RNA id: XM_043220113.1


Basic Information

Item Value
RNA id XM_043220113.1
length 1850
RNA type mRNA
GC content 0.40
exon number 6
gene id LOC122325171
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 9655671 ~ 9658693 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTATGCTGTTGTTTGAGTCTCTCACAGTAAAATGGCAGAAGGCAGTATTTTGGTGGAACAGGACCAGTTCTCCTGTCCAGTGTGTCTGGATCTACTGAAGAATCCAGTGACCATTCCCTGTGGACACAGTTTCTGTATGAGCTGTATTACACACTGCTGGAATCAGGAGGATCAGAAGGGAGTTTACAGCTGCCCTCAATGCAGACAGACCTTCGTTCCAAGGCCTGTTTTAGGCAAAAACACCATCTTGACTGAAATGGTGGAGAAACTGAAGAAGACTAAACTACAAGCTCCTGTTCCCGCTCGTGCTGGAGATGTGGAGTGTGACATCTGCactgaaacaaaacacataGCCGTCAAGTCCTGTCTGGTGTGTCTGGAGTCTTACTGTCAGACTCATTTTGACCGTCATGAAGAATTTCGTTCAGGTAAACCACACAAAGTGATCGATGCCACCGGACGACTGCAGCAGATGATCTGCCCTCAACATCATAAACAACTGGAAATCTACTGCCAGACTGACAAGAGCTGTATTTGTTACTTGTGTACAATGGATGAACATAAAAACCATGACACTATAACAGCTCTAGCAGAAAGGACGAGGAGACAGAAAAACCTGGAGCAAAtacaaaacatcttaaagcAGAAAATCCCGAAGATCGAGGCAGATCTTCAGGAGCTGAGAGAGGATGTGAAGACTTATAAGTGCTCTGCACAGAAAGCAGTGGAGGAGAGTGAGAGGAACTTCAATGAACTGATCATCTTCATTGAGAGAAGCCGCTCTGAGGTCACACAGATCATCAGAGATCGGGAAAAAGCTGCAGTGAGTCGAGCTGAAGAACGCATGAAGAAACTGGAGCAGGAGATTGGTGATCTGAAGAGTAGAAACACTGAACTGGAGAAGCTTTTACAAACAGATGATCACATCCATTTCCTACAGAGTTTCCATAAAGAGCTTGTCATGCCATATTTAAAATGGCCTAAGGTCAGAGACACATCTATCCTCTATTTTGAAGATGTAGGGAAATCAATTtctttgttaaaagaaaaaatccaGCATTTCTGCAAAGAGGAGATAGAAAAGATATCTCGTACAgTGTACAGTTGCAGCTTCAGGATTAAAAACCACTGGAATAGAAAGCACAATATCGGATGCACACTGGTCGCGTCACAGTATAATACTTTTAAACTCCGAAAGTTTAAAATCCCTCCACCTGTACTTTGCCCTGAGCGGGATTCAGATCACAGTGTACGGCGTGGGAAGTTTCCCCTCCAAGGATCCAACAATCACTAGAGGTTTACATGCACAGCTCTTGCTGGCCTGCGATAAGGCCAGATTTATAGATTTATCTTAGACCCTACACAGTTCCAGCATTATgacaaaatacagtattttataaaGTGTACCTTGGTGGAGTCACAAAATAAGTTCCAATGAGATATCAGAGCATTTCTTGATACAGTTTTGTCCCCACCTACTTTATATCAAGGGCAAAAAGCCAGATGAAAgacatattaatatacattaagaAATTACAATATTTAGTAATGAAAAAGTTGTAATTTGACATTTGGCAACTTTTAGGAAATAAGCTCTTCtatgctcatttattttatcctGCATACTTTCTATCTTTTGtggaatatataatattttttaagtcttgtgttgttgtttttttatccaTACAATGAATGTTAATTGGCCATTTAATTATTCACAGGTTGTCTGCTTTTTgtaatacataatgtaaatgATTAGTGTAATAAATTGtcagaataaatttaattttgttaacaTTGTGTATCcttctgtaatattttaataaatcaccaCAAAGCTAACCCA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202745 lncRNA downstream 119594 9459505 ~ 9536077 (-) False G137267
TU202742 lncRNA downstream 127135 9459505 ~ 9528536 (-) False G137267
TU202743 lncRNA downstream 174117 9459505 ~ 9481554 (-) True G137267
TU202738 lncRNA downstream 207760 9440237 ~ 9447911 (-) True G137264
TU202821 lncRNA upstream 37590 9696283 ~ 9697334 (-) False si:ch73-74h11.1
TU202777 lncRNA upstream 38969 9697662 ~ 9751337 (-) False si:dkey-5n18.1
TU202778 lncRNA upstream 90984 9749677 ~ 9751337 (-) True si:dkey-5n18.1
TU202858 lncRNA upstream 549381 10208074 ~ 10208585 (-) True G137346
TU202860 lncRNA upstream 573331 10232024 ~ 10235306 (-) True G137348
XM_043220123.1 mRNA downstream 72021 9579907 ~ 9583650 (-) True LOC122325177
XM_043220104.1 mRNA downstream 79997 9565768 ~ 9575674 (-) False mep1ba
XM_043220105.1 mRNA downstream 79997 9565768 ~ 9575674 (-) False mep1ba
XM_043220103.1 mRNA downstream 79997 9565768 ~ 9575674 (-) False mep1ba
XM_043220106.1 mRNA downstream 95356 9555458 ~ 9560315 (-) False mep1ba
XM_043220118.1 mRNA upstream 447 9659140 ~ 9665799 (-) False LOC122325172
XM_043220116.1 mRNA upstream 447 9659140 ~ 9663134 (-) True LOC122325172
XM_043220117.1 mRNA upstream 447 9659140 ~ 9663124 (-) False LOC122325172
XM_043220129.1 mRNA upstream 22153 9680846 ~ 9683912 (-) True ttr
XM_043220518.1 mRNA upstream 32431 9691124 ~ 9700538 (-) True si:ch73-74h11.1
XR_006247224.1 other downstream 320610 9330137 ~ 9335061 (-) False pcsk9
XR_006247226.1 other downstream 376706 9255548 ~ 9278965 (-) False bloc1s2
XR_006247225.1 other downstream 376706 9265372 ~ 9278965 (-) False bloc1s2
XR_006247227.1 other downstream 376706 9265372 ~ 9278965 (-) True bloc1s2
TU202481 other downstream 833952 8821154 ~ 8821719 (-) True G137056
TU202840 other upstream 279272 9937965 ~ 9938877 (-) True G137330
TU203003 other upstream 908604 10567297 ~ 10570737 (-) True G137451
TU203048 other upstream 1063228 10721921 ~ 10724069 (-) True G137469
unassigned_transcript_2506 other upstream 1273869 10932562 ~ 10932644 (-) True trnal-cag_34
TU203246 other upstream 1473933 11132626 ~ 11136588 (-) False LOC122324412

Expression Profile