RNA id: XM_043219941.1


Basic Information

Item Value
RNA id XM_043219941.1
length 1416
RNA type mRNA
GC content 0.53
exon number 8
gene id actc2
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 6317799 ~ 6321279 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATTGGCCGCCACTCAAGGCGCTGTCTACCATTCACTCTCCAAGGGAACCGGCTCCTGGTGCTGATCTGACCCCCAGCTGACACCATGTGTGACGACGACGAGACCACCGCTCTTGTGTGCGACAATGGCTCCGGCCTGGTGAAGGCTGGCTTTGCCGGAGATGATGCTCCTCGCGCTGTCTTCCCATCCATCGTTGGTCGTCCTCGCCACCAGGGTGTCATGGTAGGTATGGGACAGAAAGACTCCTACGTGGGAGATGAGGCTCAGAGCAAGAGAGGTATCCTGACTCTAAAATACCCAATTGAGCACGGTATTATCACCAACTGGGATGATATGGAGAAGATCTGGCACCACACCTTCTACAACGAGCTGCGTGTGGCCCCCGAGGAACATCCCACCCTGCTCACTGAAGCCCCTCTTAACCCCAAGGCCAACAGAGAGAAGATGACGCAGATCATGTTCGAGACCTTCAACGTTCCCGCCATGTACGTGGCCATCCAGGCTGTGCTGTCCCTGTACGCTTCTGGCCGTACCACTGgTATTGTGCTGGACTCTGGAGATGGCGTGACCCACAATGTGCCCATCTATGAGGGTTACGCTCTGCCCCACGCCATCATGCGTCTGGATCTGGCCGGTCGTGATCTGACTGACTACCTGATGAAGATCCTGACCGAGCGTGGCTACTCTTTTGTGACCACGGctgaacgcgagaTCGTCCGTGATATCAAGGAGAAGCTGTGCTACGTCGCGCTGGACTTTGAGAATGAAATGGCCACCGCTGCTTCATCCTCTTCTCTGGAGAAGTCCTATGAGCTGCCTGATGGTCAGGTCATCACCATAGGAAACGAACGCTTCCGTTGCCCAGAGACTCTCTTCCAGCCTTCTTTCATTGGAATGGATTCTGCTGGTATCCATGAGACCACCTACAACAGCATCATGAAGTGCGACATTGACATTCGTAAGGACTTGTATGCCAACAACGTCCTGTCTGGTGGCACCACCATGTACCCAGGTATTGCTGATCGTATGCAGAAGGAGATCACTGCTCTGGCCCCCAGCACCATGAAGATCAAGATCATCGCTCCCCCTGAGCGTAAGTACTCCGTCTGGATCGGCGGCTCCATCCTGGCTTCCCTGTCCACCTTCCAGCAAATGTGGATCAGCAAGCAGGAATACGATGAGGCTGGCCCATCCATCGTCCACAGGAAGTGCTTCTAAGATACCCTTATCACGCGACAGATTACGAAATCCTCAACATTACCTCCGCCCGTTAACGCGCGCAGGCAGATTTCGCCTTTGTTTTTCCTTGTACAGTATGTTTACACCAAAGTGCAATTTGTTTGTAGTTATTTACTGgatcataaatacatttgtacgTGCATATTTattggtttttaaataaacaagacCGGGAAA

Function

GO:

id name namespace
GO:0036302 atrioventricular canal development biological_process
GO:0045471 response to ethanol biological_process
GO:0055003 cardiac myofibril assembly biological_process
GO:0055008 cardiac muscle tissue morphogenesis biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0042493 response to drug biological_process
GO:0030240 skeletal muscle thin filament assembly biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0003272 endocardial cushion formation biological_process
GO:0030049 muscle filament sliding biological_process
GO:0060048 cardiac muscle contraction biological_process
GO:0005829 cytosol cellular_component
GO:0070062 extracellular exosome cellular_component
GO:0031674 I band cellular_component
GO:0042643 obsolete actomyosin, actin portion cellular_component
GO:0017022 myosin binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
K12314 ACTC1; actin, alpha cardiac muscle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201576 lncRNA downstream 39735 6274754 ~ 6278064 (-) False G136460
TU201549 lncRNA downstream 70908 6246263 ~ 6246891 (-) True G136440
TU201506 lncRNA downstream 112361 6205090 ~ 6205438 (-) True G136416
TU201487 lncRNA downstream 172138 6128498 ~ 6145661 (-) True G136398
TU201458 lncRNA downstream 267166 6048968 ~ 6050633 (-) True G136388
TU201648 lncRNA upstream 62153 6383432 ~ 6398110 (-) True G136506
TU201900 lncRNA upstream 805934 7127213 ~ 7130585 (-) True G136689
TU201908 lncRNA upstream 812469 7133748 ~ 7136993 (-) False LOC122324389
TU201909 lncRNA upstream 812469 7133748 ~ 7139291 (-) True LOC122324389
XR_006247160.1 lncRNA upstream 814495 7135774 ~ 7138782 (-) False LOC122324389
XM_043218868.1 mRNA downstream 1985 6312330 ~ 6315814 (-) True gjd2b
XM_043219272.1 mRNA downstream 60352 6254715 ~ 6257447 (-) True cgrrf1
XM_043220009.1 mRNA downstream 85132 6218511 ~ 6232667 (-) True nid2b
XM_043220008.1 mRNA downstream 85132 6218511 ~ 6232667 (-) False nid2b
XM_043220012.1 mRNA downstream 119644 6193434 ~ 6198155 (-) True zfp36l1b
XM_043218759.1 mRNA upstream 29551 6350830 ~ 6368755 (-) True meis2b
XM_043218758.1 mRNA upstream 29551 6350830 ~ 6367966 (-) False meis2b
XM_043218837.1 mRNA upstream 89683 6410962 ~ 6413971 (-) True si:dkey-63b1.1
XM_043218729.1 mRNA upstream 111483 6432762 ~ 6451463 (-) True LOC122324366
XM_043220304.1 mRNA upstream 146500 6467779 ~ 6470069 (-) True glrx5
TU201577 other downstream 14823 6274754 ~ 6302976 (-) True G136460
XR_006247217.1 other downstream 386677 5924475 ~ 5931122 (-) False zpax2
unassigned_transcript_2505 other downstream 491068 5826620 ~ 5826731 (-) True trnal-caa_53
unassigned_transcript_2504 other downstream 491576 5826112 ~ 5826223 (-) True trnal-caa_52
unassigned_transcript_2503 other downstream 492084 5825604 ~ 5825715 (-) True trnal-caa_51
TU201658 other upstream 91200 6412479 ~ 6414013 (-) False si:dkey-63b1.1
TU201662 other upstream 111551 6432830 ~ 6451499 (-) False LOC122324366
TU201897 other upstream 804469 7125748 ~ 7228963 (-) True G136688
TU201939 other upstream 975582 7296861 ~ 7305724 (-) True G136707
TU201958 other upstream 1014872 7336151 ~ 7340436 (-) False LOC122324874

Expression Profile