RNA id: XM_043220116.1


Basic Information

Item Value
RNA id XM_043220116.1
length 2970
RNA type mRNA
GC content 0.39
exon number 6
gene id LOC122325172
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 9659140 ~ 9665799 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAAGTTCAGCTGGAAACTGAACACTGTAATGGCAATTTCTTACCTTTAGATGGAGACAATGCACACTAATGCTAGATAACCCTCAAAGAGGTCAGATTTTGCTGCATTTACTTCAACTTCAATCAAACCAATCAATGCCGTCATTTCCTTTATAAATCTGACAGGAAAAGGCAAGTCACCATACtgataaatatatgcatttaactaGGAAAATCTCTAAAGGGGTAATTCAGTAGTGATATATGCAAACAATACGGTTTAGTAGCTAATATAAATCTTTCAATAAGGTTCCTGAAGGACCTGCTTTCCcaaagcttttaaatatgaaaagacaGTGGTCTaactttcataaaataaaatgagtctTTTTGCCCGCAGCCTGATCTGAATTCCAAACAACTTCATATTATAGGCTGCATCACATGATAAGGTCGTTAGTCTAATAACTCTTCAATAACTGATTCCGCAGGTGCATAATTAAATTCACACTCTGAAAGATGAGCTCCGAAAATAAGCAGCAATCAACGTGATGTATAATAATAAGCTACGTATTCAAGTGTCACTCGCGGGTTTGCCACCAAAGATCATTTATTAGGCTCTCTAATTAACCATTGTCACttatttcacattatatttCATTCCTACACTTTACTTTTTGTTCTTCCTTTGCTTTTTTGCGCCCAGATTCTTTGTAATAAATTGGAAGGGACGATTACAAGAAACGCAGCCGTATGCAAGTAATGGGAAAGTATGTCAACTAGTTTACCGAATTAAATTGTCTTCTTAATCATCCAGGAAGGATTTGCTCATTAAAAGAAGTGAATCACGGTTCTGACTGTGATCAGAATAGAACAGGCACACATTTGATCAAATTGTTAGGgaaatcaatcattttcagCCTAggatttttctgtaaaattagtTTTACGTAGCTGGGGCTAGATAAACCAGCTAGATAACTTTCTCCAACTATCCGACCCTACCTTGACCCCGAAAGTCTGAAATAACCTAGATAGTTTTATTAATAGGCTACTGGCTATAAAAACTGCATCTGCAAAATATCTTGTATATATAATTCTCACAAGAGCATGATTAGCTCAAATCAAATTCACTGGGCaaattttttcagtttcacttgtaataaaaaaaacgaaacattcAAATTCCCTAAAACCACGCAGCGCCCTTTTAAAccagtttttatttacttccTGAACGCGTCTGCAGTAAACAGTATACAGAATGAGGAAACTGTTTCAACTATTCAGCTGAAAGAACCAGCAGCGTTAGTTATTGTTGAGCTGTTGTTTGTGTGGTTTGGTCTGTAATCTTAAAATGGCAGAAGGCAGTATTTCGGTGGAACAGGACCAGTTCTCCTGTCCAGTGTGTCTGGATCTACTGAAGAATCCAGTGACCATCCCCTGTGGACACAGTTTCTGTATGAGCTGTATTACACACTGCTGGAATCAGGAGGACTGGAAGGGATTGTACACATGTCCTCAGTGCAGACGGACCTTCGCTCCGAGACCTGCCCTGTGTAAGAATGTGATGTTCGCCAAAATGGTGGAGAAACTAAACATGACTAAACTGCAAGCTGCCGTTCCTGCTGGTCATTTTGACCGCCGTGAAGAATTTCGTTCGGGTAAACCACACAAAGTGACCGGACGACTGCAGCAGACGCTCTGTCCTCAACATCATAAACAACTGGAAATGTACTGCCGGACTGACCAGAAGTATATCTGTTACTTGTGTGCAGTGGATGAACACAAACACCACACGACTGTCGCAGCGTTAGATGAGAGGACGGAGAAACAGAAACATCTGGAACAAACACAAAGAGACTTCCAGCAGAGAATCcagctgagagagaaagacctTCAGGAGCTGAGAGAGGTTGTGAAGACTCATCAGTGCTCTGCACAGAAAGCAGTGGAGGAGAGTGAGAGGAACTTCAATGAACTGATCATCTTCATTGAGAGAAGCCGCTCTGAGGTCACACAGATCATCAGAGATCGGGAAAAAGCTGCAGTGAGTCGAGCTGAAGAACGCATGAAGAAACTGGAGCAGGAGATTGGTGATCTGAAGAGTAGAAACACTGAACTGGAGAAGCTTTTACAAACAGATGATCACATCCATTTCCTACAGAGTGTCGAGTCTTGCTCTGTTCCTCCACAAACTACAGATGTGTCCAGAATCACAGCCAGTTCTCACCTTTTGTACAATGATGTGGTAAAATCTGTCCTTCTGCTAAAGAAGAATCTTGAGCATTTCTGCAAAGAAGTGATAGACAAGATATCTTGTACAGGTAAAGTCACTGAAGAATCATCACATGCAACATACATGCAAGACATTCAGATCATTTCCACTTCTGAGGAGAGAATACAGTCACCACAGCAACGGTCCCGGGCCCCGATGTCAGGGTCTCCAACTGGTCGTCCCCAAAATGTATGGTCACAAAGCAGATCCTTATCAGATTCAAAGTACTGGCATTTCATGGAATAAAAGTCTCGACCCAGAGCCTCCACTTTACCAGGATCGTGTGTCAGACCCTCCAGAGGTCACGCTGCTCAACTGCTGTGTTAATGGAAGTTCATAGCTGAAGCACatgcatatttgtttaaaattaatatttagtttaaaagcacaagaatatttttttagaaatgtacttACTGGTAATGTATTACTGGTATATTCCTATTTTAATGTTGGAAAtctacatatatttattcattgtatTATCATCTTTGTATAACTTCATAAATGTTGCAGGAAATATATTTACCATATCTTTAGGCATTTATGTATCTATGTATGCAATTATCTATCTAGAGAACTGGTAGAAATTTAGTCATCTGTTTTGGTCTTGTAATCTTTTGCCAATGCCGTCGTTTTTCTATTTAGATGAATTATTTGTAAGTGCAGGTGAAGCTGGTTGATGTGGTTATTAAAGATTTCTTATTCGTTTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202745 lncRNA downstream 123063 9459505 ~ 9536077 (-) False G137267
TU202742 lncRNA downstream 130604 9459505 ~ 9528536 (-) False G137267
TU202743 lncRNA downstream 177586 9459505 ~ 9481554 (-) True G137267
TU202738 lncRNA downstream 211229 9440237 ~ 9447911 (-) True G137264
TU202821 lncRNA upstream 33149 9696283 ~ 9697334 (-) False si:ch73-74h11.1
TU202777 lncRNA upstream 34528 9697662 ~ 9751337 (-) False si:dkey-5n18.1
TU202778 lncRNA upstream 86543 9749677 ~ 9751337 (-) True si:dkey-5n18.1
TU202858 lncRNA upstream 544940 10208074 ~ 10208585 (-) True G137346
TU202860 lncRNA upstream 568890 10232024 ~ 10235306 (-) True G137348
XM_043220112.1 mRNA downstream 447 9655671 ~ 9658693 (-) False LOC122325171
XM_043220129.1 mRNA upstream 17712 9680846 ~ 9683912 (-) True ttr
XM_043220518.1 mRNA upstream 27990 9691124 ~ 9700538 (-) True si:ch73-74h11.1
XM_043220090.1 mRNA upstream 38765 9701899 ~ 9711474 (-) True zmp:0000001074
XM_043220063.1 mRNA upstream 50133 9713267 ~ 9725416 (-) True dsg2.1
XM_043218587.1 mRNA upstream 86682 9749816 ~ 9751383 (-) False si:dkey-5n18.1
XR_006247224.1 other downstream 324079 9330137 ~ 9335061 (-) False pcsk9
XR_006247226.1 other downstream 380175 9255548 ~ 9278965 (-) False bloc1s2
XR_006247225.1 other downstream 380175 9265372 ~ 9278965 (-) False bloc1s2
XR_006247227.1 other downstream 380175 9265372 ~ 9278965 (-) True bloc1s2
TU202481 other downstream 837421 8821154 ~ 8821719 (-) True G137056
TU202840 other upstream 274831 9937965 ~ 9938877 (-) True G137330
TU203003 other upstream 904163 10567297 ~ 10570737 (-) True G137451
TU203048 other upstream 1058787 10721921 ~ 10724069 (-) True G137469
unassigned_transcript_2506 other upstream 1269428 10932562 ~ 10932644 (-) True trnal-cag_34
TU203246 other upstream 1469492 11132626 ~ 11136588 (-) False LOC122324412

Expression Profile