RNA id: XM_043220059.1


Basic Information

Item Value
RNA id XM_043220059.1
length 3500
RNA type mRNA
GC content 0.44
exon number 20
gene id kifap3a
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 17843539 ~ 17861031 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTCAGTACACACCCATAGCAACACAAACAGCAGCATCCTGCCAGAGTAGAAACGATGAAGCAGTCCAGATATTAGATACACGTCAAAACATCAGACGGAAATCAACCTCACAGGTTTATATGCGTTAATTTACGAACAACGATGCAAGGGGACGACGCCAGATATTTAAAGCGGAAATATAAGGGTGGCAGTTTAGATGTCCACCCCACAGAAAAAGCCCTTGTTGTCCAATATGAAGTGGAAGCTACAATCCTGGGAGAGATGGGAGACCCCATGCTAGGAGAACGCAAGGAGTGCCAGAAGATAATCCGTCTGAAAAGCCTGAATTCCAACACGGACATTTCGTCTTTAGCACGGAAGGTAGTGGAGGAGTGTAGACTCATTTCCCCTTCCAGACTTCCTGAGGTGGAACAGTTATTGTTTTATCTGCAGAACCGCAAGAAATCTGCTGaaaagaaagagaagaaacagATCAAGCCAAGAGACCTGACTCCTTTTGAAGGCATGGAgCTTGATGAGGAGGCCAACATTAATAGCATAGATGACTATGTTGAGCTTCTGTATGAGGACATCCCTGAGAAGATCAGAGGAGCTACACTCATCCTCCATTTGGCCCGTAACCCTGACAACCTGGAGGAGTTGCTGCAGAATGAGACTGCTCTGGGCGCGCTGGCCCGGGTCCTGAGAGAAGACTGGAAGCAGAGTGTCGATTTGGCAACCACAATCATCTATGTCTTCTTCTGCTTCTCCAGCTTCTCTCAGTTTCATGGCCTGATCACTCACTACAAGATCGGTGCGCTGTGTATGAGCATAATTGAGCATGAGCTGAAGCGCTATGACCTATGGCAGGACGAATTGCTGAAGAAAAAGAAGGCTGGGGACGATGACCCAGACAATCAGAACCTGAAGAAGGAGTACGAGAAAGCCCTTAAGAAGTACCATGGGCTGCTGACCAAACAGGAACAGCTTCTGAGAGTTGCTCTGTACCTGCTGCTGAATCTGTCTGAGGACACTCGCACAGAGCTGAAGATGAGGAACAAGAACATTGTCCACCTTCTGGTGAAAACGCTGGACAGAGACAGCGAGGAGCTACTGGTGCTGGTAGTGTCCTTCCTCAAGAAACTTAGTATCTTCTTAGAAAATAAGAATGACATGGCTGAGATAGATACAGTGGAGAAACTGGCGAAACTGGTGCCCTGTGAACATGAAGATCTCCTTAATGTAACTCTTCGCCTCCTCCTTAATCTCTCCTTTGACACCGGCCTCCGCAGCAAGATGGTGcaggcagaccttctgcccaaACTCACCTCACTGCTAGgagaCGAAGCGCAGAGACAGATCGCAATGTGCATTCTGTACCACATCAGTATGGACGACCGTTTCAAGTCTATGTTTGCCTACACAGATTGCATTCCACAGgtaatgaaaatgttgtttgatTGTGGTGAGGAGAGGATTGACGCTGAGCTCATTTCTTTCTGCATCAACTTGGCTGCCAACAAGAGGAATGCCCAGATCATGTGTGAAGGCAATGGTCTGAAAATGCTGATGAAGAGAGCGCTGAAGCTTAAAGATCCtctgatgatgaagatgatccGAAATGTATCTCAGCATGATGGACCTTCTAAAAATCTCTTCATTGATTATGTTGGTGACTTGGCGGCTCAGATCGGACTGAAGGAAGAGGAGGAGTTTGTGATTGAGTGCTTGGGAACTCTTTCCAATCTTACCATTCCTGATCTTGACTGGGAACTTGTGCTAAAGGAGTACAACCTGGTGCCTTATCTCAAGGACCACCTCAAACCAGGCTCTGCAGAAGATGACCTCATTCTGGAGGTGGTGATCATGATTGGCACTGTCTCCATGGACGACTCATGTGCTGTAATGTTGGCTAAATCAGGCATCATCCCTGCTCTAATAGAGCTGCTGAATGCCCAGCAAGAAGACGATGAGTTTGTCTGTCAGATTGTGTACGTATTTTACCAGATGGTGTTTCACCAGGCCACCCGAGATGTCATCATAAAAGAAACACAGGCTCCTGCATATTTGATTGACCTGATGCatgataaaaatgcagaaatacgCAAAGTGTGCGACAATACATTGGACATCATTGCTGAATATGATGTGGAGTGGGGCAAGAAGATCCAGAGTGAGAAGTTCCGCTGGCATAACTCTCAGTGGCTGGAGATGGTGGAGAACCGGCAGATGGATGAAGCAGAGCCTTTCATGTATGGAGATGATGGAGAACCTTTTCTCCAAAACGGTGACATCCTGGAACGGCCAGACCTCTTCTACAGTGCAGatggAATAATCCCAGCAGATGGTGCCATCAGTCCAGAGTTCTTCACAGACTTCCAGAACGGAGACCTGTTAGTACCACAGGGTTTCCCCAGCagTTCTTTGACAGACGGCTACGGACAGACCGCTGTGTCTCCAGCACGTCCTGCCACGGCTTACGGCTTTCGGCCTGACGAGCAGTTTTATTATGGTTACACGGCCTCACGGTAGGAGAGTGTCAGGAAAGACCTAAAGCCTATTAAAAACCAATTAAATGGTTCTCAAAAGATGCTAGTTAGGTCTCTTCACCATTTCGAATGAAAGCTACACTACTGGTTTTTTTCATCATCAGTATTTCTTTCTATGTAATATGTGCGTATTTATTACATTCCGTGTGAATCTCAGTCTGAATGTGTTTTAAGATGAATGTTCGCAATGAAGCTATAATCTGCAGCCCTCACTCTTGAGCTCCATCATGTAGTTTGATCATATCTACTTTAGCCTACTGTGTATTGCTTGTCAACACCGAAGAAACTAATGGCACAACATTGCCTTTATTGTGCAATATAATGAAAGTAGGAGGTTAGTTGCATGCTGTTTCAGTGATGTAGGTGAGTTAAGTTACGTTGAAAACatctatttatacattaaagCAAATCCGTTTAATGCATGACAGTTGTTTAGGTTTCTGGAAGCAAAATATTGTGTAGCTTTAGCTGCAACTCATGTACTTATAGTTGATAATCAGTCATTGTCATCCATAAAAGGATTTCCTTCAGTTTTACATATGTTTACATAAAGCAACTGATCTGGTCAGTTTAATGACTCACATGAAGtaacatattttgttaaaatccaTTTCATACATGACAACACAGCACAGTACACATGGTAACAAAAATACCACTTTACAGTCTTAACATCCACTCACTAATGTGATTGTGCAAAACATTGTGGCCTGTTTCTTTGCTTTTGATACCGTAGTACCAGTTTTATGACGCTTCTTGGCTTGGTGCACTGCTAACGGCTTcatatgtattttgtaatgtaGCCAAACAAAGTGTTCTTTTGAAATAATACTGGTCTCTTTATGTGCGTTTTAGTATTTATGAAACTCAATTTCATTGGTGCCTGGGACTTGTCttaattactgttttatataaaatgcctttttatttaatgtggtgcaatatgaaatacataaattgATGTGAAAAAGC

