RNA id: XM_043220055.1


Basic Information

Item Value
RNA id XM_043220055.1
length 1335
RNA type mRNA
GC content 0.45
exon number 3
gene id her7
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 26947330 ~ 26948895 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGATTAAAACATATGAGCTCACATCTAATGACCTACTAAAAGCCTGTGCCCTAGATCTTTTTGGTATTTCGTTATTAGGTTTTTAGCCGGGAACAAGCGGCATTAGAGCGCTGCGCCTCTCTGATTGGTCTGTGTCGGAGAGTGGGCGTGGCCGTTCCACCACGCGCCGAACGCCTATAAATACGTGCGCTCAGCTTCAGCCCGGCATCTCACGCTCGTCTGCTCGCCTCGAAGAGATTGCTTTTCCAGCGTACCTAATAGAAGATAACTTGGAGCTTTAAAGGATTATATCAACTCTGATATAAACTGCTGTTTGGAGTACACGTGCGATGAAAATCCTCAGAGAGGCCGAGACCATCAAAATGGACAGAAAGCTTTTAAAACCTCAGgtagaaagaagaagaagagaaaggatGAATCAAAGTCTGGAGAACCTGAGAATGCTGCTTCTGCAAGGCCCTGAGCACAATAGTCCCACGCAAAGGAGAATAGAGAAAGCCGAGATCTTGGAATACACCGTCCTGTTTTTGCAAAACTCCGCTGCTCAGGCCAAGAAAGCAAAAGACGCGGAAGGAGGAGAAAAGAGTCGGTTTATGGATGGCTTTTCATCTTGTCTTCAGAAAGCAACCCGCTTCTTGTCAGATGAAGGTAAGGCCCGTGGACAGGAAGGTTCGGTGAACGCCGTGCTGTGTCAGCGTCTGTCCCAGCCCTGCGCGTCGACCACCGTCCGACTGCCTGCCAGAATCCAGAACTCGTCCAGAAAGCAGCTTCCAGACTCAAACGGGCGGCATCATCTGCAGCAGAGCTCCGTCTGCAAACAAGGACTTCCTACGGCTTGCAGGAACGTTGTGCCACATCTGAACAGGGTTCCATTCAGAAGCTCAGATTCCAACGCGCTGCATTCGACGGCCCCACCAACCTCTCAACACCAGACGGTCGGCCAGACGGTCTGGAGGCCTTGGCCTTGAGAGACATTTAAGACATTGGCAGAGAAATGGACTCGAAACACTGGGCTTGTGTAATCATTAAACATGGTTCATCTCTTTTAAATTATAGGCTTCAGAGagacatgtttaattaaaaaaaatcatctgacATCACGttggaaatgtaaaatgtgtaaatagtgTATGATaaattatgcaatatatttttacacagattttttttctttttttttgttgttgcatgaTCTGTACTGAGTGTATGATCATTTGTAATACATAGCTGATGtatgtatttatctattttgcacatttatttattcacgaCATTCCCTTTTTATAGTTGCATACTTGGGGGGATAAAACATACATTCCgtcattaaaatttaaa

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0001757 somite specification biological_process
GO:0005488 binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210468 lncRNA downstream 33049 26913969 ~ 26914281 (-) True G142440
TU210467 lncRNA downstream 33472 26912869 ~ 26913858 (-) True G142439
TU210466 lncRNA downstream 37949 26909126 ~ 26909381 (-) True G142438
XR_006247290.1 lncRNA downstream 189127 26757053 ~ 26758203 (-) True LOC122325367
TU210502 lncRNA upstream 91330 27040225 ~ 27093696 (-) False G142464
TU210500 lncRNA upstream 140317 27089212 ~ 27093696 (-) True G142464
TU210565 lncRNA upstream 266737 27215632 ~ 27298876 (-) True G142515
TU210570 lncRNA upstream 326476 27275371 ~ 27276189 (-) True G142520
TU210571 lncRNA upstream 330025 27278920 ~ 27281441 (-) True G142521
XM_043219305.1 mRNA downstream 7046 26926233 ~ 26940284 (-) True ganaba
XM_043220347.1 mRNA downstream 373317 26569767 ~ 26574013 (-) True LOC122325332
XM_043218675.1 mRNA downstream 386943 26558946 ~ 26560387 (-) False rps29
XM_043220473.1 mRNA downstream 507408 26325231 ~ 26439922 (-) False LOC122325425
XM_043220045.1 mRNA upstream 197581 27146476 ~ 27148045 (-) True LOC122325133
XM_043220349.1 mRNA upstream 281764 27230659 ~ 27257482 (-) True LOC122325335
XM_043220003.1 mRNA upstream 387600 27336495 ~ 27339099 (-) False mtif3
XM_043220005.1 mRNA upstream 387600 27336495 ~ 27339087 (-) True mtif3
XM_043220004.1 mRNA upstream 387600 27336495 ~ 27339082 (-) False mtif3
TU210476 other downstream 22343 26922815 ~ 26924987 (-) True G142444
unassigned_transcript_2516 other downstream 332600 26614643 ~ 26614730 (-) True trnas-gcu_32
TU210168 other downstream 713085 26232024 ~ 26234245 (-) True G142278
TU210175 other downstream 759411 26185660 ~ 26187919 (-) True G142281
XR_006247173.1 other downstream 850359 26088415 ~ 26096971 (-) True pgfa
TU210568 other upstream 280908 27229803 ~ 27256258 (-) False LOC122325335

Expression Profile