 (-) False tbc1d32
TU208856 other upstream 1321041 24004687 ~ 24006665 (-) True G141502

Expression Profile