RNA id: XM_043220048.1


Basic Information

Item Value
RNA id XM_043220048.1
length 2741
RNA type mRNA
GC content 0.39
exon number 5
gene id si:dkeyp-51f12.3
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 9339363 ~ 9355284 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACCTCCGCCCATAAACTCCCTCTTCACGTTTAAATGCCAGAGACTCAAACAGATTTACCGATACCGACGGCTGTGGGAAGAATCTGACTTTCCGTAAGGATTCTCTGAGGAAAAGACTGTCCGGGTCGGGATTTCCGCGGTAAAGAGCTCGCTGGAAATGATTCTCCTCGTTGAGTATAATGAAACAAGCGGCTCTCGACGGCTGTTCAGTTCAGATAGATGTGTTGAAGACAGTTCATCAGAAGAAACGCTTTCACTCGTCCATTGATGTTCAACTTCAGGATCAAAACAAACGCTCGTCGGACGGCGTCAACCCGACAAGGGTGCTCTCTGATCTGTGTGTTGGATCTGCGAGGATATGAACTGACGCCGGGGCCGGACTGTCCTTCTTGCTGCGCTCCGTGAGACACAACTTGAAGTGCATACTCAGACTATCATACACACATGTGTGGTGTTACGAGGGCAGAAAACAGTGTGTCTGCTAGTGATGGCGTAGCCAGAAGAAACAACATGTCCTGCCAGAACAGATGTCAGGTTTGGTTGGGGATCTTGCTTGTGATTGCAGGCCTAGTGCTCTTTATGACTGTGGATATATACATTGTGTTCATTAGCACGCCTATAGTGTGTCTGGGCCTTTTTCTGCTCATCCGTGCTTCATGCATGGTCATTAAATCCAGTCATGACGTAGCTGTGCCGGGTCACTTCCTTCTGCACCCCCGAACGGGCACCCGTTACACCCACCATCAAGCCATAGCGGTGCAAAGGAGGCTGGATCGCATCCGGAGGGCTACAGCAGAGGAGCACAGTCCGGTCCAAGTTCCTCCCATCTCAGACATCAGTCCACAGATCCCTCCTTCAACCCCTCCACCCTGGCAAATGGAGCCACCGCCGTCCTATTGTAACATGAGGCTGGATCGCGTCCGGAGGTCTACGGCAGAGGAGCACAGTCGGTCCAAGTTCCTCCCATCTCAGACATCAGTCCACAGATCCCTCCTTCAACCCCTCCACCCTGGCAAATGGAGCCACCGCCGTCCTACGAAACTGTTGTGAAGACCACTACAGCTGTAAACCAAGTATAAACACACCGGTTTGACTGTAGACACCGACACATTATGATTGAAAAGCTGATTTGTTCGAAGGTGCGCAGATATTAAAAATCTGTTACtatcacatttacacattaattattttggttttgtggcTCATAACTGATAAATGGCCATATTAAACTCTATTGTACTTAacataaatactttaaatgttaCAACTGAATGTAAGCCTTAAAACAGCGATGCGTTGAAAGATGGATATTTTTCATCCTTTACGATATGGAAGATGAATATTTATCCAGAACTGTCATTTTGAGATCTGCAACAAAAAAGTTGGTTGAAATGAAAGGACAAagtaacattttcatgcatgaacacacacacagctctgcaTGCACTCTGCAACAGATGATGCATTCATAGggttatatatttcttatataacCCTTCTTATctctatttttttaagttattgcAATGGTAGAGACAAactgaaaaagtaatctgaaaTTTAAAGGGAAGCGAATTCACAAGCatgtatgtaatatttcatgataaacggggaaaaaaagacagaaacttATCAAATGTGTATctaatctgttaaaaaaaatgctaaagtgCCTTAAGTGACAAGAAAAAtttgttttacagaattttgtaaaaacagaaGAGTGAAAAAAAGTCAGTATCTGTCTAAAGGGTTTTTCTCAAATCAGACGAAGggaatgaatattaatttgaagggaaaataaatgattaatttaaaaacgctattgttatttaatatcacacacacagtacCATTCCAGTTTTGGATCttcaaaaattacaaaaaatgagaaaattagaactgtttttttaataatgaataattataacaatttatttattaataataattcaattccacagtggtaaagctgaattttcagcagccattattcaaGCCTTCGgggtcacatgatctttcaaaaATCGTTCTAACAGGCTGACCTGGTGCtcaagaaaacatttctcattattatcactgttgaaaacagtcaagctgccaaatatttttgtgaaagccatcattaaatgcaaatgtgttttctgcttttaatgCGTTTAAAGTCCCTGCTAAAtgactttctttaaaaataaataaatgaaataataacattacCAAATCACTAACCCAAAACTTGAATGGTAGTGTTTATTACTGGCTTTTGTGGGACTCCAAACATGAAGTCAATCTGAACAAATATGAAAGTTAAAATGCTATGTTATGATTGTAAATGCCACTTATTACCTCTTTATTTATGAACTGAACCAAATATTGAATTGTGCCTTGCTTTCTACTCACTCACCTTTTTCCCTAATgaccaaaacatgtttttgagaAGGATTTAGacatttcttatatatatatatatatatatatatatacttttttttcccatattaATGGTAGGCCTACATATGGGATTGAACATGTGCCTCTCTCCAAACCGCCACTTACATTGTCACTTTAACAGGCCTACCAGAAACTATTATCTCTGTTCCGTGCGTGTGTTTTATTGACACTATATCACATGATGTGTTTTGTCAGCTATGTATCATTTTGTCAGTATATTAATATCACTATCACCTGTGCATATGAATACCAATACGCTGTATGAtacaaaaaactgtattttggtGACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202599 lncRNA downstream 10642 9325653 ~ 9328721 (-) False pcsk9
TU202579 lncRNA downstream 86393 9252712 ~ 9252970 (-) True G137132
XR_006247228.1 lncRNA downstream 98666 9222281 ~ 9240697 (-) True LOC122324791
TU202568 lncRNA downstream 103309 9222279 ~ 9236054 (-) False LOC122324791
TU202535 lncRNA downstream 214620 9118935 ~ 9124743 (-) True G137102
TU202720 lncRNA upstream 37666 9392950 ~ 9393229 (-) True G137250
TU202723 lncRNA upstream 45098 9400382 ~ 9401209 (-) True G137253
TU202725 lncRNA upstream 48846 9404130 ~ 9404541 (-) True G137255
TU202738 lncRNA upstream 84953 9440237 ~ 9447911 (-) True G137264
TU202737 lncRNA upstream 89298 9444582 ~ 9447911 (-) False G137264
XM_043220049.1 mRNA downstream 143 9335931 ~ 9339220 (-) True bsnd
XM_043219466.1 mRNA downstream 4304 9328641 ~ 9335059 (-) True pcsk9
XM_043219471.1 mRNA downstream 55980 9273160 ~ 9283383 (-) False bloc1s2
XM_043219470.1 mRNA downstream 59654 9273160 ~ 9279709 (-) False bloc1s2
XM_043219468.1 mRNA downstream 60398 9272060 ~ 9278965 (-) False bloc1s2
XM_043220382.1 mRNA upstream 2124 9357408 ~ 9359541 (-) True si:dkeyp-51f12.2
XM_043220109.1 mRNA upstream 21765 9377049 ~ 9381993 (-) True ftr85
XM_043220125.1 mRNA upstream 108450 9463734 ~ 9477418 (-) True igfbp3
XM_043220088.1 mRNA upstream 154382 9509666 ~ 9545061 (-) False si:ch211-191a24.3
XM_043220089.1 mRNA upstream 154382 9509666 ~ 9545039 (-) False si:ch211-191a24.3
XR_006247224.1 other downstream 4302 9330137 ~ 9335061 (-) False pcsk9
XR_006247226.1 other downstream 60398 9255548 ~ 9278965 (-) False bloc1s2
XR_006247225.1 other downstream 60398 9265372 ~ 9278965 (-) False bloc1s2
XR_006247227.1 other downstream 60398 9265372 ~ 9278965 (-) True bloc1s2
TU202481 other downstream 517644 8821154 ~ 8821719 (-) True G137056
TU202840 other upstream 582681 9937965 ~ 9938877 (-) True G137330
TU203003 other upstream 1212013 10567297 ~ 10570737 (-) True G137451
TU203048 other upstream 1366637 10721921 ~ 10724069 (-) True G137469
unassigned_transcript_2506 other upstream 1577278 10932562 ~ 10932644 (-) True trnal-cag_34
TU203246 other upstream 1777342 11132626 ~ 11136588 (-) False LOC122324412

Expression Profile