RNA id: XM_043219946.1


Basic Information

Item Value
RNA id XM_043219946.1
length 3004
RNA type mRNA
GC content 0.42
exon number 10
gene id si:dkey-71h2.2
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 10839146 ~ 10870735 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGCCACACGCAGGTCGCTCCAAGTTTCGCATGACTGTTTTTCTCATTGGATCAGTCACGAAAcgccatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgaaggGAGCAGCTCGTGGATCTCCGTCGGTCGGCCAGTGAAGGGTTAACGTTACTGTACAGATCCCGGACTGCGAGCCGGCGTCTATAGGCTGCTCGTGTCCGCTCGCTCCACTGCTCGCTGCGCGCTACTCTACTTTCCTCATCCCCTCAGCGAGGACCAAGGAAGAGCTCTGCACCTGCTCTGCAGACGCCTTCCAGCATGGATGCGTTAAAATCCGCCGGAAGAGCAATAATCAAAAGTCCTGGAGTTCCGCGGCACACATGGGGAACGTCCAAGCACGAAAaacTCCCAGAGAACTGGACGGACACCAAGGAGACACTCTTGGAAGGGATGGTGTTCAACGTGAAGTATCTGGGCATGACTCTGGTTGGCCAGCCTAAAGGAGAAGACATGGCAGCAGCTGCTATCAGGAGGATTGTAGCCACGGCTCGGGCCAGTGCAAAGAAGTTTCGAAAAGTGACCCTCACCGTCTCCCCCAAAGGAATCGTCATCTCAGACACCGAGGCCAACGACCTCATTGAGGACGTTTCCATTTACAgAATATCTTACTGCACAACAGACAAAACTCAGGATAAGGTCTTTGCCTACGTCTCCCAAAGCCAGTTCAACGAAACTCTGGAGTGCCATGCCTTCCTgtgccaaaaaaagaaaataGCTCAGGCTGTGACTCTGACAGTTGCACAAGCGTTCAAAGTAGCTCTGGATCTGTGGGAGGTCGCACAGGAAGACAAAAGTAAGAAAACCCGCACATGCTACACCTGTTCAGACCCTGAATCTCAGCCTGAATCTGATGCAAACGTTGTTTCAGAGGAGGAGAAGACTCAGGCTCTGATGGAGCACAAACTTAGGGAGCCCTTCTTCCCTTCCTTCCTTTCACCATCTCCACGCAGCAAAGCTAGAAGACGACCAATCAAACACGACTCCTGGGATGCAGAAGATGGCCTTGATGATGCATTTTCAAGCAATATGGAGGTGGAGGAGATGGACGCAGACTGGCAACATCCCGCAGCAGAACCGTGTCTGAGGATGCAGCTGTGAGTCCAGCGGAAGAAGATCTCCTGTCCTTCAGCAGTGAAGACTCAGACTGaacgcgcgcgcacgcacacgcacacacacacacacacacacacacagatcactgTCACCAGCCTATCAGAAAGTGTCCTGTACACACAGCACACCCCAGCACCGCACACAACGTGCACCGAACGCCTCAGCGATGGACTCATTCACACAACTGCCACTTAAAACAGCAACAGCACCGCAAAACAGCAGCATAGACGTGCATGATTCAACTGTAGAACTCTTGAACGCCAATGTACTTACATTATAATACCGCAAGTTCAGGGTAAGTACTTGACAAAACAACATGTGTGAAACTGCATGTTGTTATATTGTATTCAAGCGTTTGTGGAAGTAGGTCTGCTACATATATCTgtaaaaagtgtacattttttcaACACACAATGGTGCTATATTGTAGATACTTGggttatattatttaaatatacagtaactgCAAACATGTACTTGAAAGGGAGACCAAATGTACATTCCACAAAAAACAGCCCAGACTGAACTTTCCACTGCAAAGCTCTCTGGGTAAACAACCTAGTGCTAGAGCGTTAGGGAGCTATAGTGAACGTTTACAAATAGAAGGACGTAGAGTTATTCAGGACCGATATTCAATTTCAGATACGTATCGTGGGTCAGGGTGACGTTTGCTTAAGCAATcattacagaatatttttttttctgtgatcatGGATTTTTGAAATACTTCACAAAAGCCTCAAACACTTCtgagtttctttttctctttaggATCCAAAATAGTCTCGCGTCAAATCCTTTCACACTGGCTTCCAGCCACAAGTGttggatttattattattattattattattattattattattattattgttgttgttgtcagtgaaacttaatgatttaaatatatgcaactATTTACAGAACTGgattttttaactttctttttctttttaaacgaTTTCAATACATTCATGATTTGgatcaaaataaacatattctgtcaaataaatattgagCAGAAAAGGCACAACAGTTTATATCTCGCTTTTTTCTAAAGGTTCTGCCATTTCTTTGCTTTTGTAGGGACTAAAAAATATTAgactctgaaataaaaataaccttttgtCCATGAGTCCAATCGTTCTCTAGCAGCTAGCGTCACGGCCATTCGACCCTTTTTAcgttatattaaaatgcacgCTCAGAAATCTCTCAtcgtttttaaatcattaaacgCTCAGTCTTTGAGCCTCAGGGGCTCCGTCAGCGTTTTAcgcttttgtgcatttttaaatcagatcAAACATATTTAACCATTTTCTTTCCTGCTGGACGTGGAGTaggttttgtttaatttgatagAATCTATGCTGTAATAACTGTCTGCTGTAGCTGAAGGTCTTAGTTCAGTAAGTGGTGTTctggttattttaataaatcatattaaatctGTCAATGGGTTAATTATTCATGTTTGTCCTGATTTGACTGTTCATGcatttcacaaaaaagaaattgttttcTGTGGAAGGATTCGGACAACTTTCAGTGTCTTTAACAGCTgtagtaaaattattatttttattatctgaaATGATACAagaattgtgtgtgtgattttataatgcgttttaatttgttttcgtTTAATAGTACAATTTGGTGCTTTATAAAAATCTATGCAATCTCTGTTTGGCTTTGTACATATActaatctttattatttaaaccatTGTGAAATCATAAATGAGCTCAAGAGgtcattttcatatatacataaccggttgatattaaataatgtataataaaatatttgttcaaaaacacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203205 lncRNA downstream 32366 10806521 ~ 10806780 (-) True G137588
TU203194 lncRNA downstream 52811 10785953 ~ 10786335 (-) True G137578
TU203189 lncRNA downstream 59740 10779130 ~ 10779406 (-) True G137573
TU203172 lncRNA downstream 84955 10753957 ~ 10754191 (-) True G137560
TU203171 lncRNA downstream 85888 10752847 ~ 10753258 (-) True G137559
XR_006247258.1 lncRNA upstream 64211 10934946 ~ 10937374 (-) True LOC122325152
XR_006247259.1 lncRNA upstream 64211 10934946 ~ 10937350 (-) False LOC122325152
XR_006247254.1 lncRNA upstream 243061 11113796 ~ 11114925 (-) True LOC122325111
TU203241 lncRNA upstream 243156 11113891 ~ 11114833 (-) False LOC122325111
TU203252 lncRNA upstream 320924 11191659 ~ 11194847 (-) True G137621
XM_043219277.1 mRNA downstream 139714 10649046 ~ 10699432 (-) True xkr6b
XM_043219280.1 mRNA downstream 190498 10638226 ~ 10648648 (-) False ccm2
XM_043219279.1 mRNA downstream 190499 10638226 ~ 10648647 (-) False ccm2
XM_043219278.1 mRNA downstream 190499 10638226 ~ 10648647 (-) True ccm2
XM_043219281.1 mRNA downstream 193853 10638226 ~ 10645293 (-) False ccm2
XM_043220173.1 mRNA upstream 1104 10871839 ~ 10888227 (-) False si:ch211-278j3.3
XM_043220171.1 mRNA upstream 1104 10871839 ~ 10888225 (-) True si:ch211-278j3.3
XM_043220172.1 mRNA upstream 1104 10871839 ~ 10887435 (-) False si:ch211-278j3.3
XM_043220174.1 mRNA upstream 1104 10871839 ~ 10884560 (-) False si:ch211-278j3.3
XM_043219462.1 mRNA upstream 25253 10895988 ~ 10922882 (-) False snx17
TU203048 other downstream 115077 10721921 ~ 10724069 (-) True G137469
TU203003 other downstream 268409 10567297 ~ 10570737 (-) True G137451
TU202840 other downstream 900269 9937965 ~ 9938877 (-) True G137330
XR_006247224.1 other downstream 1504085 9330137 ~ 9335061 (-) False pcsk9
XR_006247225.1 other downstream 1560181 9265372 ~ 9278965 (-) False bloc1s2
unassigned_transcript_2506 other upstream 61827 10932562 ~ 10932644 (-) True trnal-cag_34
TU203246 other upstream 261891 11132626 ~ 11136588 (-) False LOC122324412
TU203250 other upstream 304459 11175194 ~ 11182169 (-) False LOC122325476
XR_006247255.1 other upstream 496188 11366923 ~ 11368490 (-) False gsx2
XR_006247367.1 other upstream 758393 11629128 ~ 11629249 (-) True LOC122325628

Expression Profile