RNA id: XM_043220003.1



Basic Information


Item Value
RNA id XM_043220003.1
length 1047
RNA type mRNA
GC content 0.48
exon number 4
gene id mtif3
representative False

Chromosome Information


Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 27336495 ~ 27339099 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TGCGCCGAGAGTCAGATGGTCGGAGGAGTCACCTGCCTTAATGTTTGTGTTGTTAATTATTCTTTCTGACGACAAATTATGTGGTTATGACCCAGATTATTTGTCTTGAAACCCCTGACTGTTATCATTATCTTCGCGTGTGGCGTCGGTTCCGTTCGTCTCTAGTGATGCCTCTGGGTTTTCTGAGGTTTATTTTGAGACAGGCACTATGCCGCGCTCCTCTGCGACCCATCAGCCTGGTCACTTCACGCCTGCCAAAGAGTCCACCGACCCCGAGGCCTGCATATTCTTGCCACATCGTCTCGCCCTGGATAAGCGTGTCCTTCTCCACAGACACTAAGAGCGGGAACACCAGCGTGACAGATAACGTCCAAAAGGGAACTAAAAAGCTGGATCCGAGAGCACCAGTCACCTTTGGCAGCGTGGGTAGGAAGATCGGTCAGCGCCATATAAAGTTATTGGGTGAGGATGGAGAGGAATTGGGTACAATGCACCGTGCTGATGTCATACGACTGATGGACGAAAAAGGACTGAGGCTTGTTGCCATAAATGACCGCTGTGATCCTCCGTTGTACAGACTGATGAAAGGGAAACAGATCCACGAAGAGCAGATGAAACTTAGAAACACGGAGAAAGCCAAGAAAGGGCCTGTCCAATCAAAGGAGCTGACCTTTTCTTCCAGCATCACCCTTCATGACTTGGACACTAAATTGCGGCAGGTTGTCAACTGgctggaaaaaaacaaccacGTCAGACTCACTATCAAAGCAAGAACTGACGGTGGCACACCACTGGACAAAGTCTTGACACAAATGGTGGAGAGGATATCGGTGCCTGTTGGCTTTATTTCAAAACCTTCCGTGGTTCGTGGAGGTCGTGCTGCTATGTGTGTCCTTCAGCTGGCTTCGGTCAAAGAACTGCAGAAAAAAGGAGAGACTTCGAGCAAGAATTTAAAACCTGACTCGGAAACGGCAGCATCTCTTTGTAACTCTCCTACAGAGGAAACAAAAGACTTGAAGCAACAATAAAATTCTATGCAAATTTCAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU210583 lncRNA downstream 2779 27333297 ~ 27333716 (-) True G142529
TU210565 lncRNA downstream 37619 27215632 ~ 27298876 (-) True G142515
TU210571 lncRNA downstream 55054 27278920 ~ 27281441 (-) True G142521
TU210570 lncRNA downstream 60306 27275371 ~ 27276189 (-) True G142520
TU210502 lncRNA downstream 242799 27040225 ~ 27093696 (-) False G142464
TU210596 lncRNA upstream 36110 27375209 ~ 27377527 (-) True G142540
TU210652 lncRNA upstream 107377 27446476 ~ 27451221 (-) True G142586
TU210680 lncRNA upstream 115594 27454693 ~ 27454892 (-) True G142606
TU210660 lncRNA upstream 132685 27471784 ~ 27474801 (-) True G142590
TU210693 lncRNA upstream 136511 27475610 ~ 27476044 (-) True G142614
XM_043220349.1 mRNA downstream 79013 27230659 ~ 27257482 (-) True LOC122325335
XM_043220045.1 mRNA downstream 188450 27146476 ~ 27148045 (-) True LOC122325133
XM_043220055.1 mRNA downstream 387600 26947330 ~ 26948895 (-) True her7
XM_043219305.1 mRNA downstream 396211 26926233 ~ 26940284 (-) True ganaba
XM_043220347.1 mRNA downstream 762482 26569767 ~ 26574013 (-) True LOC122325332
XM_043219716.1 mRNA upstream 48191 27387290 ~ 27404395 (-) True zgc:152816
XM_043219717.1 mRNA upstream 48191 27387290 ~ 27401985 (-) False zgc:152816
XM_043218750.1 mRNA upstream 70403 27409502 ~ 27418420 (-) True zgc:175280
XM_043219811.1 mRNA upstream 137001 27476100 ~ 27478227 (-) True tex55
XM_043220385.1 mRNA upstream 234764 27573863 ~ 27577372 (-) True LOC122325363
TU210568 other downstream 80237 27229803 ~ 27256258 (-) False LOC122325335
TU210476 other downstream 411508 26922815 ~ 26924987 (-) True G142444
unassigned_transcript_2516 other downstream 721765 26614643 ~ 26614730 (-) True trnas-gcu_32
TU210168 other downstream 1102250 26232024 ~ 26234245 (-) True G142278
TU210175 other downstream 1148576 26185660 ~ 26187919 (-) True G142281

Expression Profile