RNA id: XM_043220104.1


Basic Information

Item Value
RNA id XM_043220104.1
length 2509
RNA type mRNA
GC content 0.44
exon number 21
gene id mep1ba
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 9555458 ~ 9575674 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCACATATTCTGCAGATGCTCTGTATGATTGTCTGACCTTCTTGCAAGAATAAACCCCGCATTTTATTGCCTCACAATAAGAGTTGGAAACATTTTTCCAtaacaaggAGACCGGAGTGAAGTTCTCATGGCGTCTCTCCATATATTGCTGACTCTGTGTGTATGCGCCACAGCTCTGTGTTTGccaAGATCTTCACTCACAGAGGTTGATGAGGACGATGGAAAAGACCaggatatttttgatataaatgaaGCGGCAGGACTTGATCTGGAGGAAGGAGACATTCTGGTGAATGAGCCAACATCTTTACTCACAGACAATACAGATGTTGATGAGGATGATGGAAAAGACCAGGATATATTTGATATCAATGAAGCGGCAGGACTTGACCTGGAGGAAGGAGACATTCTGATAGAGGAGCCAACATCTTCACTCACAGGCGATACAGATATTGAGGAGGATGATGGAAAAGACCAggatatatttgatataaatcaAGCGGCAGGACTTGACCTGGTGGAAGGAGACATTCTGATGAATGAGgGTGAAGACAGAAACACTATTTTGGGTGAAAAGTATCGCTGGCCGACGACTGTACCGTACGTCCTAGACAGCAGCCTCGacaTCAATGCCAAAGGTGTGATACTAAAAGCGTTCGAGCAATTCAGACTCAAGACCTGTATTGACTTCAAACCCTGGAGTAGAGAGACAaactacatttttgtatttaaaggcAAGGGATGTTACTCAAAGGTAGGAAATCGACACATGGGGAAGCAAGAGTTATCAATTGGTACAAACTGTGACAGTTTAGCAACAGTGGAGCATGAGTTTCTGCATGCGCTGGGATTCTGGCATGAGCAGTCCAGATCTGACCGAGACGACTACGTTACCATTGTGTGGGATCAGATTCAAGAGGTTCATAAGAGCAACTTTAAATTACATATTGAAAGGGAGTCAAGCTCTCTTGGCGTGCCTTATGATTACGGTTCAGTCCTGCACTATGGTAAAACATACTTCAGCAAAGGCAGTAAGCCAACCATTGTTACCAAAATACCAGAATTCATGGATGTGATTGGTCAACGCTTGGAGTTCAGTGACAGTGACCTGCTCAAGCTGAACCGGCTATACAAGTGTACTACATCCTCAACTTTTCTGGACTCTTGCCAGTTTGAGCAGCCAAATATCTGTGGTATGATCCAGGGTAATGGTGGAAATGCCAAGTGGGCTCGTGTAAAAAGAGTAAGGGGCGGTCCAAAGAGTGACTACACCAATCTGGGTCAATGTCAAGGGGTTGGGTTCTTCATGCATTTCAGCACAGCCACAGGAAGCAAGGGTAACAAGGCTTACCTGGAAAGTCGTCTCTTTTACCCTAAAAGACACTCCCAATGCCTGCAATTCTATCACTACAACAGTGGGGGGGTTGATGACCAGCTGAACATCTGGGTTCGTGAATACACTGCTGAAAAACCCACTGGAGCCCTGAGACTCATTCAGAAGATCAGTGGTGGACTTCAAGGCTCCTGGGAACTATACCATGTTACGCTAAATGTCTCTCATAAATTCAGAGTAGTGTTTGAAGGAGTTAAAGGAAGAAAACTATCAAAGGGTGGTCTGTCTCTGGACGACATCAACCTCTCAGAGACCAAGTGTCCTCAACACACTTGGCGCATTCGTGATTTTAACAGGCTTCTCGCTACGACCCCTGCTGGTTTCATAAAATACAGCCCCCGCTTCCTTTCCCCAGATGGTTACTCGTTTCAGATTGGTTTGCAAATTAATGGCttgaagcataaaaaaaaattggcaatcAACTTCCACTTGACCTCTGGACCCAAAGACAAAAATCTTAAATGGCCGTGTCCGTGGCGTCAGGCATCCATGGAGCTGATGGACcagaatccagacatccaacaTCGCATGAACAACATTAAGATGATCACTACAGATCCAACCAAGACTACCACTAACTCCATGGGTAGAGTTTATTTATGGGACAATCCACAAAAAGTAGGCAGTCTAGTCACTGACGCAAATGGCAGTAAATACTATCGGGGGCCAGGTTACAACACCACTGAATACATCACGCAGGATCGCCTGAAGAGTCGAAGCTTTATTAAAGGAAATGATgtcatcttcctcctctcccTTGAAGATGTGACTGGACTGAAGACCAAGAGACCAAACTTCAGAGAGCTGGGGTTAGAGATTGATGACTATGATGCAGAGGAGACAGATGGCTAACGccagttttccttttaaaaggaGCATGGACTAAAAGACTGAGAGACACATCATGAAGCCCCaactgagagagacagaaaaaagaaatcttgCCAGATTGTGTCTGAatcatgaataaaaagtattctttaGGGACATTGCCTCCTTAAGATGAATTTCATCTTGTATTCCTCATTTgcaagttgctttggataaaaccatctgctaaatgaataaatgtaaatgcaaaataaaaagcaaataaataaataacaatgaaagCA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016020 membrane cellular_component
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202745 lncRNA downstream 29691 9459505 ~ 9536077 (-) False G137267
TU202742 lncRNA downstream 37232 9459505 ~ 9528536 (-) False G137267
TU202743 lncRNA downstream 84214 9459505 ~ 9481554 (-) True G137267
TU202738 lncRNA downstream 117857 9440237 ~ 9447911 (-) True G137264
TU202821 lncRNA upstream 120609 9696283 ~ 9697334 (-) False si:ch73-74h11.1
TU202777 lncRNA upstream 121988 9697662 ~ 9751337 (-) False si:dkey-5n18.1
TU202778 lncRNA upstream 174003 9749677 ~ 9751337 (-) True si:dkey-5n18.1
TU202858 lncRNA upstream 632400 10208074 ~ 10208585 (-) True G137346
TU202860 lncRNA upstream 656350 10232024 ~ 10235306 (-) True G137348
XM_043220106.1 mRNA downstream 5453 9555458 ~ 9560315 (-) False mep1ba
XM_043220124.1 mRNA downstream 15566 9545841 ~ 9550202 (-) True si:ch211-191a24.4
XM_043220089.1 mRNA downstream 20729 9509666 ~ 9545039 (-) False si:ch211-191a24.3
XM_043220123.1 mRNA upstream 4233 9579907 ~ 9583650 (-) True LOC122325177
XM_043220112.1 mRNA upstream 79997 9655671 ~ 9658693 (-) False LOC122325171
XM_043220115.1 mRNA upstream 79997 9655671 ~ 9658693 (-) False LOC122325171
XM_043220114.1 mRNA upstream 79997 9655671 ~ 9658693 (-) False LOC122325171
XM_043220111.1 mRNA upstream 79997 9655671 ~ 9658693 (-) False LOC122325171
XR_006247224.1 other downstream 230707 9330137 ~ 9335061 (-) False pcsk9
XR_006247226.1 other downstream 286803 9255548 ~ 9278965 (-) False bloc1s2
XR_006247225.1 other downstream 286803 9265372 ~ 9278965 (-) False bloc1s2
XR_006247227.1 other downstream 286803 9265372 ~ 9278965 (-) True bloc1s2
TU202481 other downstream 744049 8821154 ~ 8821719 (-) True G137056
TU202840 other upstream 362291 9937965 ~ 9938877 (-) True G137330
TU203003 other upstream 991623 10567297 ~ 10570737 (-) True G137451
TU203048 other upstream 1146247 10721921 ~ 10724069 (-) True G137469
unassigned_transcript_2506 other upstream 1356888 10932562 ~ 10932644 (-) True trnal-cag_34
TU203246 other upstream 1556952 11132626 ~ 11136588 (-) False LOC122324412

Expression Profile