Function

GO:

id name namespace
GO:0005871 kinesin complex cellular_component
GO:0019894 kinesin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206130 lncRNA downstream 41343 17801402 ~ 17802196 (-) False swt1
TU206136 lncRNA downstream 43673 17795484 ~ 17799866 (-) False G139567
TU206183 lncRNA upstream 27537 17888568 ~ 18180187 (-) False G139590
XR_006247178.1 lncRNA upstream 32705 17893736 ~ 17907615 (-) True LOC122324448
TU206190 lncRNA upstream 32971 17894002 ~ 17898622 (-) False LOC122324448
TU206185 lncRNA upstream 226181 18087212 ~ 18107403 (-) True G139591
TU206184 lncRNA upstream 246513 18107544 ~ 18180187 (-) True G139590
XM_043219503.1 mRNA downstream 19338 17806129 ~ 17824201 (-) False swt1
XM_043219504.1 mRNA downstream 19338 17808201 ~ 17824201 (-) False swt1
XM_043219502.1 mRNA downstream 19339 17801666 ~ 17824200 (-) False swt1
XM_043219501.1 mRNA downstream 19339 17801666 ~ 17824200 (-) False swt1
XM_043219500.1 mRNA downstream 19339 17801666 ~ 17824200 (-) True swt1
XM_043218850.1 mRNA upstream 106065 17967096 ~ 17975299 (-) True slc25a24
XM_043220232.1 mRNA upstream 128281 17989312 ~ 17995262 (-) True si:ch211-63o20.7
XM_043220602.1 mRNA upstream 146915 18007946 ~ 18013527 (-) False znf395b
XM_043220604.1 mRNA upstream 146915 18007946 ~ 18013451 (-) False znf395b
XM_043220603.1 mRNA upstream 146915 18007946 ~ 18012436 (-) True znf395b
XR_006247229.1 other downstream 19338 17810274 ~ 17824201 (-) False swt1
TU205714 other downstream 415468 17346806 ~ 17428071 (-) True erh
TU205713 other downstream 415468 17425868 ~ 17428071 (-) False erh
TU205287 other downstream 1381323 16455468 ~ 16462216 (-) True G139030
TU205233 other downstream 1476767 16364810 ~ 16366772 (-) False fndc1
XR_006247304.1 other upstream 482441 18343472 ~ 18350122 (-) True adgrf3b
TU206351 other upstream 544996 18406027 ~ 18446949 (-) False G139706
TU206365 other upstream 545723 18406754 ~ 18442292 (-) True G139706
unassigned_transcript_2507 other upstream 1215015 19076046 ~ 19076118 (-) True trnaf-gaa_119
TU206720 other upstream 1393779 19254810 ~ 19256255 (-) False batf3

Expression Profile