RNA id: XM_043220056.1


Basic Information

Item Value
RNA id XM_043220056.1
length 1084
RNA type mRNA
GC content 0.56
exon number 6
gene id LOC122325143
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 7255499 ~ 7257574 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCCGCACACTTCACTTCAGACCGCGCTACTGCGAGCGTCGCGATGGATGTACACAGAGCTGGCTCGGTCGACTTTCGGGATTGTAATATGGATGAAACGGATATGAAAAACAGGAAGGTGCAACACCAGGAGGAACGCGTCGACAGCGGCGTGGATTCGCTGAAGGAGGACGAGTATATGAAAATTGTGGAGGAAATTGAGACTTTGCTTCTTGGAGACCGGATTGCGATTCCGAAGGGGACGTGCGAGTCTTGGACGCAAGAAGTCACCGAGGATGGAGACACGTATCTTCACCTTGCCATCATTCACAAGGCGGACGACTATGCCATCCAGATTATCAAACAGTGTCAGAACGACCCGTTCCTGAACAGACAGAACAACCAGAGACAGACTGCCCTGCATCTCGCCGTCATCACGGATCAGCCACACATGGTGGACAGACTGCTCAAGGCCGGCTGCGATCCACGGCTGGTGGACCAGAGCGGGAACACGGCCCTCCACATCGCCTGCAAAAGAGGCTCGCAGGCTTGCTTCTCGGTGCTGACTCAAATTCAGACCCAGCATCTACACTCCATTCTCAGCTTCCCGAACTACAGCGGACACATGTGTCTCCACATAGCGGCCATTAACAACTACCTCTCAATGGTGGAGAGTCTGGTCCAGCTTGGGGCGGATGTAAACGCAAAGGAGCAGTGTAGCGGCCGTACGTCACTCCACTTGGCCGTGGACCTGCAGAACCTGGATCTGGTGCACGTGCTCATCACTTTGGGAGCGGATGTCAATAGTCTAACCTACGGCGGGTACACGCCGTACCACCTGACCTTCGGCCGCCAGAACAGCGAGATCCAGAGGCAGCTTTACACCCGGACGGCTCAGGAGCTCAGAGCGATGCCGGAGAGCGAGTCAGAGGACAGCGATGAGGACTGGATGTCCGATGAAGAATGTATCTATGACGATATCCAGTTCTGTGGGAGATAGTCGGGCCCTCGGGACAACATTCCCTGTGATGCAATGCAGCGAAGGCCGTAGGTGCTGTCTCTAGGTCTGGGACGGGGTCCGCCTTATCCCAGGACGTCAATCCTC

Function

GO:

id name namespace
GO:0009615 response to virus biological_process

KEGG:

id description
K04734 NFKBIA; NF-kappa-B inhibitor alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201914 lncRNA downstream 3627 7152468 ~ 7251872 (-) True G136696
TU201911 lncRNA downstream 103745 7151390 ~ 7151754 (-) True G136694
XR_006247164.1 lncRNA downstream 116724 7135774 ~ 7138775 (-) False LOC122324389
TU201950 lncRNA upstream 23798 7281372 ~ 7281804 (-) True G136716
TU201952 lncRNA upstream 103293 7360867 ~ 7396292 (-) False G136717
TU201951 lncRNA upstream 136452 7394026 ~ 7396292 (-) True G136717
TU201970 lncRNA upstream 228319 7485893 ~ 7487411 (-) True G136724
TU201983 lncRNA upstream 286782 7544356 ~ 7598714 (-) False LOC122324530
XM_043220588.1 mRNA downstream 29517 7222636 ~ 7225982 (-) True LOC122325548
XM_043220587.1 mRNA downstream 29518 7223153 ~ 7225981 (-) False LOC122325548
XM_043219826.1 mRNA downstream 96880 7156267 ~ 7158619 (-) True LOC122325011
XM_043220372.1 mRNA downstream 130816 7121351 ~ 7124683 (-) False LOC122325354
XM_043220371.1 mRNA downstream 130816 7121351 ~ 7124683 (-) True LOC122325354
XM_043219601.1 mRNA upstream 51136 7308710 ~ 7313322 (-) True LOC122324872
XM_043219603.1 mRNA upstream 64082 7321656 ~ 7325677 (-) True LOC122324873
XM_043219604.1 mRNA upstream 77814 7335388 ~ 7340455 (-) True LOC122324874
XM_043219546.1 mRNA upstream 110737 7368311 ~ 7370195 (-) True nfkbiaa
XM_043220585.1 mRNA upstream 167262 7424836 ~ 7429282 (-) True LOC122325546
TU201897 other downstream 26536 7125748 ~ 7228963 (-) True G136688
TU201662 other downstream 804000 6432830 ~ 6451499 (-) False LOC122324366
TU201658 other downstream 841486 6412479 ~ 6414013 (-) False si:dkey-63b1.1
TU201577 other downstream 952523 6274754 ~ 6302976 (-) True G136460
XR_006247217.1 other downstream 1324377 5924475 ~ 5931122 (-) False zpax2
TU201939 other upstream 39287 7296861 ~ 7305724 (-) True G136707
TU201958 other upstream 78577 7336151 ~ 7340436 (-) False LOC122324874
TU201961 other upstream 78577 7336151 ~ 7339939 (-) False LOC122324874
TU201941 other upstream 169095 7426669 ~ 7429268 (-) False LOC122325546
TU201966 other upstream 175658 7433232 ~ 7436354 (-) False LOC122325222

Expression Profile