RNA id: XM_043220050.1


Basic Information

Item Value
RNA id XM_043220050.1
length 3074
RNA type mRNA
GC content 0.45
exon number 17
gene id gnpat2
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 21630270 ~ 21639546 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGCGCTTGGGTCCGAGGTTTGACCAGTTCTCTGGACTCTGACGTCACATCAGAAGAGGAGAGGAACACCTGCTGCTCTCGTATGGGACATGGAGCCACTGAGTTTGGACGGTGCAGAAGCTGATGGCTTCTTTGACATCCTGGAGGAGAGGAGGCGGAGCAGTGACTTAAGCCACGCCTTCCGGACCTTTAACCCGCAGCCGTACCGTGGGGCCACGCCCATTTCAGCAGCCGCTCTCAACAGGATGGTGCTTGAATCGCAATACCTGACCTACATCGTACAAGAGATTATGGTTGAATGTGACGAACCACGGGAGGCGCTTTTAGAGGAGGCGTCTTCGCTGCTGGACGAGATGAGTCAAAACCTTCAGCTGGGATTCATTCGTCTGCTGGGCTTCGCACTGAGCAAAGTTTTCAAGAGCGTTTTCAGCTCCATACGCGTCAACGAGGATGGACTCACCCGGCTCCAGCAAGCCATTCAGGAGTATCCCGTCATCCTGATGCCCAACCACAGGAGTTATGTGGACTTCCTTGTTCTGTCTTACATCATGTTCACTTATGACCTCTCTATCCCCGTCATTGCAGCTGGAATTCCTCTGATGGGGATGAAGCTGATTGGTGAGATCTTTCGGCGATCAGGAGCGTTTTTTATCCGTCGTGCCATTGGCTCAGACAAGCTGTACTGGGCAGTGCTGTCTGAGTACGTCAGAACCATTGTGCGGACAGGTTATGCTCCGTTGGAGTTTTACGTTGAAGGATTACGCAGCAGAACGCTGAAATCTCTCACACCAAAACTAGGAATGATGCACATGGTGTTGGAGCCCTTTTTTAAAGGAGAGGTGTTTGACATCAGTCTGGTGCCCATCAGCATCAGCTACGAGCGTGTGCTTGAGGAGTCGCTCCTCGCTCATGAGCTGCTGGGAGTGCCTAAACCCAAAGAGACCACAGGGGCTTTGCTGAAGGCCAGGACTGTGCTGAAGGAGGACTACGGCTGCATGCATGTGTGCTTTGGCAACCCTGTGTCAGTCAGAGAGCTGATGAAGGGAAAAATTAACCGCAAACAATATAATCTGGTACCCAGaGACCTGCCTATGAAGCCCAGTAAAGAGACGCAGGAGTTTGTGTCTGGTCTCGCCCACATGATGATCCGTTTGCAGGAGAGAAATGCGGTACTGAGTGCCTGGAACCTGATGGCTGTGGTTCTCCTTCAGAACCTTCAGGGCATTGATTTAGACCTGCTGACCCACAAAACCCTGTGGCTGAAGAAACTCGCCCTGCGGTTCGGAGCTCATCTCAGATGGCCCAAGAATGATTTGGATTCTGAGGTAATGTCATCTAGCATGAGCCTGCATCATTCAGTGGCACGCTGTGAGGGGCGTGTCTATTTGGTGGAGGAGGTGGGGCCAGGGCCTGTCACTCAAGAGGAGGACGTGTTCCGAAAGGCTGCATCTGTGCTCATGTGTGCCTCCTACAGGAATCAAGCAGTGCACGTATTCACTAGACCAGCTATGGTGGCAGTCGCTATGACAACAGATGCAAGAAATAAAACAGACAAtgtctttcattattttaagtTCCTGCTGGAGCTCTTTTCCAATGAGTTTGTTCTCATTCCTGGTCAAGCAGTTCAGgaCTTTGAGGAGGGCTGTTCTTTGCTACAGCAGTCTGGTGTAATCGGCCGCTCTGATGAAGAGATCTGTGTGAGGGACAATGAAACCATCATCTTCCTCAGAGCGATTCTGCAGTCTTTCATCGAAAGCTACCAGGTGGTGTTCAGGTACCTGTGTGAAGAGAGCTCCCAGACATTCAGGGAGAAGATGTTTTCAAACAGCATCCGCAGCTTCATCGTCAAACTCTTTATTTCAGGCGAAGTCGAGTCGCACGAGTGTTTATCGTCCGACCTCCAGAAGAACGTTCTCTCAGCTTTGCTCCGGATGGCTGCTGTGACCAAAACTAAAGTtgatgACCAGAATGAGTTTACGGTGAATAAATCTGCGGTGAAGAAAATATGGCACATGCTGAGCAACGGACGGACCTCTGAGATCAGTGTAAACGCCAGACTGTGACGAGAAGAATCAGACGACAACGACTCTCAATTCCTTTATTGATAATGTTAATATGTATaagtactgtatgtgtttttagtGTCAAACACAGAACAAACCTGCAGTAGTTGCTCTAGATGTAGGACGTAATTTGCAACCGTTATTGCAAGTAGGctatatatgatttaattttatagaTCATGTAAGAATCATACAGATATTAATCAAGATACGAAGATGTGCTCGTCTTTTGAGTATTGatgtaaaaattaatgtttaatgtgtcGTTTAACAGGTGTTTCAACTGTTTTATGAAATCGTTttctaatttttcaaaacatacaaTGATATACTGTAATAAACTATTGATTACTGCTGTATATAAAGAAACATGAAATAATAGTATTACAAGACGAGAACAGAAAGCCATCAgccataaatattataaatatgctaAGAAGTTAAGTGTGTCTTAACAAAAGAGAGATGCTTATAGTTCTggtccttgattctgattggttgaggcAACTTCAAAGCtatctacaaacacacaccttaGTTTTCAATTGTCTACGTAGTTTAGagcaaaaatttgtttttattaatataattacacattattattatttttttgtaagatcttgctgcatatataaaatagccatcttaataaagcaataagcccCGAAGCGGTggtttacagtaaattaataaCAGCTACAGTTACTACTACTTCTTGGggcttatttctttatttaccaCCACATTAAAAACGAACCAGCAGAGCACTTTTTGTGTACTTGTCTTAAAGTGGAGTTTCAGAAAGCGTGTGGCCTAATTCACAAGCAAGCAGCTGGTTAGCAAAACCGtccacttttctttttccagttaTTTGACCGGTCCAGATTGTTTTAAAAGGATTGATTCTGATCTTCTCAAGTTCAACTCGTTTGTGCGCGAGTCGTGCAAAGCTCTTATGGCTTTGTTTCCTTTCAGAAATCGTCGATATCAatgcataaatgctgtttt

Function

GO: NA

KEGG:

id description
K00649 GNPAT; glyceronephosphate O-acyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207906 lncRNA downstream 61910 21567633 ~ 21568360 (-) True G140826
TU207896 lncRNA downstream 78039 21549084 ~ 21552231 (-) True G140817
XR_006247240.1 lncRNA downstream 117787 21507244 ~ 21512483 (-) True LOC122324936
TU207879 lncRNA downstream 124628 21497304 ~ 21505642 (-) False lin28b
TU207882 lncRNA downstream 146970 21482618 ~ 21483300 (-) True G140808
TU207881 lncRNA upstream 58874 21698420 ~ 21699275 (-) True G140807
TU207947 lncRNA upstream 88107 21727653 ~ 21768597 (-) False G140859
TU207948 lncRNA upstream 88107 21727653 ~ 21768597 (-) False G140859
TU207946 lncRNA upstream 127403 21766949 ~ 21768597 (-) True G140859
TU207872 lncRNA upstream 131484 21771030 ~ 21774369 (-) True G140801
XM_043219388.1 mRNA downstream 99824 21516779 ~ 21530446 (-) True rab10
XM_043219715.1 mRNA downstream 124615 21483592 ~ 21505655 (-) False lin28b
XM_043219714.1 mRNA downstream 124710 21483592 ~ 21505560 (-) True lin28b
XM_043219127.1 mRNA downstream 314943 21305710 ~ 21315327 (-) True hadhaa
XM_043220543.1 mRNA downstream 356032 21265415 ~ 21274238 (-) True prdm1c
XM_043220238.1 mRNA upstream 783 21640329 ~ 21655564 (-) False lpin1b
XM_043220239.1 mRNA upstream 783 21640329 ~ 21654016 (-) True lpin1b
XM_043220185.1 mRNA upstream 50872 21690418 ~ 21697694 (-) True fez2b
XM_043220184.1 mRNA upstream 50872 21690418 ~ 21697693 (-) False fez2b
XM_043219767.1 mRNA upstream 59860 21699406 ~ 21713062 (-) True wdr26b
TU207887 other downstream 117917 21509629 ~ 21512353 (-) False LOC122324936
TU207613 other downstream 351529 21198710 ~ 21278741 (-) True G140616
TU207486 other downstream 654520 20973404 ~ 20975750 (-) False crnkl1
TU207179 other downstream 1567293 20061602 ~ 20062977 (-) True G140277
TU207100 other downstream 1571771 20057624 ~ 20058499 (-) False G140227
TU207950 other upstream 93000 21732546 ~ 21741004 (-) False batf
TU207987 other upstream 201567 21841113 ~ 21841468 (-) True G140883
TU207994 other upstream 206260 21845806 ~ 21846917 (-) False LOC122325102
TU208103 other upstream 473056 22112602 ~ 22113044 (-) True G140972
unassigned_transcript_2511 other upstream 475492 22115038 ~ 22115120 (-) True trnal-uaa_36

Expression Profile